Wall clock time and date at job start Tue Mar 31 2020 11:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35908 * 117.00027 * 2 1 4 4 C 1.38850 * 119.98546 * 359.97438 * 3 2 1 5 5 C 1.38244 * 120.23888 * 180.02562 * 4 3 2 6 6 C 1.38008 * 120.20957 * 359.69448 * 5 4 3 7 7 C 1.39564 * 119.95816 * 0.58334 * 6 5 4 8 8 C 1.47862 * 120.11262 * 179.72175 * 7 6 5 9 9 O 1.21551 * 119.99779 * 146.95152 * 8 7 6 10 10 N 1.34775 * 120.00204 * 326.94248 * 8 7 6 11 11 C 1.47156 * 120.70921 * 183.96894 * 10 8 7 12 12 C 1.53885 * 108.02937 * 132.75915 * 11 10 8 13 13 H 1.08999 * 112.09967 * 181.91044 * 12 11 10 14 14 C 1.54545 * 107.82966 * 305.86981 * 12 11 10 15 15 C 1.55851 * 104.09475 * 89.27831 * 14 12 11 16 16 C 1.54541 * 105.00191 * 359.97438 * 15 14 12 17 17 H 1.09000 * 112.18613 * 146.41812 * 16 15 14 18 18 C 1.48427 * 120.83286 * 4.35608 * 10 8 7 19 19 N 1.48307 * 104.35652 * 24.71698 * 16 15 14 20 20 C 1.36938 * 128.08451 * 139.04835 * 19 16 15 21 21 H 1.07999 * 119.99281 * 344.91017 * 20 19 16 22 22 C 1.38801 * 120.00488 * 164.91379 * 20 19 16 23 23 N 1.31619 * 120.00006 * 350.19934 * 22 20 19 24 24 Si 1.86807 * 120.00178 * 170.20266 * 22 20 19 25 25 H 1.48495 * 109.46890 * 59.99847 * 24 22 20 26 26 H 1.48500 * 109.47043 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46710 * 299.99680 * 24 22 20 28 28 C 1.38450 * 119.98438 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47384 * 299.99663 * 1 2 3 30 30 H 1.09005 * 109.47503 * 59.99418 * 1 2 3 31 31 H 1.08996 * 109.47541 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.88020 * 359.97438 * 4 3 2 33 33 H 1.08006 * 119.89661 * 179.97438 * 5 4 3 34 34 H 1.07996 * 120.02351 * 180.30683 * 6 5 4 35 35 H 1.08999 * 109.75704 * 13.12834 * 11 10 8 36 36 H 1.09006 * 109.75188 * 252.38781 * 11 10 8 37 37 H 1.09001 * 110.36389 * 207.91587 * 14 12 11 38 38 H 1.08994 * 110.36558 * 330.22719 * 14 12 11 39 39 H 1.09005 * 110.28529 * 241.09215 * 15 14 12 40 40 H 1.09005 * 110.29826 * 118.87971 * 15 14 12 41 41 H 1.08997 * 110.58002 * 107.74824 * 18 10 8 42 42 H 1.09005 * 109.60791 * 346.62717 * 18 10 8 43 43 H 0.97005 * 120.00106 * 180.02562 * 23 22 20 44 44 H 1.07999 * 120.10397 * 0.02999 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2895 2.3753 -0.0005 5 6 1.9116 3.6098 -0.0011 6 6 3.2892 3.6931 0.0053 7 6 4.0579 2.5283 0.0000 8 6 5.5341 2.6137 0.0005 9 8 6.1917 1.7652 0.5708 10 7 6.1505 3.6321 -0.6313 11 6 7.6186 3.6861 -0.7151 12 6 8.0013 4.0031 -2.1715 13 1 9.0815 4.0259 -2.3160 14 6 7.3131 2.9590 -3.0795 15 6 5.9290 3.5955 -3.4083 16 6 5.9260 4.9514 -2.6669 17 1 5.3727 5.7168 -3.2111 18 6 5.3659 4.7291 -1.2512 19 7 7.3615 5.2944 -2.5218 20 6 7.9575 6.5176 -2.6761 21 1 7.4250 7.3198 -3.1653 22 6 9.2459 6.7264 -2.2039 23 7 9.8225 5.8211 -1.4421 24 14 10.1616 8.2925 -2.6494 25 1 9.4025 9.4681 -2.1527 26 1 11.5089 8.2728 -2.0252 27 1 10.3016 8.3812 -4.1251 28 6 3.4286 1.2830 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2111 2.3162 -0.0014 33 1 1.3178 4.5119 -0.0019 34 1 3.7721 4.6591 0.0098 35 1 8.0399 2.7236 -0.4248 36 1 7.9967 4.4681 -0.0564 37 1 7.8916 2.8091 -3.9911 38 1 7.1908 2.0156 -2.5476 39 1 5.1237 2.9600 -3.0398 40 1 5.8296 3.7502 -4.4827 41 1 5.4622 5.6454 -0.6689 42 1 4.3167 4.4396 -1.3115 43 1 10.7228 5.9672 -1.1118 44 1 4.0182 0.3782 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029563813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:02 Heat of formation + Delta-G solvation = 18.490967 kcal Electronic energy + Delta-G solvation = -27383.614913 eV Core-core repulsion = 23689.382589 eV Total energy + Delta-G solvation = -3694.232324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.64641 -39.67231 -37.96259 -36.96703 -33.81067 -32.35098 -31.39221 -31.03575 -29.83762 -29.16043 -27.55483 -26.35150 -24.19853 -24.04162 -22.67450 -22.34253 -20.07392 -19.68201 -18.93349 -18.04573 -16.77246 -16.45106 -16.31263 -15.93291 -15.47190 -15.34690 -15.07833 -14.59788 -14.06184 -13.85451 -13.68619 -13.41147 -13.06105 -13.02415 -12.80758 -12.66353 -12.34331 -12.00453 -11.72974 -11.60508 -11.46694 -11.27202 -11.09287 -10.94806 -10.86493 -10.66702 -10.32354 -10.05381 -9.86420 -9.68927 -9.57007 -9.34127 -9.01546 -8.77891 -8.26735 -8.05720 -6.84395 -5.84961 -3.20507 0.92622 1.32880 2.96728 3.15035 3.35138 3.40754 3.41716 3.60147 3.86472 4.40617 4.62472 4.65034 4.87169 4.89120 4.93141 5.09334 5.20391 5.21408 5.31333 5.33634 5.44076 5.59169 5.71472 5.76943 5.82461 5.85878 5.95713 6.11065 6.19419 6.24824 6.32511 6.34657 6.39813 6.51215 6.53487 6.65052 6.71383 6.80202 6.88317 6.97698 7.22641 7.29422 7.48934 7.68575 8.03741 8.13391 8.65984 9.04316 9.66762 10.43604 11.27814 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.027070 B = 0.003519 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.088620 B = 7955.621306 C = 8192.619170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.117 3.883 4 C -0.193 4.193 5 C -0.089 4.089 6 C -0.137 4.137 7 C -0.078 4.078 8 C 0.547 3.453 9 O -0.552 6.552 10 N -0.581 5.581 11 C 0.112 3.888 12 C 0.167 3.833 13 H 0.119 0.881 14 C -0.137 4.137 15 C -0.122 4.122 16 C 0.133 3.867 17 H 0.077 0.923 18 C 0.067 3.933 19 N -0.584 5.584 20 C -0.229 4.229 21 H 0.076 0.924 22 C -0.002 4.002 23 N -0.912 5.912 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C -0.099 4.099 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.149 0.851 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.256 0.744 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.970 -6.436 0.772 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.072 3.928 4 C -0.212 4.212 5 C -0.107 4.107 6 C -0.156 4.156 7 C -0.081 4.081 8 C 0.334 3.666 9 O -0.432 6.432 10 N -0.312 5.312 11 C -0.011 4.011 12 C 0.060 3.940 13 H 0.136 0.864 14 C -0.176 4.176 15 C -0.161 4.161 16 C 0.024 3.976 17 H 0.095 0.905 18 C -0.057 4.057 19 N -0.305 5.305 20 C -0.357 4.357 21 H 0.094 0.906 22 C -0.200 4.200 23 N -0.558 5.558 24 Si 0.742 3.258 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.119 4.119 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.166 0.834 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.066 0.934 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.250 -6.882 1.103 18.605 hybrid contribution 0.140 1.024 -0.128 1.041 sum -17.110 -5.858 0.975 18.111 Atomic orbital electron populations 1.23045 0.78510 1.03890 1.01282 1.86092 1.21239 1.26767 1.88929 1.18828 0.91976 0.84294 0.97740 1.21343 0.99976 0.92401 1.07499 1.20896 0.94306 0.97099 0.98397 1.21828 0.93953 0.98845 1.00951 1.19843 0.93886 0.93229 1.01142 1.18188 0.86678 0.82049 0.79677 1.90739 1.66413 1.40847 1.45217 1.48419 1.08593 1.21728 1.52440 1.22500 0.76154 1.01455 1.00966 1.21872 0.99523 0.83471 0.89181 0.86389 1.22904 0.96283 0.98500 0.99926 1.22717 0.97193 0.96923 0.99284 1.21963 0.88471 0.94818 0.92337 0.90456 1.23593 0.95460 0.89581 0.97025 1.45158 0.99979 1.04410 1.80946 1.18939 0.97600 0.87864 1.31266 0.90632 1.24837 0.98381 0.98249 0.98483 1.69831 1.14901 1.34922 1.36137 0.86210 0.79059 0.82540 0.77957 1.21123 1.21606 1.21191 1.20391 0.91197 0.98046 1.02239 0.92696 0.92652 0.88291 0.85385 0.85193 0.83370 0.91259 0.90073 0.92757 0.92766 0.92964 0.92662 0.91038 0.88935 0.93384 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.69 10.49 -19.45 -0.20 -3.90 16 3 C 0.12 1.48 6.68 -39.28 -0.26 1.22 16 4 C -0.19 -2.03 9.03 -39.35 -0.36 -2.38 16 5 C -0.09 -0.94 10.03 -39.66 -0.40 -1.34 16 6 C -0.14 -1.79 7.43 -39.17 -0.29 -2.08 16 7 C -0.08 -1.23 5.54 -104.98 -0.58 -1.81 16 8 C 0.55 10.53 7.46 -12.32 -0.09 10.44 16 9 O -0.55 -12.35 16.26 5.32 0.09 -12.27 16 10 N -0.58 -11.26 2.26 -171.62 -0.39 -11.65 16 11 C 0.11 2.48 5.78 -3.22 -0.02 2.46 16 12 C 0.17 3.79 3.10 -65.66 -0.20 3.58 16 13 H 0.12 3.04 6.35 -51.93 -0.33 2.71 16 14 C -0.14 -2.68 6.31 -24.40 -0.15 -2.83 16 15 C -0.12 -2.16 6.22 -24.40 -0.15 -2.31 16 16 C 0.13 2.51 4.27 -65.68 -0.28 2.23 16 17 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 18 C 0.07 1.16 4.37 -2.53 -0.01 1.15 16 19 N -0.58 -13.64 2.80 -152.62 -0.43 -14.07 16 20 C -0.23 -5.89 10.37 -15.06 -0.16 -6.04 16 21 H 0.08 1.89 7.85 -52.49 -0.41 1.47 16 22 C 0.00 -0.05 5.41 -17.43 -0.09 -0.15 16 23 N -0.91 -24.94 10.41 55.49 0.58 -24.36 16 24 Si 0.91 21.05 29.57 -169.99 -5.03 16.02 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 28 C -0.10 -1.49 9.54 -39.02 -0.37 -1.86 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.13 0.97 6.28 -52.49 -0.33 0.64 16 33 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.15 1.86 5.19 -52.49 -0.27 1.58 16 35 H 0.07 1.56 7.14 -51.93 -0.37 1.19 16 36 H 0.08 2.04 7.81 -51.93 -0.41 1.63 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.05 7.84 -51.93 -0.41 0.64 16 39 H 0.05 0.86 7.86 -51.93 -0.41 0.46 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.28 8.06 -51.93 -0.42 0.86 16 42 H 0.09 1.32 3.91 -51.93 -0.20 1.12 16 43 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.14 2.15 7.97 -52.49 -0.42 1.73 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -30.46 344.97 -8.63 -39.09 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.02 Total: 4.47 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.43 Total: 1.46 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.24 Total: -50.08 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.12 Total: -16.16 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.46 -8.63 -39.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029563813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.584 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds