Wall clock time and date at job start Tue Mar 31 2020 11:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 119.99590 * 2 1 4 4 H 1.48501 * 109.46918 * 239.99956 * 3 2 1 5 5 H 1.48501 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47212 * 119.99893 * 3 2 1 7 7 C 1.38808 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00101 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64926 * 359.96952 * 9 7 2 11 11 C 1.54329 * 107.27117 * 178.98817 * 10 9 7 12 12 C 1.55161 * 102.94099 * 337.80744 * 11 10 9 13 13 H 1.09004 * 111.00192 * 153.60989 * 12 11 10 14 14 N 1.46496 * 111.00755 * 277.42699 * 12 11 10 15 15 C 1.34772 * 120.00115 * 205.00596 * 14 12 11 16 16 O 1.21283 * 119.99934 * 359.97438 * 15 14 12 17 17 C 1.50702 * 120.00025 * 179.97438 * 15 14 12 18 18 H 1.09003 * 109.79484 * 300.50191 * 17 15 14 19 19 C 1.53306 * 109.63659 * 179.97438 * 17 15 14 20 20 C 1.52812 * 108.68235 * 170.61636 * 19 17 15 21 21 C 1.50445 * 110.44673 * 50.93596 * 20 19 17 22 22 N 1.32898 * 118.53668 * 162.32983 * 21 20 19 23 23 C 1.31602 * 121.06648 * 179.77437 * 22 21 20 24 24 N 1.31818 * 121.66888 * 359.96187 * 23 22 21 25 25 C 1.32187 * 120.63893 * 0.11859 * 24 23 22 26 26 C 1.37770 * 122.58437 * 342.26242 * 21 20 19 27 27 C 1.50340 * 122.79658 * 0.66667 * 26 21 20 28 28 C 1.47426 * 125.64841 * 180.02562 * 9 7 2 29 29 H 0.96995 * 120.00310 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.88120 * 59.57526 * 10 9 7 31 31 H 1.08994 * 109.88041 * 298.40336 * 10 9 7 32 32 H 1.08999 * 110.71914 * 219.44453 * 11 10 9 33 33 H 1.09001 * 110.87003 * 96.23799 * 11 10 9 34 34 H 0.97003 * 119.99665 * 24.99421 * 14 12 11 35 35 H 1.09002 * 109.62923 * 50.81012 * 19 17 15 36 36 H 1.09005 * 109.62743 * 290.42458 * 19 17 15 37 37 H 1.08998 * 109.30711 * 171.23120 * 20 19 17 38 38 H 1.09001 * 109.30633 * 290.63590 * 20 19 17 39 39 H 1.07993 * 119.16255 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.35863 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.30541 * 102.71685 * 27 26 21 42 42 H 1.09006 * 109.30626 * 222.11486 * 27 26 21 43 43 H 1.08997 * 110.36889 * 85.23987 * 28 9 7 44 44 H 1.09010 * 110.36655 * 322.91719 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0006 11 6 -0.4483 -4.0442 -0.0254 12 6 0.8522 -4.6564 -0.6098 13 1 0.9837 -5.6857 -0.2761 14 7 0.8589 -4.5767 -2.0726 15 6 1.5907 -5.4506 -2.7917 16 8 2.2441 -6.3027 -2.2278 17 6 1.5972 -5.3690 -4.2965 18 1 0.5835 -5.4939 -4.6773 19 6 2.5017 -6.4669 -4.8681 20 6 2.3121 -6.5176 -6.3836 21 6 2.4626 -5.1439 -6.9784 22 7 2.6847 -5.0384 -8.2844 23 6 2.8198 -3.8614 -8.8574 24 7 2.7405 -2.7419 -8.1659 25 6 2.5230 -2.7692 -6.8624 26 6 2.3778 -3.9950 -6.2229 27 6 2.1424 -4.0122 -4.7381 28 6 1.9336 -3.7311 0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5574 -2.0527 -0.8832 31 1 -0.5542 -2.0841 0.9023 32 1 -1.2983 -4.2519 -0.6754 33 1 -0.6331 -4.4200 0.9809 34 1 0.3365 -3.8951 -2.5236 35 1 2.2301 -7.4286 -4.4328 36 1 3.5427 -6.2411 -4.6367 37 1 3.0587 -7.1822 -6.8182 38 1 1.3171 -6.9012 -6.6097 39 1 3.0000 -3.8115 -9.9210 40 1 2.4585 -1.8492 -6.3003 41 1 3.0829 -3.8199 -4.2219 42 1 1.4259 -3.2330 -4.4778 43 1 2.1665 -4.0413 1.0202 44 1 2.8333 -3.7408 -0.6139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014689708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:58 Heat of formation + Delta-G solvation = 24.991463 kcal Electronic energy + Delta-G solvation = -26569.732390 eV Core-core repulsion = 22908.074700 eV Total energy + Delta-G solvation = -3661.657690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.55066 -39.85599 -37.64457 -36.51782 -34.27465 -33.76385 -31.95421 -31.59095 -30.43444 -29.15858 -27.31828 -25.49375 -24.67927 -24.16191 -23.18487 -21.58980 -20.18983 -19.97781 -19.63286 -18.00185 -17.19799 -17.05545 -16.65936 -15.99530 -15.40961 -15.13326 -14.71220 -14.46795 -14.10874 -14.09874 -13.97811 -13.69852 -13.65603 -13.33174 -13.14492 -12.54903 -12.21596 -12.07030 -11.90880 -11.85617 -11.33607 -11.12599 -11.00739 -10.97969 -10.92928 -10.76045 -10.56383 -10.39280 -10.20277 -10.00567 -9.72450 -9.53943 -9.39014 -9.35095 -8.79237 -8.56728 -6.87414 -5.76984 -3.09807 0.72123 0.86166 2.79270 3.36343 3.40135 3.42055 3.42388 3.56013 3.79150 4.03599 4.25000 4.36607 4.45612 4.46106 4.62561 4.83327 5.05111 5.10711 5.18150 5.21324 5.30609 5.33602 5.42360 5.43759 5.47404 5.59068 5.67473 5.73091 5.79085 5.88509 5.90905 6.06203 6.16116 6.25918 6.32643 6.44555 6.47023 6.63668 6.80102 6.99032 7.47883 7.50938 7.74093 7.81950 7.90177 8.19630 8.45897 9.17007 9.77005 10.42696 11.34709 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.003983 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.090138 B = 7027.376109 C = 8744.677878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.176 3.824 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.090 0.910 14 N -0.702 5.702 15 C 0.519 3.481 16 O -0.547 6.547 17 C -0.107 4.107 18 H 0.100 0.900 19 C -0.098 4.098 20 C -0.072 4.072 21 C 0.178 3.822 22 N -0.524 5.524 23 C 0.285 3.715 24 N -0.522 5.522 25 C 0.153 3.847 26 C -0.173 4.173 27 C -0.067 4.067 28 C 0.126 3.874 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.403 0.597 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.194 0.806 40 H 0.172 0.828 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.027 0.973 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 -11.349 -12.731 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.051 3.949 11 C -0.193 4.193 12 C 0.021 3.979 13 H 0.108 0.892 14 N -0.351 5.351 15 C 0.305 3.695 16 O -0.425 6.425 17 C -0.128 4.128 18 H 0.118 0.882 19 C -0.137 4.137 20 C -0.110 4.110 21 C 0.034 3.966 22 N -0.238 5.238 23 C -0.003 4.003 24 N -0.236 5.236 25 C -0.014 4.014 26 C -0.177 4.177 27 C -0.105 4.105 28 C -0.001 4.001 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.237 0.763 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.211 0.789 40 H 0.189 0.811 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.044 0.956 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.067 -11.673 -13.305 17.732 hybrid contribution 0.031 1.478 0.629 1.607 sum 1.097 -10.195 -12.676 16.305 Atomic orbital electron populations 1.69934 1.04808 1.25127 1.57222 1.24754 0.95686 0.97523 1.02305 0.86232 0.78484 0.83304 0.77936 1.21228 1.21606 1.21207 1.18997 0.90376 0.82394 1.43707 0.90642 1.44464 1.01433 0.99846 1.87283 1.21164 0.84572 0.87902 1.01232 1.23227 0.95717 1.00064 1.00285 1.22150 0.97362 0.99409 0.78958 0.89222 1.45871 1.48340 1.33594 1.07320 1.20308 0.79155 0.81180 0.88901 1.90677 1.42632 1.36616 1.72540 1.21321 1.01955 0.96745 0.92828 0.88236 1.21410 1.00409 0.99242 0.92603 1.20466 1.04008 0.91256 0.95233 1.21376 0.90342 0.95879 0.89004 1.68385 1.14274 1.29532 1.11561 1.24876 0.91767 0.82756 1.00883 1.68435 1.14095 1.32739 1.08287 1.23395 0.89811 0.97862 0.90309 1.21129 1.03279 0.94865 0.98384 1.20304 1.03377 0.96973 0.89844 1.21931 0.94747 0.86393 0.97069 0.93735 0.93608 0.93815 0.91652 0.91007 0.76284 0.89369 0.90652 0.88806 0.89058 0.78948 0.81104 0.89012 0.88914 0.95557 0.94012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.78 10.31 55.49 0.57 -25.21 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.04 10.28 -15.06 -0.15 -6.20 16 8 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -14.43 3.39 -170.07 -0.58 -15.01 16 10 C 0.18 3.91 5.36 -3.06 -0.02 3.89 16 11 C -0.15 -2.58 6.55 -24.89 -0.16 -2.74 16 12 C 0.13 2.12 3.43 -65.78 -0.23 1.89 16 13 H 0.09 1.47 7.54 -51.93 -0.39 1.08 16 14 N -0.70 -10.31 5.10 -51.73 -0.26 -10.58 16 15 C 0.52 7.34 7.13 -10.99 -0.08 7.26 16 16 O -0.55 -9.48 15.49 5.55 0.09 -9.40 16 17 C -0.11 -1.13 2.55 -91.74 -0.23 -1.36 16 18 H 0.10 0.89 8.11 -51.93 -0.42 0.47 16 19 C -0.10 -0.97 4.69 -26.67 -0.12 -1.10 16 20 C -0.07 -0.64 5.96 -28.10 -0.17 -0.80 16 21 C 0.18 1.95 6.62 -82.43 -0.55 1.40 16 22 N -0.52 -6.05 10.32 -11.00 -0.11 -6.17 16 23 C 0.29 3.08 12.29 -92.30 -1.13 1.95 16 24 N -0.52 -6.27 10.44 -14.55 -0.15 -6.42 16 25 C 0.15 1.72 10.94 -17.11 -0.19 1.53 16 26 C -0.17 -1.87 5.74 -104.68 -0.60 -2.48 16 27 C -0.07 -0.70 4.90 -28.19 -0.14 -0.84 16 28 C 0.13 2.54 6.93 -2.53 -0.02 2.53 16 29 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.05 1.10 7.38 -51.93 -0.38 0.72 16 31 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.40 5.58 8.36 -40.82 -0.34 5.23 16 35 H 0.09 0.88 7.82 -51.93 -0.41 0.47 16 36 H 0.07 0.83 8.11 -51.93 -0.42 0.40 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.17 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 42 H 0.09 0.95 7.89 -51.93 -0.41 0.54 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.04 0.88 8.14 -51.92 -0.42 0.45 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -31.76 356.71 -10.49 -42.26 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.51 Total: 4.06 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -3.88 Total: 4.66 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.53 Total: -63.38 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.76 -10.49 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014689708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.248 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds