Wall clock time and date at job start Tue Mar 31 2020 11:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00422 * 2 1 4 4 H 1.48494 * 109.47312 * 270.00246 * 3 2 1 5 5 H 1.48506 * 109.46899 * 30.00267 * 3 2 1 6 6 H 1.48498 * 109.47465 * 149.99717 * 3 2 1 7 7 C 1.38813 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99861 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00137 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99694 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.88293 * 37.43287 * 10 9 7 12 12 C 1.55154 * 111.00431 * 273.54639 * 10 9 7 13 13 C 1.54326 * 102.93895 * 206.39176 * 12 10 9 14 14 N 1.47016 * 107.27552 * 22.19095 * 13 12 10 15 15 C 1.34778 * 125.65173 * 181.02344 * 14 13 12 16 16 O 1.21280 * 120.00267 * 174.98638 * 15 14 13 17 17 C 1.50702 * 119.99789 * 355.25873 * 15 14 13 18 18 H 1.09000 * 109.63289 * 25.96194 * 17 15 14 19 19 C 1.53311 * 109.63599 * 146.36985 * 17 15 14 20 20 C 1.52805 * 108.51741 * 189.51491 * 19 17 15 21 21 C 1.50439 * 110.45505 * 309.02044 * 20 19 17 22 22 N 1.32893 * 118.53443 * 197.48655 * 21 20 19 23 23 C 1.31597 * 121.06483 * 180.21648 * 22 21 20 24 24 N 1.31822 * 121.67409 * 0.02562 * 23 22 21 25 25 C 1.32188 * 120.63786 * 359.88986 * 24 23 22 26 26 C 1.37774 * 122.58362 * 17.53649 * 21 20 19 27 27 C 1.50339 * 122.80440 * 359.58616 * 26 21 20 28 28 C 1.47434 * 108.70206 * 1.29021 * 14 13 12 29 29 H 0.97002 * 119.99949 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99817 * 0.02562 * 9 7 2 31 31 H 1.08998 * 110.71968 * 88.02974 * 12 10 9 32 32 H 1.08999 * 110.72141 * 324.74872 * 12 10 9 33 33 H 1.09002 * 109.87933 * 262.77599 * 13 12 10 34 34 H 1.08996 * 109.88141 * 141.61486 * 13 12 10 35 35 H 1.09005 * 109.62735 * 309.22527 * 19 17 15 36 36 H 1.08999 * 109.62892 * 69.80129 * 19 17 15 37 37 H 1.08998 * 109.30871 * 69.32878 * 20 19 17 38 38 H 1.09008 * 109.30699 * 188.92156 * 20 19 17 39 39 H 1.08004 * 119.16499 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.36245 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.30789 * 257.15112 * 27 26 21 42 42 H 1.08998 * 109.30990 * 137.74780 * 27 26 21 43 43 H 1.09000 * 110.36599 * 94.47900 * 28 14 13 44 44 H 1.08997 * 110.36738 * 216.80533 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 1 3.6057 -3.2119 -0.6197 12 6 4.3130 -2.9972 1.4446 13 6 5.5902 -3.8552 1.3257 14 7 6.3220 -3.3868 0.1397 15 6 7.4828 -3.8955 -0.3187 16 8 7.9530 -3.4903 -1.3606 17 6 8.1934 -4.9723 0.4602 18 1 7.4720 -5.5267 1.0605 19 6 8.9002 -5.9276 -0.5084 20 6 9.4076 -7.1327 0.2823 21 6 10.1972 -6.6808 1.4804 22 7 11.0004 -7.5549 2.0778 23 6 11.7107 -7.2141 3.1319 24 7 11.6571 -5.9986 3.6392 25 6 10.8815 -5.0758 3.0968 26 6 10.1186 -5.3995 1.9805 27 6 9.2457 -4.3388 1.3696 28 6 5.5790 -2.2642 -0.4614 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3622 -0.0007 31 1 3.4652 -3.6084 1.7539 32 1 4.4672 -2.1704 2.1380 33 1 5.3217 -4.9047 1.2050 34 1 6.2064 -3.7281 2.2157 35 1 8.1975 -6.2604 -1.2724 36 1 9.7411 -5.4172 -0.9778 37 1 8.5580 -7.7293 0.6147 38 1 10.0464 -7.7410 -0.3582 39 1 12.3539 -7.9490 3.5932 40 1 10.8407 -4.0815 3.5163 41 1 9.8631 -3.6563 0.7856 42 1 8.7479 -3.7808 2.1626 43 1 5.9643 -1.3136 -0.0926 44 1 5.6443 -2.3049 -1.5486 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968893672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:20 Heat of formation + Delta-G solvation = 0.976066 kcal Electronic energy + Delta-G solvation = -25947.020838 eV Core-core repulsion = 22284.321762 eV Total energy + Delta-G solvation = -3662.699076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40266 -41.19008 -39.03354 -37.56301 -36.03471 -35.06339 -33.56971 -32.50489 -31.68854 -31.00583 -29.49910 -26.53596 -25.64941 -24.85760 -24.09410 -23.90161 -21.83605 -21.57782 -19.96397 -19.71450 -18.71258 -18.29385 -17.81137 -17.49238 -16.61698 -16.32822 -16.04991 -15.82871 -15.55681 -15.15181 -14.92173 -14.85599 -14.69554 -14.56852 -14.41352 -14.04928 -13.82869 -13.49751 -13.40403 -13.21182 -13.18031 -12.89783 -12.72444 -12.29759 -12.14369 -12.10233 -11.95920 -11.85822 -11.80966 -11.61846 -11.37903 -10.98553 -10.80604 -10.21389 -10.18148 -9.67916 -9.34248 -8.02344 -5.37343 -0.09244 0.04823 1.39484 1.42680 1.49238 1.52951 1.88498 2.48673 2.74425 3.02355 3.22659 3.28353 3.35398 3.47983 3.51961 3.60364 3.64848 3.81851 3.88656 4.02016 4.20711 4.22874 4.28604 4.31659 4.33055 4.43311 4.47233 4.55701 4.62600 4.71132 4.78197 4.83908 4.88594 4.98433 5.02567 5.07170 5.15533 5.25617 5.26879 5.41192 5.46510 5.76764 5.99305 6.20885 6.51983 7.05690 7.09490 7.09851 7.80358 7.98726 9.18536 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.027691 B = 0.002547 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.906927 B =10991.028507 C =11212.286306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.951 3.049 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.248 1.248 7 C -0.228 4.228 8 H 0.062 0.938 9 N -0.744 5.744 10 C 0.166 3.834 11 H 0.059 0.941 12 C -0.146 4.146 13 C 0.106 3.894 14 N -0.612 5.612 15 C 0.534 3.466 16 O -0.582 6.582 17 C -0.095 4.095 18 H 0.118 0.882 19 C -0.097 4.097 20 C -0.065 4.065 21 C 0.169 3.831 22 N -0.539 5.539 23 C 0.281 3.719 24 N -0.541 5.541 25 C 0.149 3.851 26 C -0.177 4.177 27 C -0.053 4.053 28 C 0.104 3.896 29 H 0.258 0.742 30 H 0.367 0.633 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.218 0.782 40 H 0.192 0.808 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.837 -14.648 6.944 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.779 3.221 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.173 1.173 7 C -0.359 4.359 8 H 0.080 0.920 9 N -0.387 5.387 10 C 0.057 3.943 11 H 0.077 0.923 12 C -0.187 4.187 13 C -0.016 4.016 14 N -0.345 5.345 15 C 0.324 3.676 16 O -0.461 6.461 17 C -0.116 4.116 18 H 0.136 0.864 19 C -0.135 4.135 20 C -0.103 4.103 21 C 0.026 3.974 22 N -0.253 5.253 23 C -0.006 4.006 24 N -0.255 5.255 25 C -0.018 4.018 26 C -0.181 4.181 27 C -0.092 4.092 28 C -0.020 4.020 29 H 0.067 0.933 30 H 0.201 0.799 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.234 0.766 40 H 0.209 0.791 41 H 0.102 0.898 42 H 0.124 0.876 43 H 0.088 0.912 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 24.537 -15.255 6.796 29.681 hybrid contribution -0.689 1.910 -0.527 2.098 sum 23.848 -13.345 6.269 28.037 Atomic orbital electron populations 1.69869 1.07110 1.26678 1.59509 1.25465 0.96040 1.01157 1.02629 0.85471 0.78829 0.79891 0.77939 1.20892 1.22428 1.17278 1.18960 0.82144 0.93522 1.41281 0.92029 1.42561 1.02610 1.03406 1.90103 1.21473 0.89560 0.87819 0.95468 0.92283 1.23198 0.96980 0.99886 0.98621 1.22246 0.92562 0.99199 0.87602 1.48541 1.22314 1.34084 1.29517 1.20708 0.79223 0.82730 0.84971 1.90698 1.66822 1.63142 1.25483 1.21320 0.98043 0.94713 0.97508 0.86408 1.21408 1.00635 0.94491 0.97004 1.20444 0.99605 0.98081 0.92155 1.21675 0.91605 0.89252 0.94886 1.68442 1.08265 1.37588 1.11039 1.25417 0.93964 0.92490 0.88755 1.68496 1.20988 1.03406 1.32577 1.23731 0.88093 0.99737 0.90216 1.21100 1.01533 0.96602 0.98881 1.20157 0.94927 0.95295 0.98815 1.22302 0.91284 0.89969 0.98455 0.93343 0.79949 0.90370 0.90966 0.89165 0.88590 0.89884 0.91475 0.87376 0.88189 0.76594 0.79074 0.89798 0.87594 0.91247 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.20 13.97 21.65 0.30 -60.90 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.95 43.89 27.73 68.60 1.90 45.79 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.25 -10.15 6.52 99.48 0.65 -9.50 16 7 C -0.23 -12.29 10.47 84.03 0.88 -11.41 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 9 N -0.74 -32.15 5.08 -316.00 -1.61 -33.76 16 10 C 0.17 5.62 3.70 46.46 0.17 5.79 16 11 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 12 C -0.15 -3.86 6.64 31.78 0.21 -3.65 16 13 C 0.11 1.92 6.01 86.73 0.52 2.44 16 14 N -0.61 -14.32 3.32 -811.34 -2.70 -17.02 16 15 C 0.53 12.44 6.84 87.66 0.60 13.04 16 16 O -0.58 -18.52 16.66 -3.03 -0.05 -18.57 16 17 C -0.09 -1.40 2.24 -11.49 -0.03 -1.42 16 18 H 0.12 1.26 6.93 -2.39 -0.02 1.25 16 19 C -0.10 -1.41 4.78 30.63 0.15 -1.27 16 20 C -0.07 -0.80 5.96 29.70 0.18 -0.62 16 21 C 0.17 2.66 6.62 42.21 0.28 2.94 16 22 N -0.54 -9.45 10.32 -188.71 -1.95 -11.39 16 23 C 0.28 4.40 12.29 180.93 2.22 6.62 16 24 N -0.54 -9.12 10.44 -199.93 -2.09 -11.21 16 25 C 0.15 2.06 10.94 84.83 0.93 2.98 16 26 C -0.18 -2.47 5.73 -19.90 -0.11 -2.59 16 27 C -0.05 -0.67 5.02 29.68 0.15 -0.52 16 28 C 0.10 3.07 6.56 86.93 0.57 3.64 16 29 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.37 15.32 5.58 -92.71 -0.52 14.80 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 33 H 0.09 1.28 7.91 -2.39 -0.02 1.26 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.23 8.12 -2.38 -0.02 1.22 16 36 H 0.07 1.17 8.09 -2.39 -0.02 1.15 16 37 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.22 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.08 1.23 8.11 -2.39 -0.02 1.21 16 42 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.07 2.02 8.01 -2.39 -0.02 2.01 16 44 H 0.06 2.11 7.99 -2.39 -0.02 2.09 16 Total: -1.00 -73.40 357.76 1.44 -71.96 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.44 Total: 22.13 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 7.18 Total: 12.97 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -8.04 Total: -134.28 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.90 Total: 45.79 kcal Total: -73.40 1.44 -71.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968893672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.940 kcal (2) G-P(sol) polarization free energy of solvation -73.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds