Wall clock time and date at job start Tue Mar 31 2020 11:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 119.99590 * 2 1 4 4 H 1.48501 * 109.46918 * 239.99956 * 3 2 1 5 5 H 1.48501 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47212 * 119.99893 * 3 2 1 7 7 C 1.38808 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00101 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.47022 * 125.64926 * 359.96952 * 9 7 2 11 11 C 1.54329 * 107.27117 * 178.98817 * 10 9 7 12 12 C 1.55161 * 102.94099 * 337.80744 * 11 10 9 13 13 H 1.09004 * 111.00192 * 153.60989 * 12 11 10 14 14 N 1.46496 * 111.00755 * 277.42699 * 12 11 10 15 15 C 1.34772 * 120.00115 * 205.00596 * 14 12 11 16 16 O 1.21283 * 119.99934 * 359.97438 * 15 14 12 17 17 C 1.50702 * 120.00025 * 179.97438 * 15 14 12 18 18 H 1.09003 * 109.79484 * 300.50191 * 17 15 14 19 19 C 1.53306 * 109.63659 * 179.97438 * 17 15 14 20 20 C 1.52812 * 108.68235 * 170.61636 * 19 17 15 21 21 C 1.50445 * 110.44673 * 50.93596 * 20 19 17 22 22 N 1.32898 * 118.53668 * 162.32983 * 21 20 19 23 23 C 1.31602 * 121.06648 * 179.77437 * 22 21 20 24 24 N 1.31818 * 121.66888 * 359.96187 * 23 22 21 25 25 C 1.32187 * 120.63893 * 0.11859 * 24 23 22 26 26 C 1.37770 * 122.58437 * 342.26242 * 21 20 19 27 27 C 1.50340 * 122.79658 * 0.66667 * 26 21 20 28 28 C 1.47426 * 125.64841 * 180.02562 * 9 7 2 29 29 H 0.96995 * 120.00310 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.88120 * 59.57526 * 10 9 7 31 31 H 1.08994 * 109.88041 * 298.40336 * 10 9 7 32 32 H 1.08999 * 110.71914 * 219.44453 * 11 10 9 33 33 H 1.09001 * 110.87003 * 96.23799 * 11 10 9 34 34 H 0.97003 * 119.99665 * 24.99421 * 14 12 11 35 35 H 1.09002 * 109.62923 * 50.81012 * 19 17 15 36 36 H 1.09005 * 109.62743 * 290.42458 * 19 17 15 37 37 H 1.08998 * 109.30711 * 171.23120 * 20 19 17 38 38 H 1.09001 * 109.30633 * 290.63590 * 20 19 17 39 39 H 1.07993 * 119.16255 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.35863 * 180.02562 * 25 24 23 41 41 H 1.08998 * 109.30541 * 102.71685 * 27 26 21 42 42 H 1.09006 * 109.30626 * 222.11486 * 27 26 21 43 43 H 1.08997 * 110.36889 * 85.23987 * 28 9 7 44 44 H 1.09010 * 110.36655 * 322.91719 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0006 11 6 -0.4483 -4.0442 -0.0254 12 6 0.8522 -4.6564 -0.6098 13 1 0.9837 -5.6857 -0.2761 14 7 0.8589 -4.5767 -2.0726 15 6 1.5907 -5.4506 -2.7917 16 8 2.2441 -6.3027 -2.2278 17 6 1.5972 -5.3690 -4.2965 18 1 0.5835 -5.4939 -4.6773 19 6 2.5017 -6.4669 -4.8681 20 6 2.3121 -6.5176 -6.3836 21 6 2.4626 -5.1439 -6.9784 22 7 2.6847 -5.0384 -8.2844 23 6 2.8198 -3.8614 -8.8574 24 7 2.7405 -2.7419 -8.1659 25 6 2.5230 -2.7692 -6.8624 26 6 2.3778 -3.9950 -6.2229 27 6 2.1424 -4.0122 -4.7381 28 6 1.9336 -3.7311 0.0016 29 1 -0.4850 0.8400 0.0004 30 1 -0.5574 -2.0527 -0.8832 31 1 -0.5542 -2.0841 0.9023 32 1 -1.2983 -4.2519 -0.6754 33 1 -0.6331 -4.4200 0.9809 34 1 0.3365 -3.8951 -2.5236 35 1 2.2301 -7.4286 -4.4328 36 1 3.5427 -6.2411 -4.6367 37 1 3.0587 -7.1822 -6.8182 38 1 1.3171 -6.9012 -6.6097 39 1 3.0000 -3.8115 -9.9210 40 1 2.4585 -1.8492 -6.3003 41 1 3.0829 -3.8199 -4.2219 42 1 1.4259 -3.2330 -4.4778 43 1 2.1665 -4.0413 1.0202 44 1 2.8333 -3.7408 -0.6139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014689708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:57 Heat of formation + Delta-G solvation = 5.605878 kcal Electronic energy + Delta-G solvation = -26570.573012 eV Core-core repulsion = 22908.074700 eV Total energy + Delta-G solvation = -3662.498312 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.39441 -41.03101 -39.07099 -37.56264 -35.41020 -35.06029 -33.60582 -32.44909 -31.49705 -30.76046 -28.90627 -26.62263 -26.17360 -25.21187 -24.00634 -22.69582 -21.91861 -21.29940 -20.69160 -19.04078 -18.71819 -18.05689 -17.75050 -17.30403 -16.63057 -16.43689 -16.05940 -15.72110 -15.53777 -15.09371 -14.95125 -14.88983 -14.77574 -14.43362 -14.13579 -13.84361 -13.79153 -13.53714 -13.15207 -12.87169 -12.85806 -12.76663 -12.25927 -12.20157 -12.07257 -12.00452 -11.95246 -11.85356 -11.77121 -11.55595 -11.37498 -10.71817 -10.68672 -10.23177 -10.19987 -10.00461 -8.83314 -7.82797 -5.16431 -0.10486 0.01842 1.47763 1.48950 1.55359 1.65662 2.26499 2.50879 2.72676 3.02438 3.25002 3.36313 3.43366 3.48802 3.61269 3.70687 3.75397 3.87685 3.98899 4.12067 4.25014 4.27672 4.34173 4.38624 4.46525 4.55763 4.65755 4.71540 4.79194 4.81041 4.90301 4.93898 5.02656 5.07418 5.08953 5.13089 5.26679 5.46104 5.47268 5.62699 5.71551 5.80376 5.97051 6.22451 6.64707 7.07338 7.14500 7.30150 7.80357 8.44309 9.26704 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.003983 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.090138 B = 7027.376109 C = 8744.677878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.055 4.055 3 Si 0.969 3.031 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.619 5.619 10 C 0.184 3.816 11 C -0.135 4.135 12 C 0.141 3.859 13 H 0.102 0.898 14 N -0.701 5.701 15 C 0.521 3.479 16 O -0.578 6.578 17 C -0.098 4.098 18 H 0.125 0.875 19 C -0.092 4.092 20 C -0.064 4.064 21 C 0.172 3.828 22 N -0.536 5.536 23 C 0.281 3.719 24 N -0.542 5.542 25 C 0.144 3.856 26 C -0.176 4.176 27 C -0.059 4.059 28 C 0.123 3.877 29 H 0.247 0.753 30 H 0.023 0.977 31 H 0.006 0.994 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.408 0.592 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.221 0.779 40 H 0.181 0.819 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.027 0.973 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 -12.502 -13.903 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.210 1.210 7 C -0.369 4.369 8 H 0.091 0.909 9 N -0.346 5.346 10 C 0.059 3.941 11 C -0.173 4.173 12 C 0.035 3.965 13 H 0.120 0.880 14 N -0.350 5.350 15 C 0.309 3.691 16 O -0.457 6.457 17 C -0.119 4.119 18 H 0.143 0.857 19 C -0.131 4.131 20 C -0.102 4.102 21 C 0.028 3.972 22 N -0.250 5.250 23 C -0.006 4.006 24 N -0.255 5.255 25 C -0.022 4.022 26 C -0.180 4.180 27 C -0.097 4.097 28 C -0.004 4.004 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.024 0.976 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.244 0.756 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.237 0.763 40 H 0.198 0.802 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.045 0.955 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.801 -12.845 -14.489 19.380 hybrid contribution 0.176 1.823 1.005 2.089 sum 0.978 -11.021 -13.485 17.443 Atomic orbital electron populations 1.70128 1.05871 1.25205 1.58153 1.25441 0.96482 1.00270 1.02639 0.85301 0.77280 0.79603 0.78019 1.20403 1.21978 1.21002 1.19285 0.90653 0.83829 1.43144 0.90924 1.44679 1.02399 1.00464 1.87018 1.20949 0.83427 0.91408 0.98282 1.23075 0.96647 0.95595 1.02008 1.21924 0.95603 0.98910 0.80089 0.87977 1.45865 1.48633 1.33968 1.06546 1.20858 0.77917 0.80142 0.90210 1.90667 1.43734 1.37863 1.73484 1.21309 1.03605 0.96911 0.90040 0.85695 1.21347 0.99343 0.98960 0.93410 1.20469 1.05359 0.90302 0.94026 1.21738 0.89666 0.96710 0.89051 1.68457 1.14893 1.29810 1.11815 1.25464 0.90784 0.82334 1.02062 1.68481 1.14979 1.33430 1.08658 1.23639 0.89593 0.98551 0.90446 1.21090 1.03831 0.94912 0.98214 1.20197 1.02699 0.97129 0.89725 1.22052 0.95456 0.85657 0.97209 0.94403 0.95887 0.97613 0.88786 0.89521 0.75649 0.89091 0.92110 0.87942 0.87175 0.76267 0.80196 0.90545 0.88630 0.95543 0.95185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.73 10.31 21.65 0.22 -53.50 16 2 C -0.05 -2.98 5.49 84.86 0.47 -2.52 16 3 Si 0.97 44.42 29.55 68.60 2.03 46.45 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.24 -12.96 10.28 84.03 0.86 -12.10 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.62 -29.86 3.39 -691.99 -2.35 -32.21 16 10 C 0.18 8.22 5.36 86.73 0.47 8.68 16 11 C -0.13 -4.25 6.55 31.79 0.21 -4.04 16 12 C 0.14 4.47 3.43 46.38 0.16 4.63 16 13 H 0.10 3.10 7.54 -2.39 -0.02 3.08 16 14 N -0.70 -19.43 5.10 -435.97 -2.22 -21.65 16 15 C 0.52 13.89 7.13 87.66 0.63 14.51 16 16 O -0.58 -19.25 15.49 -3.04 -0.05 -19.30 16 17 C -0.10 -1.87 2.55 -11.52 -0.03 -1.90 16 18 H 0.13 1.83 8.11 -2.39 -0.02 1.81 16 19 C -0.09 -1.65 4.69 30.63 0.14 -1.51 16 20 C -0.06 -0.98 5.96 29.71 0.18 -0.80 16 21 C 0.17 3.46 6.62 42.21 0.28 3.74 16 22 N -0.54 -11.42 10.32 -188.72 -1.95 -13.37 16 23 C 0.28 5.64 12.29 180.93 2.22 7.87 16 24 N -0.54 -12.44 10.44 -199.94 -2.09 -14.52 16 25 C 0.14 3.12 10.94 84.83 0.93 4.05 16 26 C -0.18 -3.62 5.74 -19.90 -0.11 -3.73 16 27 C -0.06 -1.18 4.90 29.65 0.15 -1.04 16 28 C 0.12 4.93 6.93 86.85 0.60 5.53 16 29 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 30 H 0.02 1.12 7.38 -2.39 -0.02 1.10 16 31 H 0.01 0.29 7.50 -2.39 -0.02 0.27 16 32 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.41 10.61 8.36 -92.71 -0.78 9.84 16 35 H 0.09 1.62 7.82 -2.39 -0.02 1.60 16 36 H 0.06 1.27 8.11 -2.38 -0.02 1.25 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.22 2.85 8.06 -2.91 -0.02 2.83 16 40 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 41 H 0.08 1.78 8.10 -2.39 -0.02 1.76 16 42 H 0.10 1.86 7.89 -2.38 -0.02 1.84 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 44 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -68.71 356.71 0.97 -67.74 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.24 Total: 19.01 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 7.14 Total: 21.37 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -8.39 Total: -135.26 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.05 Total: -19.30 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -68.71 0.97 -67.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014689708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.345 kcal (2) G-P(sol) polarization free energy of solvation -68.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds