Wall clock time and date at job start Tue Mar 31 2020 11:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 119.99939 * 2 1 4 4 O 1.21287 * 120.00014 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00369 * 0.02562 * 3 2 1 6 6 H 1.09001 * 110.81038 * 58.30251 * 5 3 2 7 7 C 1.54717 * 110.74354 * 294.99628 * 5 3 2 8 8 C 1.51644 * 101.90076 * 216.31062 * 7 5 3 9 9 C 1.37740 * 132.17315 * 195.69338 * 8 7 5 10 10 C 1.38357 * 119.97703 * 179.64755 * 9 8 7 11 11 C 1.38279 * 119.76155 * 359.97084 * 10 9 8 12 12 C 1.37934 * 120.35672 * 0.19364 * 11 10 9 13 13 C 1.38877 * 107.03294 * 15.69735 * 8 7 5 14 14 O 1.36130 * 111.25578 * 0.60761 * 13 8 7 15 15 C 1.46504 * 120.00003 * 180.02562 * 2 1 3 16 16 H 1.09003 * 110.63807 * 180.69688 * 15 2 1 17 17 C 1.55155 * 110.71867 * 57.55571 * 15 2 1 18 18 C 1.55381 * 101.36682 * 277.04431 * 17 15 2 19 19 N 1.47420 * 104.87441 * 323.01698 * 18 17 15 20 20 C 1.36944 * 125.65268 * 204.17028 * 19 18 17 21 21 H 1.07997 * 120.00297 * 179.97438 * 20 19 18 22 22 C 1.38808 * 119.99585 * 359.95479 * 20 19 18 23 23 N 1.31621 * 120.00129 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00052 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47070 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47254 * 120.00321 * 24 22 20 27 27 H 1.48498 * 109.47529 * 240.00330 * 24 22 20 28 28 C 1.47021 * 108.70502 * 24.13427 * 19 18 17 29 29 H 1.09000 * 109.47165 * 89.99643 * 1 2 3 30 30 H 1.09003 * 109.46652 * 209.99783 * 1 2 3 31 31 H 1.09007 * 109.46719 * 329.99375 * 1 2 3 32 32 H 1.08998 * 110.94136 * 334.46503 * 7 5 3 33 33 H 1.09002 * 110.94222 * 98.15785 * 7 5 3 34 34 H 1.08001 * 120.01451 * 359.64047 * 9 8 7 35 35 H 1.07994 * 120.11629 * 179.97438 * 10 9 8 36 36 H 1.08008 * 119.82441 * 180.18247 * 11 10 9 37 37 H 1.08002 * 119.87771 * 179.97438 * 12 11 10 38 38 H 1.09005 * 111.00478 * 35.21304 * 17 15 2 39 39 H 1.09001 * 111.00395 * 159.06428 * 17 15 2 40 40 H 1.09009 * 110.34362 * 204.16737 * 18 17 15 41 41 H 1.09001 * 110.44461 * 81.92171 * 18 17 15 42 42 H 0.97002 * 120.00059 * 179.97438 * 23 22 20 43 43 H 1.09005 * 109.88852 * 239.52753 * 28 19 18 44 44 H 1.09000 * 109.88436 * 118.35412 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3518 1.1672 -0.0005 5 6 1.3855 2.4723 0.0006 6 1 0.7285 2.5399 0.8678 7 6 0.5815 2.6415 -1.3104 8 6 0.7046 4.1318 -1.5626 9 6 0.0112 4.9907 -2.3864 10 6 0.3362 6.3352 -2.4141 11 6 1.3575 6.8112 -1.6124 12 6 2.0554 5.9522 -0.7892 13 6 1.7375 4.5964 -0.7589 14 8 2.2946 3.5853 -0.0375 15 6 2.1976 -1.2688 -0.0006 16 1 3.2730 -1.0915 0.0119 17 6 1.7978 -2.1328 -1.2256 18 6 0.4959 -2.8081 -0.7124 19 7 0.7470 -3.0782 0.7149 20 6 0.1268 -4.0405 1.4664 21 1 0.3824 -4.1598 2.5088 22 6 -0.8308 -4.8623 0.8882 23 7 -1.1423 -4.7171 -0.3824 24 14 -1.6765 -6.1755 1.9129 25 1 -1.1516 -6.1341 3.3015 26 1 -3.1400 -5.9241 1.9297 27 1 -1.4106 -7.5118 1.3224 28 6 1.7744 -2.1440 1.1979 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.0337 2.0704 -2.1212 33 1 -0.4606 2.3552 -1.1681 34 1 -0.7860 4.6147 -3.0107 35 1 -0.2057 7.0106 -3.0595 36 1 1.6101 7.8611 -1.6310 37 1 2.8519 6.3322 -0.1666 38 1 1.6005 -1.5080 -2.0968 39 1 2.5635 -2.8767 -1.4457 40 1 0.3153 -3.7397 -1.2488 41 1 -0.3533 -2.1344 -0.8273 42 1 -1.8113 -5.2916 -0.7865 43 1 2.6340 -2.6996 1.5729 44 1 1.3626 -1.5163 1.9882 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033249409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:57 Heat of formation + Delta-G solvation = 8.832268 kcal Electronic energy + Delta-G solvation = -26653.600697 eV Core-core repulsion = 22958.949540 eV Total energy + Delta-G solvation = -3694.651157 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58607 -39.71802 -37.80971 -37.08446 -34.65318 -33.02624 -32.06726 -30.26659 -29.96178 -29.05896 -27.93001 -26.35767 -24.93160 -23.99505 -22.54060 -21.90159 -20.81678 -20.20316 -18.78860 -17.94902 -17.22681 -17.07245 -16.71676 -16.37774 -15.93265 -15.06409 -14.75690 -14.60347 -14.34453 -13.83953 -13.76516 -13.51156 -13.35502 -13.29048 -12.93602 -12.64805 -12.32230 -12.28434 -12.01657 -11.93391 -11.82250 -11.62579 -11.36484 -11.12426 -11.01483 -10.95790 -10.88011 -10.36719 -10.15044 -9.92640 -9.61910 -9.52076 -9.14047 -8.73760 -8.38464 -8.35588 -6.92255 -5.73296 -3.15469 1.03759 1.14504 2.51805 2.62117 3.34318 3.35616 3.41352 3.43117 3.54987 4.09602 4.23472 4.42743 4.55034 4.65196 4.76095 4.82585 5.00556 5.14015 5.28357 5.30854 5.36891 5.38937 5.43394 5.45389 5.52048 5.64001 5.74067 5.77915 5.83446 6.06717 6.09786 6.16939 6.22965 6.24817 6.27415 6.35657 6.49318 6.51538 6.64256 6.89205 6.99381 7.38450 7.53166 7.56457 7.77489 8.21271 8.27800 9.14095 9.74361 10.38223 11.30194 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.027650 B = 0.002870 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.400002 B = 9752.995216 C =10195.217691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.586 5.586 3 C 0.517 3.483 4 O -0.526 6.526 5 C 0.067 3.933 6 H 0.113 0.887 7 C -0.098 4.098 8 C -0.173 4.173 9 C -0.067 4.067 10 C -0.152 4.152 11 C -0.086 4.086 12 C -0.138 4.138 13 C 0.108 3.892 14 O -0.275 6.275 15 C 0.126 3.874 16 H 0.101 0.899 17 C -0.155 4.155 18 C 0.145 3.855 19 N -0.603 5.603 20 C -0.222 4.222 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.127 3.873 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.021 0.979 42 H 0.252 0.748 43 H 0.035 0.965 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 19.738 -4.132 20.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.320 5.320 3 C 0.303 3.697 4 O -0.403 6.403 5 C 0.007 3.993 6 H 0.131 0.869 7 C -0.135 4.135 8 C -0.174 4.174 9 C -0.085 4.085 10 C -0.170 4.170 11 C -0.104 4.104 12 C -0.157 4.157 13 C 0.063 3.937 14 O -0.188 6.188 15 C 0.023 3.977 16 H 0.119 0.881 17 C -0.194 4.194 18 C 0.021 3.979 19 N -0.330 5.330 20 C -0.351 4.351 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.570 5.570 24 Si 0.745 3.255 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.000 4.000 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.124 0.876 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.436 19.530 -4.010 19.989 hybrid contribution -0.700 -0.739 0.498 1.133 sum 0.736 18.791 -3.512 19.131 Atomic orbital electron populations 1.22230 0.78922 1.04328 1.02316 1.47705 1.07436 1.05062 1.71754 1.19904 0.87880 0.84479 0.77474 1.90716 1.13408 1.86887 1.49242 1.23187 0.89960 0.85900 1.00221 0.86944 1.21801 1.02205 0.92900 0.96607 1.20763 1.00369 0.95301 1.00995 1.20327 0.98546 0.92644 0.97014 1.21033 0.99313 0.95241 1.01391 1.20876 0.95089 0.99355 0.95034 1.20271 1.03313 0.88958 1.03139 1.19671 0.92731 0.89651 0.91688 1.86941 1.40340 1.21995 1.69491 1.22206 0.96458 0.81635 0.97404 0.88138 1.23445 1.01781 0.98371 0.95841 1.22193 0.90277 1.00392 0.85052 1.44554 1.43900 1.37096 1.07400 1.19116 1.15174 1.07767 0.92995 0.90426 1.24774 0.99532 0.99840 0.96380 1.69801 1.35494 1.41202 1.10487 0.86007 0.79062 0.81407 0.79058 1.20552 1.21769 1.21739 1.21636 0.92971 0.91399 0.93973 0.92205 0.87568 0.92275 0.88502 0.87765 0.85577 0.85452 0.85151 0.85330 0.92012 0.90896 0.87631 0.96086 0.93754 0.94736 0.95409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 7.13 59.85 0.43 1.34 16 2 N -0.59 -9.35 2.82 -171.83 -0.48 -9.84 16 3 C 0.52 8.46 7.05 -10.99 -0.08 8.38 16 4 O -0.53 -10.59 15.94 -13.51 -0.22 -10.81 16 5 C 0.07 0.89 3.08 -26.98 -0.08 0.80 16 6 H 0.11 1.25 7.36 -51.93 -0.38 0.87 16 7 C -0.10 -1.08 5.50 -26.51 -0.15 -1.22 16 8 C -0.17 -1.98 6.27 -104.10 -0.65 -2.63 16 9 C -0.07 -0.63 10.03 -39.72 -0.40 -1.03 16 10 C -0.15 -1.25 10.07 -39.52 -0.40 -1.65 16 11 C -0.09 -0.73 10.01 -39.68 -0.40 -1.12 16 12 C -0.14 -1.47 10.06 -39.30 -0.40 -1.87 16 13 C 0.11 1.40 7.04 -38.95 -0.27 1.12 16 14 O -0.28 -4.19 10.39 -39.22 -0.41 -4.60 16 15 C 0.13 2.27 3.57 -66.10 -0.24 2.03 16 16 H 0.10 1.85 6.99 -51.93 -0.36 1.49 16 17 C -0.15 -2.85 6.60 -24.33 -0.16 -3.01 16 18 C 0.15 3.24 5.02 -2.28 -0.01 3.23 16 19 N -0.60 -14.40 2.93 -169.77 -0.50 -14.89 16 20 C -0.22 -5.88 10.27 -15.06 -0.15 -6.04 16 21 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -25.43 10.09 55.49 0.56 -24.87 16 24 Si 0.91 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 C 0.13 2.58 6.17 -3.06 -0.02 2.56 16 29 H 0.06 0.77 7.76 -51.93 -0.40 0.37 16 30 H 0.11 1.87 5.30 -51.93 -0.28 1.60 16 31 H 0.06 0.65 6.04 -51.93 -0.31 0.34 16 32 H 0.10 1.13 7.92 -51.93 -0.41 0.72 16 33 H 0.10 0.90 7.33 -51.93 -0.38 0.52 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.11 2.73 5.87 -51.92 -0.30 2.42 16 41 H 0.02 0.47 5.63 -51.93 -0.29 0.18 16 42 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.03 0.57 7.98 -51.93 -0.41 0.16 16 LS Contribution 347.40 15.07 5.24 5.24 Total: -1.00 -31.47 347.40 -9.95 -41.42 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.05 Total: 1.53 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -3.07 Total: 0.54 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.42 Total: -49.61 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.62 Total: -15.41 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.47 -9.95 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033249409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.256 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds