Wall clock time and date at job start Tue Mar 31 2020 11:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00206 * 2 1 4 4 C 1.53004 * 109.46998 * 66.04330 * 3 2 1 5 5 O 1.42899 * 109.47204 * 65.00145 * 4 3 2 6 6 C 1.46902 * 111.00107 * 236.04097 * 2 1 3 7 7 C 1.52996 * 109.47160 * 293.95939 * 6 2 1 8 8 H 1.08997 * 109.70504 * 46.19855 * 7 6 2 9 9 C 1.53195 * 109.58545 * 166.55337 * 7 6 2 10 10 C 1.53044 * 109.31463 * 174.42227 * 9 7 6 11 11 C 1.53040 * 109.53491 * 298.63344 * 10 9 7 12 12 C 1.53197 * 109.31195 * 61.36660 * 11 10 9 13 13 N 1.46923 * 108.77373 * 305.36142 * 12 11 10 14 14 C 1.34774 * 120.63000 * 233.61228 * 13 12 11 15 15 O 1.21287 * 120.00047 * 185.14389 * 14 13 12 16 16 C 1.50704 * 120.00078 * 5.14460 * 14 13 12 17 17 S 1.81007 * 109.47104 * 180.02562 * 16 14 13 18 18 C 1.76197 * 99.99762 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00465 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99797 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99993 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99982 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46618 * 90.00150 * 22 20 18 24 24 H 1.48502 * 109.47028 * 210.00140 * 22 20 18 25 25 H 1.48496 * 109.46791 * 330.00295 * 22 20 18 26 26 H 1.08997 * 109.47352 * 183.95195 * 1 2 3 27 27 H 1.09003 * 109.47269 * 303.95895 * 1 2 3 28 28 H 1.09004 * 109.46750 * 63.95300 * 1 2 3 29 29 H 1.08997 * 109.46907 * 186.04078 * 3 2 1 30 30 H 1.08994 * 109.46850 * 306.04680 * 3 2 1 31 31 H 1.09002 * 109.46817 * 184.99564 * 4 3 2 32 32 H 1.08998 * 109.47021 * 305.00000 * 4 3 2 33 33 H 0.96701 * 114.00249 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.47095 * 173.95519 * 6 2 1 35 35 H 1.09000 * 109.46599 * 53.95637 * 6 2 1 36 36 H 1.09007 * 109.49369 * 294.36945 * 9 7 6 37 37 H 1.08993 * 109.49884 * 54.46405 * 9 7 6 38 38 H 1.08996 * 109.45752 * 58.65145 * 10 9 7 39 39 H 1.08996 * 109.45799 * 178.61040 * 10 9 7 40 40 H 1.09003 * 109.49398 * 181.31501 * 11 10 9 41 41 H 1.08999 * 109.49553 * 301.38335 * 11 10 9 42 42 H 1.08998 * 109.58689 * 65.15056 * 12 11 10 43 43 H 1.09001 * 109.58021 * 185.58050 * 12 11 10 44 44 H 1.08994 * 109.46790 * 300.00003 * 16 14 13 45 45 H 1.08993 * 109.47044 * 60.00431 * 16 14 13 46 46 H 0.97006 * 119.99947 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 8 2.2955 1.3976 2.3979 6 6 1.9955 -0.7661 -1.1375 7 6 1.6314 -2.2426 -0.9702 8 1 0.5823 -2.3329 -0.6884 9 6 1.8746 -2.9841 -2.2886 10 6 1.6423 -4.4819 -2.0772 11 6 2.6311 -5.0112 -1.0359 12 6 2.3964 -4.2928 0.2966 13 7 2.4748 -2.8429 0.0723 14 6 3.3047 -2.0780 0.8090 15 8 3.2931 -0.8721 0.6795 16 6 4.2472 -2.7210 1.7936 17 16 5.2211 -1.4396 2.6217 18 6 6.2071 -2.4427 3.6829 19 1 6.0903 -3.5163 3.6733 20 6 7.1333 -1.8530 4.5320 21 7 7.8703 -2.6024 5.3244 22 14 7.3349 0.0040 4.5492 23 1 6.4115 0.5928 5.5520 24 1 8.7355 0.3466 4.9046 25 1 7.0181 0.5487 3.2045 26 1 -0.3634 -1.0252 0.0708 27 1 -0.3634 0.5741 0.8524 28 1 -0.3633 0.4513 -0.9233 29 1 3.0797 1.3443 -0.1081 30 1 1.5612 1.9273 -0.8309 31 1 1.9440 3.1011 1.2831 32 1 0.5532 2.0058 1.4690 33 1 2.1099 1.7801 3.2665 34 1 3.0798 -0.6612 -1.1755 35 1 1.5611 -0.3873 -2.0627 36 1 1.1856 -2.6126 -3.0473 37 1 2.9008 -2.8176 -2.6157 38 1 0.6233 -4.6454 -1.7265 39 1 1.7906 -5.0089 -3.0198 40 1 2.4806 -6.0826 -0.9031 41 1 3.6503 -4.8262 -1.3751 42 1 1.4098 -4.5502 0.6817 43 1 3.1607 -4.5935 1.0133 44 1 3.6738 -3.2772 2.5352 45 1 4.9153 -3.4014 1.2658 46 1 8.5173 -2.1903 5.9182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157573421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:12 Heat of formation + Delta-G solvation = -39.821719 kcal Electronic energy + Delta-G solvation = -26345.538246 eV Core-core repulsion = 22784.221245 eV Total energy + Delta-G solvation = -3561.317001 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.24938 -37.53007 -36.89288 -35.55165 -32.72077 -32.31317 -32.04924 -28.89350 -28.84399 -27.12525 -25.49649 -25.14353 -23.84031 -21.77992 -20.98220 -20.38071 -18.77063 -17.41901 -17.07844 -16.39887 -16.19459 -15.61916 -15.02699 -14.84139 -14.80785 -14.46260 -14.15977 -13.96675 -13.77740 -13.44537 -13.21140 -12.94665 -12.74515 -12.62963 -12.44444 -12.16197 -12.09820 -11.86072 -11.62872 -11.38306 -11.12670 -11.05307 -10.94153 -10.89058 -10.76686 -10.66145 -10.39052 -10.27170 -9.73467 -9.51288 -8.88317 -8.52879 -8.24780 -8.13423 -7.66407 -6.69689 -6.17598 -3.84489 2.95944 3.37304 3.40894 3.42551 3.60347 3.78909 4.11682 4.44124 4.60793 4.66207 4.74299 4.82536 4.94305 5.07434 5.13821 5.21828 5.23041 5.26621 5.37737 5.40928 5.43770 5.50780 5.57693 5.60727 5.63375 5.68372 5.72199 5.79674 5.86475 5.88351 5.92912 5.95681 6.01174 6.04340 6.13854 6.23340 6.30001 6.34792 6.92382 7.39993 7.49757 7.89435 8.05723 8.17118 8.53347 8.99170 9.29895 10.92044 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.005312 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.540998 B = 5270.256790 C = 7121.833450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.487 5.487 3 C 0.071 3.929 4 C 0.084 3.916 5 O -0.530 6.530 6 C 0.070 3.930 7 C 0.156 3.844 8 H 0.066 0.934 9 C -0.131 4.131 10 C -0.116 4.116 11 C -0.136 4.136 12 C 0.110 3.890 13 N -0.615 5.615 14 C 0.518 3.482 15 O -0.451 6.451 16 C -0.119 4.119 17 S -0.128 6.128 18 C -0.521 4.521 19 H 0.084 0.916 20 C 0.094 3.906 21 N -0.886 5.886 22 Si 0.859 3.141 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.235 1.235 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.011 0.989 29 H 0.089 0.911 30 H 0.027 0.973 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.363 0.637 34 H 0.096 0.904 35 H 0.017 0.983 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.626 1.366 -15.107 22.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.211 5.211 3 C -0.057 4.057 4 C 0.006 3.994 5 O -0.332 6.332 6 C -0.058 4.058 7 C 0.052 3.948 8 H 0.084 0.916 9 C -0.170 4.170 10 C -0.153 4.153 11 C -0.175 4.175 12 C -0.013 4.013 13 N -0.353 5.353 14 C 0.304 3.696 15 O -0.320 6.320 16 C -0.270 4.270 17 S 0.098 5.902 18 C -0.669 4.669 19 H 0.102 0.898 20 C -0.114 4.114 21 N -0.523 5.523 22 Si 0.684 3.316 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.159 1.159 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.030 0.970 29 H 0.107 0.893 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.207 0.793 34 H 0.114 0.886 35 H 0.034 0.966 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.086 2.589 -15.209 22.288 hybrid contribution -0.366 -0.196 0.146 0.440 sum -16.452 2.393 -15.063 22.434 Atomic orbital electron populations 1.22589 0.90290 1.01415 0.99340 1.62181 1.04141 1.12809 1.41978 1.21935 1.01882 0.87987 0.93850 1.22073 0.94777 0.93814 0.88778 1.86939 1.71681 1.58454 1.16133 1.22234 1.02323 0.91479 0.89775 1.21126 0.94294 0.92496 0.86879 0.91637 1.21965 1.02478 0.95591 0.96968 1.21468 0.99391 0.95443 0.99022 1.21937 1.00187 0.99691 0.95656 1.21638 1.02139 0.80393 0.97169 1.47910 1.43067 1.07124 1.37242 1.20087 0.80636 0.87552 0.81334 1.90823 1.64978 1.12533 1.63693 1.23320 1.00140 1.03470 1.00067 1.84810 1.45063 1.10848 1.49440 1.22442 1.23710 0.96040 1.24669 0.89797 1.24706 0.94148 0.98655 0.93875 1.69957 1.23105 1.35759 1.23499 0.86695 0.77875 0.85519 0.81468 1.19384 1.20385 1.15896 0.91998 0.91841 0.97029 0.89272 0.95529 0.94738 0.94963 0.79274 0.88609 0.96552 0.91370 0.91368 0.92026 0.91942 0.91026 0.91353 0.92073 0.89425 0.89626 0.89652 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.16 60.06 0.55 0.69 16 2 N -0.49 -7.13 2.56 -242.92 -0.62 -7.76 16 3 C 0.07 1.03 4.66 -3.82 -0.02 1.01 16 4 C 0.08 1.15 7.11 37.16 0.26 1.41 16 5 O -0.53 -9.10 13.49 -35.23 -0.48 -9.57 16 6 C 0.07 0.94 3.64 -3.82 -0.01 0.93 16 7 C 0.16 1.89 2.96 -67.60 -0.20 1.69 16 8 H 0.07 0.78 6.06 -51.93 -0.31 0.47 16 9 C -0.13 -1.27 5.33 -26.61 -0.14 -1.41 16 10 C -0.12 -0.99 5.88 -26.69 -0.16 -1.14 16 11 C -0.14 -1.30 6.08 -26.61 -0.16 -1.46 16 12 C 0.11 1.28 6.35 -3.71 -0.02 1.26 16 13 N -0.61 -8.72 2.97 -165.22 -0.49 -9.21 16 14 C 0.52 9.48 7.45 -10.98 -0.08 9.39 16 15 O -0.45 -9.02 8.57 5.55 0.05 -8.97 16 16 C -0.12 -2.44 4.51 36.01 0.16 -2.28 16 17 S -0.13 -3.31 18.55 -107.50 -1.99 -5.31 16 18 C -0.52 -15.40 10.04 30.94 0.31 -15.09 16 19 H 0.08 2.60 8.03 -52.49 -0.42 2.18 16 20 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 21 N -0.89 -27.36 13.97 55.49 0.78 -26.59 16 22 Si 0.86 22.37 27.74 -169.99 -4.72 17.66 16 23 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.24 -6.12 6.74 56.52 0.38 -5.74 16 26 H 0.06 0.73 6.23 -51.93 -0.32 0.40 16 27 H 0.06 0.76 6.21 -51.93 -0.32 0.44 16 28 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.09 1.52 7.22 -51.93 -0.37 1.15 16 30 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.39 6.26 -51.93 -0.33 0.07 16 33 H 0.36 4.72 9.12 45.56 0.42 5.14 16 34 H 0.10 1.55 6.08 -51.93 -0.32 1.23 16 35 H 0.02 0.20 8.06 -51.93 -0.42 -0.22 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.09 5.93 -51.93 -0.31 0.78 16 44 H 0.09 1.72 7.73 -51.92 -0.40 1.31 16 45 H 0.09 1.68 7.90 -51.92 -0.41 1.27 16 46 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -34.45 362.01 -8.53 -42.98 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.90 Total: 3.58 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 0.39 Total: -2.27 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.34 Total: -43.55 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.43 Total: -18.55 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.72 Total: 17.66 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -1.99 Total: -5.31 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.45 -8.53 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157573421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.158 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds