Wall clock time and date at job start Tue Mar 31 2020 11:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48496 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46521 * 299.99510 * 3 2 1 6 6 H 1.48496 * 109.47167 * 59.99049 * 3 2 1 7 7 C 1.38811 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00278 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00083 * 359.73444 * 7 2 1 10 10 C 1.46499 * 119.99973 * 180.27006 * 9 7 2 11 11 H 1.08997 * 110.88904 * 34.30291 * 10 9 7 12 12 C 1.55159 * 111.00618 * 270.41620 * 10 9 7 13 13 C 1.54371 * 102.92195 * 206.45777 * 12 10 9 14 14 N 1.47020 * 107.28944 * 22.13765 * 13 12 10 15 15 C 1.34774 * 125.64944 * 181.05971 * 14 13 12 16 16 O 1.21282 * 120.00237 * 174.94651 * 15 14 13 17 17 C 1.50700 * 119.99825 * 354.95102 * 15 14 13 18 18 H 1.09001 * 109.63581 * 335.15824 * 17 15 14 19 19 C 1.53308 * 109.63491 * 214.75683 * 17 15 14 20 20 C 1.52802 * 108.53012 * 170.52575 * 19 17 15 21 21 C 1.50447 * 110.45799 * 50.99372 * 20 19 17 22 22 N 1.32892 * 118.53635 * 162.36384 * 21 20 19 23 23 C 1.31601 * 121.06395 * 179.74684 * 22 21 20 24 24 N 1.31822 * 121.67362 * 359.96802 * 23 22 21 25 25 C 1.32189 * 120.63509 * 0.13607 * 24 23 22 26 26 C 1.37769 * 122.58272 * 342.30129 * 21 20 19 27 27 C 1.50343 * 122.79843 * 0.68083 * 26 21 20 28 28 C 1.47427 * 108.70519 * 1.09368 * 14 13 12 29 29 H 0.97003 * 119.99989 * 0.02562 * 1 2 3 30 30 H 0.97006 * 119.99766 * 0.26898 * 9 7 2 31 31 H 1.09005 * 110.71582 * 324.78860 * 12 10 9 32 32 H 1.08995 * 110.71720 * 88.05674 * 12 10 9 33 33 H 1.09001 * 109.84158 * 262.73293 * 13 12 10 34 34 H 1.08995 * 110.02781 * 141.65355 * 13 12 10 35 35 H 1.09005 * 109.62605 * 290.23422 * 19 17 15 36 36 H 1.08994 * 109.63361 * 50.61326 * 19 17 15 37 37 H 1.09002 * 109.31179 * 171.29461 * 20 19 17 38 38 H 1.09008 * 109.30397 * 290.69482 * 20 19 17 39 39 H 1.08004 * 119.16733 * 179.97438 * 23 22 21 40 40 H 1.08007 * 120.36121 * 179.97438 * 25 24 23 41 41 H 1.08997 * 109.30992 * 222.06695 * 27 26 21 42 42 H 1.09000 * 109.31481 * 102.65560 * 27 26 21 43 43 H 1.08993 * 110.36803 * 217.03768 * 28 14 13 44 44 H 1.09001 * 110.36846 * 94.70643 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2123 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0066 10 6 2.0581 -3.6568 0.0131 11 1 2.9809 -3.5698 0.5866 12 6 2.3454 -4.1406 -1.4328 13 6 2.4545 -5.6717 -1.2693 14 7 1.7398 -6.0314 -0.0358 15 6 1.6218 -7.2753 0.4693 16 8 1.0862 -7.4451 1.5442 17 6 2.1554 -8.4553 -0.3014 18 1 2.1885 -8.2142 -1.3638 19 6 1.2477 -9.6702 -0.0769 20 6 1.6677 -10.7755 -1.0448 21 6 3.1502 -11.0162 -0.9569 22 7 3.6389 -12.1521 -1.4438 23 6 4.9282 -12.4116 -1.3975 24 7 5.7868 -11.5618 -0.8701 25 6 5.3730 -10.4127 -0.3644 26 6 4.0175 -10.1059 -0.3937 27 6 3.5589 -8.8008 0.1952 28 6 1.1729 -4.8062 0.5565 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0065 31 1 1.5208 -3.8818 -2.0971 32 1 3.2831 -3.7234 -1.7999 33 1 3.5022 -5.9615 -1.1886 34 1 1.9964 -6.1719 -2.1225 35 1 1.3543 -10.0223 0.9492 36 1 0.2104 -9.3917 -0.2625 37 1 1.1380 -11.6946 -0.7942 38 1 1.4102 -10.4806 -2.0622 39 1 5.2921 -13.3446 -1.8020 40 1 6.0804 -9.7198 0.0670 41 1 4.2498 -8.0105 -0.0983 42 1 3.5473 -8.8801 1.2822 43 1 1.2315 -4.8484 1.6441 44 1 0.1395 -4.6730 0.2363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968893671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:16 Heat of formation + Delta-G solvation = -2.420547 kcal Electronic energy + Delta-G solvation = -25891.023400 eV Core-core repulsion = 22228.177036 eV Total energy + Delta-G solvation = -3662.846364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39673 -41.17082 -38.97099 -37.55085 -35.92984 -35.05588 -33.36070 -32.47846 -31.50788 -30.89058 -29.29032 -26.52319 -25.74119 -25.05295 -24.09950 -23.88236 -21.80465 -21.48470 -19.97284 -19.29731 -18.71603 -18.29115 -17.77157 -17.29847 -16.78494 -16.38205 -16.02254 -15.56784 -15.51979 -15.16508 -14.92729 -14.88850 -14.65101 -14.59273 -14.32174 -14.05993 -13.66117 -13.41340 -13.22472 -13.15569 -13.02016 -12.90402 -12.68560 -12.32050 -12.17503 -12.07594 -11.95887 -11.87155 -11.73967 -11.58847 -11.37197 -10.95136 -10.80030 -10.20783 -10.17621 -9.66097 -9.04236 -7.95132 -5.24985 -0.08497 0.05350 1.49526 1.50411 1.53781 1.59965 1.90350 2.57268 2.75081 3.02570 3.24253 3.33682 3.39831 3.48793 3.60861 3.65627 3.73675 3.85442 3.98454 4.07470 4.20819 4.27836 4.28859 4.31535 4.36607 4.45110 4.52836 4.56197 4.63673 4.73437 4.78838 4.86328 4.88841 5.00857 5.03531 5.07186 5.16478 5.26336 5.28888 5.44235 5.47051 5.55177 5.99834 6.26027 6.54452 7.10078 7.10603 7.32777 8.04792 8.28011 9.28383 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028242 B = 0.002459 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.190757 B =11382.902716 C =11921.673521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.298 1.298 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.730 5.730 10 C 0.165 3.835 11 H 0.063 0.937 12 C -0.146 4.146 13 C 0.106 3.894 14 N -0.611 5.611 15 C 0.532 3.468 16 O -0.584 6.584 17 C -0.093 4.093 18 H 0.118 0.882 19 C -0.097 4.097 20 C -0.065 4.065 21 C 0.170 3.830 22 N -0.539 5.539 23 C 0.281 3.719 24 N -0.540 5.540 25 C 0.150 3.850 26 C -0.177 4.177 27 C -0.054 4.054 28 C 0.106 3.894 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.218 0.782 40 H 0.193 0.807 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.495 -24.096 -5.420 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.225 1.225 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.369 5.369 10 C 0.055 3.945 11 H 0.081 0.919 12 C -0.186 4.186 13 C -0.016 4.016 14 N -0.344 5.344 15 C 0.322 3.678 16 O -0.464 6.464 17 C -0.115 4.115 18 H 0.136 0.864 19 C -0.136 4.136 20 C -0.102 4.102 21 C 0.026 3.974 22 N -0.253 5.253 23 C -0.006 4.006 24 N -0.254 5.254 25 C -0.017 4.017 26 C -0.181 4.181 27 C -0.093 4.093 28 C -0.018 4.018 29 H 0.059 0.941 30 H 0.206 0.794 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.234 0.766 40 H 0.210 0.790 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.705 -25.015 -5.208 27.332 hybrid contribution -0.643 2.001 0.563 2.176 sum 9.062 -23.014 -4.646 25.166 Atomic orbital electron populations 1.69825 1.06685 1.26019 1.59481 1.25569 0.96327 1.01147 1.03727 0.85089 0.78427 0.79885 0.76443 1.18693 1.22160 1.22514 1.19637 0.91571 0.84714 1.40907 0.90050 1.42437 1.05466 1.00650 1.88376 1.21465 0.93999 0.84141 0.94917 0.91919 1.23224 1.02802 0.93796 0.98798 1.22255 0.97896 0.95440 0.86021 1.48562 1.53483 1.05879 1.26436 1.20760 0.78600 0.83147 0.85304 1.90695 1.46662 1.85387 1.23674 1.21318 0.96546 0.92112 1.01485 0.86409 1.21401 0.99404 0.92742 1.00018 1.20423 0.87880 1.00156 1.01757 1.21651 0.97805 0.88239 0.89707 1.68440 1.17326 1.20476 1.19089 1.25422 0.84577 0.98916 0.91707 1.68499 1.40547 1.04528 1.11847 1.23736 0.93893 0.93064 0.91029 1.21092 0.95701 0.98847 1.02434 1.20176 0.94664 0.93625 1.00827 1.22238 0.97272 0.84315 0.98019 0.94057 0.79411 0.91954 0.89670 0.88644 0.89138 0.91506 0.89994 0.88137 0.87395 0.76556 0.79021 0.87495 0.89854 0.92243 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.91 13.06 21.65 0.28 -57.63 16 2 C -0.08 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.97 44.58 29.55 68.60 2.03 46.60 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 7 C -0.24 -12.40 9.97 84.03 0.84 -11.57 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.73 -34.70 5.26 -316.36 -1.66 -36.36 16 10 C 0.16 5.91 3.70 46.39 0.17 6.08 16 11 H 0.06 2.27 8.11 -2.39 -0.02 2.26 16 12 C -0.15 -4.05 6.65 31.80 0.21 -3.84 16 13 C 0.11 2.08 6.16 86.75 0.53 2.61 16 14 N -0.61 -15.77 3.33 -811.69 -2.70 -18.47 16 15 C 0.53 13.51 6.82 87.66 0.60 14.11 16 16 O -0.58 -20.01 16.69 -3.04 -0.05 -20.06 16 17 C -0.09 -1.51 2.18 -11.49 -0.03 -1.53 16 18 H 0.12 1.41 6.93 -2.39 -0.02 1.40 16 19 C -0.10 -1.53 4.80 30.63 0.15 -1.39 16 20 C -0.06 -0.84 5.96 29.70 0.18 -0.66 16 21 C 0.17 2.77 6.62 42.21 0.28 3.05 16 22 N -0.54 -9.70 10.32 -188.71 -1.95 -11.65 16 23 C 0.28 4.51 12.29 180.93 2.22 6.73 16 24 N -0.54 -9.33 10.44 -199.92 -2.09 -11.42 16 25 C 0.15 2.15 10.94 84.83 0.93 3.07 16 26 C -0.18 -2.60 5.73 -19.90 -0.11 -2.71 16 27 C -0.05 -0.75 5.02 29.68 0.15 -0.60 16 28 C 0.11 3.54 6.57 86.86 0.57 4.11 16 29 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 30 H 0.37 19.43 7.73 -92.70 -0.72 18.71 16 31 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.36 7.72 -2.39 -0.02 1.34 16 35 H 0.07 1.25 8.09 -2.38 -0.02 1.23 16 36 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.22 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 42 H 0.08 1.34 8.11 -2.39 -0.02 1.32 16 43 H 0.06 2.17 7.99 -2.39 -0.02 2.16 16 44 H 0.06 2.03 8.00 -2.39 -0.02 2.01 16 Total: -1.00 -70.96 360.78 1.31 -69.65 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.30 Total: 25.58 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 7.15 Total: 13.76 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -8.12 Total: -135.53 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.05 Total: -20.06 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.96 1.31 -69.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968893671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.228 kcal (2) G-P(sol) polarization free energy of solvation -70.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds