Wall clock time and date at job start Tue Mar 31 2020 11:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00422 * 2 1 4 4 H 1.48494 * 109.47312 * 270.00246 * 3 2 1 5 5 H 1.48506 * 109.46899 * 30.00267 * 3 2 1 6 6 H 1.48498 * 109.47465 * 149.99717 * 3 2 1 7 7 C 1.38813 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99861 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00137 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99694 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.88293 * 37.43287 * 10 9 7 12 12 C 1.55154 * 111.00431 * 273.54639 * 10 9 7 13 13 C 1.54326 * 102.93895 * 206.39176 * 12 10 9 14 14 N 1.47016 * 107.27552 * 22.19095 * 13 12 10 15 15 C 1.34778 * 125.65173 * 181.02344 * 14 13 12 16 16 O 1.21280 * 120.00267 * 174.98638 * 15 14 13 17 17 C 1.50702 * 119.99789 * 355.25873 * 15 14 13 18 18 H 1.09000 * 109.63289 * 25.96194 * 17 15 14 19 19 C 1.53311 * 109.63599 * 146.36985 * 17 15 14 20 20 C 1.52805 * 108.51741 * 189.51491 * 19 17 15 21 21 C 1.50439 * 110.45505 * 309.02044 * 20 19 17 22 22 N 1.32893 * 118.53443 * 197.48655 * 21 20 19 23 23 C 1.31597 * 121.06483 * 180.21648 * 22 21 20 24 24 N 1.31822 * 121.67409 * 0.02562 * 23 22 21 25 25 C 1.32188 * 120.63786 * 359.88986 * 24 23 22 26 26 C 1.37774 * 122.58362 * 17.53649 * 21 20 19 27 27 C 1.50339 * 122.80440 * 359.58616 * 26 21 20 28 28 C 1.47434 * 108.70206 * 1.29021 * 14 13 12 29 29 H 0.97002 * 119.99949 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99817 * 0.02562 * 9 7 2 31 31 H 1.08998 * 110.71968 * 88.02974 * 12 10 9 32 32 H 1.08999 * 110.72141 * 324.74872 * 12 10 9 33 33 H 1.09002 * 109.87933 * 262.77599 * 13 12 10 34 34 H 1.08996 * 109.88141 * 141.61486 * 13 12 10 35 35 H 1.09005 * 109.62735 * 309.22527 * 19 17 15 36 36 H 1.08999 * 109.62892 * 69.80129 * 19 17 15 37 37 H 1.08998 * 109.30871 * 69.32878 * 20 19 17 38 38 H 1.09008 * 109.30699 * 188.92156 * 20 19 17 39 39 H 1.08004 * 119.16499 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.36245 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.30789 * 257.15112 * 27 26 21 42 42 H 1.08998 * 109.30990 * 137.74780 * 27 26 21 43 43 H 1.09000 * 110.36599 * 94.47900 * 28 14 13 44 44 H 1.08997 * 110.36738 * 216.80533 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.6057 -3.2119 -0.6197 12 6 4.3130 -2.9972 1.4446 13 6 5.5902 -3.8552 1.3257 14 7 6.3220 -3.3868 0.1397 15 6 7.4828 -3.8955 -0.3187 16 8 7.9530 -3.4903 -1.3606 17 6 8.1934 -4.9723 0.4602 18 1 7.4720 -5.5267 1.0605 19 6 8.9002 -5.9276 -0.5084 20 6 9.4076 -7.1327 0.2823 21 6 10.1972 -6.6808 1.4804 22 7 11.0004 -7.5549 2.0778 23 6 11.7107 -7.2141 3.1319 24 7 11.6571 -5.9986 3.6392 25 6 10.8815 -5.0758 3.0968 26 6 10.1186 -5.3995 1.9805 27 6 9.2457 -4.3388 1.3696 28 6 5.5790 -2.2642 -0.4614 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3622 -0.0007 31 1 3.4652 -3.6084 1.7539 32 1 4.4672 -2.1704 2.1380 33 1 5.3217 -4.9047 1.2050 34 1 6.2064 -3.7281 2.2157 35 1 8.1975 -6.2604 -1.2724 36 1 9.7411 -5.4172 -0.9778 37 1 8.5580 -7.7293 0.6147 38 1 10.0464 -7.7410 -0.3582 39 1 12.3539 -7.9490 3.5932 40 1 10.8407 -4.0815 3.5163 41 1 9.8631 -3.6563 0.7856 42 1 8.7479 -3.7808 2.1626 43 1 5.9643 -1.3136 -0.0926 44 1 5.6443 -2.3049 -1.5486 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968893672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:21 Heat of formation + Delta-G solvation = 22.110739 kcal Electronic energy + Delta-G solvation = -25946.104370 eV Core-core repulsion = 22284.321762 eV Total energy + Delta-G solvation = -3661.782608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76464 -40.18842 -37.92714 -36.70808 -34.48003 -34.30885 -31.95173 -31.68710 -30.73823 -29.85981 -28.20677 -25.72877 -24.75363 -23.52169 -23.34318 -22.75016 -20.93112 -20.27710 -19.06741 -17.98882 -17.77743 -17.46808 -17.12935 -16.29989 -15.66904 -15.18596 -15.16526 -14.52519 -14.38146 -14.29253 -14.09916 -13.93686 -13.74592 -13.41110 -13.35490 -12.83644 -12.69548 -12.55794 -12.25246 -12.10942 -11.95798 -11.55191 -11.46580 -11.30418 -11.20524 -10.95899 -10.79358 -10.73082 -10.54645 -10.14981 -9.79698 -9.69181 -9.60230 -9.55216 -9.04486 -8.60290 -7.41850 -5.87396 -3.25481 0.51253 0.66063 2.50790 2.90974 3.30794 3.34128 3.35828 3.39884 3.60670 3.82346 4.00000 4.16757 4.21927 4.33554 4.49788 4.53589 4.80828 4.83703 4.87182 4.92238 5.01218 5.11227 5.12759 5.14582 5.21663 5.32345 5.37726 5.45441 5.46029 5.56098 5.63100 5.67323 5.78149 5.80447 5.85473 6.03061 6.04402 6.18095 6.35269 6.45460 6.59915 6.71649 7.52804 7.70654 7.86024 8.10711 8.30810 9.07294 9.79606 9.97394 11.30229 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.027691 B = 0.002547 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.906927 B =10991.028507 C =11212.286306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.739 5.739 10 C 0.177 3.823 11 H 0.072 0.928 12 C -0.154 4.154 13 C 0.100 3.900 14 N -0.612 5.612 15 C 0.533 3.467 16 O -0.541 6.541 17 C -0.104 4.104 18 H 0.096 0.904 19 C -0.101 4.101 20 C -0.073 4.073 21 C 0.182 3.818 22 N -0.521 5.521 23 C 0.288 3.712 24 N -0.522 5.522 25 C 0.152 3.848 26 C -0.176 4.176 27 C -0.060 4.060 28 C 0.095 3.905 29 H 0.261 0.739 30 H 0.363 0.637 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.196 0.804 40 H 0.169 0.831 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.587 -14.022 5.478 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.381 5.381 10 C 0.066 3.934 11 H 0.090 0.910 12 C -0.195 4.195 13 C -0.024 4.024 14 N -0.345 5.345 15 C 0.321 3.679 16 O -0.418 6.418 17 C -0.125 4.125 18 H 0.114 0.886 19 C -0.139 4.139 20 C -0.111 4.111 21 C 0.038 3.962 22 N -0.235 5.235 23 C 0.000 4.000 24 N -0.236 5.236 25 C -0.015 4.015 26 C -0.180 4.180 27 C -0.099 4.099 28 C -0.028 4.028 29 H 0.071 0.929 30 H 0.197 0.803 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.212 0.788 40 H 0.186 0.814 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.227 -14.577 5.306 27.105 hybrid contribution -0.008 1.836 -0.031 1.836 sum 22.219 -12.741 5.275 26.150 Atomic orbital electron populations 1.69693 1.05128 1.26042 1.56756 1.24679 0.95238 0.97293 1.01551 0.86568 0.79185 0.84904 0.77942 1.20901 1.21627 1.20281 1.19013 0.80128 0.94846 1.43966 0.89011 1.42607 1.04167 1.01474 1.89854 1.21311 0.88961 0.89889 0.93271 0.90963 1.23385 0.95008 0.99530 1.01614 1.22149 0.94083 0.98872 0.87266 1.48485 1.22183 1.34730 1.29130 1.20042 0.79770 0.82708 0.85382 1.90709 1.65887 1.61734 1.23484 1.21310 0.97673 0.95958 0.97603 0.88583 1.21465 1.01195 0.94285 0.96996 1.20477 0.99252 0.98580 0.92748 1.21379 0.91503 0.88850 0.94512 1.68403 1.07596 1.37073 1.10427 1.24914 0.94004 0.92074 0.88964 1.68433 1.20272 1.02904 1.31961 1.23304 0.88802 0.98964 0.90439 1.21094 1.01299 0.96807 0.98782 1.20201 0.95362 0.95560 0.98731 1.22605 0.92399 0.88671 0.99168 0.92879 0.80322 0.90180 0.90578 0.91564 0.91931 0.89782 0.90103 0.88791 0.88570 0.78793 0.81379 0.89004 0.89419 0.91531 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.97 55.49 0.78 -27.41 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 21.23 27.73 -169.99 -4.71 16.52 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 7 C -0.25 -6.64 10.47 -15.06 -0.16 -6.80 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 9 N -0.74 -16.22 5.08 -51.23 -0.26 -16.48 16 10 C 0.18 3.08 3.70 -65.66 -0.24 2.83 16 11 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 12 C -0.15 -2.22 6.64 -24.90 -0.17 -2.38 16 13 C 0.10 1.10 6.01 -3.07 -0.02 1.08 16 14 N -0.61 -7.97 3.32 -170.38 -0.57 -8.54 16 15 C 0.53 6.81 6.84 -10.98 -0.08 6.74 16 16 O -0.54 -8.87 16.66 5.56 0.09 -8.78 16 17 C -0.10 -0.92 2.24 -91.70 -0.21 -1.13 16 18 H 0.10 0.74 6.93 -51.93 -0.36 0.37 16 19 C -0.10 -0.84 4.78 -26.67 -0.13 -0.96 16 20 C -0.07 -0.53 5.96 -28.11 -0.17 -0.70 16 21 C 0.18 1.63 6.62 -82.43 -0.55 1.08 16 22 N -0.52 -5.06 10.32 -11.00 -0.11 -5.17 16 23 C 0.29 2.52 12.29 -92.30 -1.13 1.39 16 24 N -0.52 -4.94 10.44 -14.54 -0.15 -5.10 16 25 C 0.15 1.25 10.94 -17.11 -0.19 1.06 16 26 C -0.18 -1.46 5.73 -104.68 -0.60 -2.06 16 27 C -0.06 -0.47 5.02 -28.15 -0.14 -0.61 16 28 C 0.09 1.46 6.56 -2.40 -0.02 1.45 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.36 7.89 5.58 -40.82 -0.23 7.66 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.63 7.91 -51.93 -0.41 0.22 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.70 8.12 -51.93 -0.42 0.27 16 36 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 39 H 0.20 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.03 8.01 -51.93 -0.42 0.62 16 44 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -33.07 357.76 -9.92 -42.98 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.49 Total: 5.45 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -3.88 Total: 1.13 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.32 Total: -62.69 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.71 Total: 16.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.07 -9.92 -42.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968893672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.093 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds