Wall clock time and date at job start Tue Mar 31 2020 11:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 116.99993 * 2 1 4 4 O 1.20824 * 120.00184 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99732 * 180.27639 * 3 2 1 6 6 C 1.50697 * 109.47269 * 179.72043 * 5 3 2 7 7 C 1.38260 * 119.99994 * 269.72450 * 6 5 3 8 8 C 1.38220 * 119.99863 * 179.80509 * 7 6 5 9 9 C 1.38254 * 119.99735 * 0.42599 * 8 7 6 10 10 C 1.38218 * 120.00085 * 359.80799 * 9 8 7 11 11 C 1.50707 * 119.99794 * 179.97438 * 10 9 8 12 12 N 1.46894 * 109.47105 * 270.02277 * 11 10 9 13 13 C 1.46902 * 111.00298 * 190.00298 * 12 11 10 14 14 C 1.50687 * 109.47601 * 170.08740 * 13 12 11 15 15 H 1.08004 * 120.00162 * 355.08933 * 14 13 12 16 16 C 1.37882 * 120.00227 * 175.09037 * 14 13 12 17 17 N 1.31506 * 119.99832 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00080 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47296 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47384 * 119.99831 * 18 16 14 21 21 H 1.48497 * 109.47242 * 239.99990 * 18 16 14 22 22 C 1.46901 * 111.00222 * 66.04398 * 12 11 10 23 23 C 1.52997 * 109.46677 * 63.38558 * 22 12 11 24 24 C 1.47207 * 109.46891 * 181.12693 * 23 22 12 25 25 N 9.80596 * 160.45768 * 185.03986 * 3 1 2 26 26 C 1.38210 * 119.99770 * 89.99790 * 6 5 3 27 27 H 1.08991 * 109.47388 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47055 * 300.00649 * 1 2 3 29 29 H 1.09001 * 109.47235 * 59.99826 * 1 2 3 30 30 H 1.08998 * 109.46966 * 299.72179 * 5 3 2 31 31 H 1.09008 * 109.47404 * 59.72093 * 5 3 2 32 32 H 1.07997 * 120.00063 * 359.97438 * 7 6 5 33 33 H 1.07992 * 119.99743 * 180.20692 * 8 7 6 34 34 H 1.08003 * 119.99652 * 179.78569 * 9 8 7 35 35 H 1.09006 * 109.46976 * 30.02087 * 11 10 9 36 36 H 1.09004 * 109.46690 * 150.02196 * 11 10 9 37 37 H 1.09005 * 109.46835 * 290.09320 * 13 12 11 38 38 H 1.08999 * 109.46947 * 50.08230 * 13 12 11 39 39 H 0.97004 * 120.00402 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.47035 * 183.38542 * 22 12 11 41 41 H 1.09001 * 109.47311 * 303.38603 * 22 12 11 42 42 H 1.08992 * 109.47474 * 301.12602 * 23 22 12 43 43 H 1.09003 * 109.47470 * 61.13212 * 23 22 12 44 44 H 1.07998 * 120.00544 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0063 6 6 3.9937 2.7199 -0.0119 7 6 4.1904 3.3779 -1.2118 8 6 4.5785 4.7045 -1.2170 9 6 4.7785 5.3708 -0.0222 10 6 4.5865 4.7115 1.1774 11 6 4.8050 5.4377 2.4797 12 7 6.2041 5.2809 2.8990 13 6 6.4005 5.7685 4.2707 14 6 7.7726 5.3739 4.7526 15 1 8.4026 4.7495 4.1363 16 6 8.2240 5.8099 5.9803 17 7 7.4572 6.5705 6.7305 18 14 9.9253 5.3213 6.5773 19 1 10.5829 4.4687 5.5545 20 1 10.7402 6.5419 6.8029 21 1 9.8051 4.5642 7.8491 22 6 7.1129 5.9582 1.9644 23 6 6.8345 7.4625 1.9824 24 6 7.7267 8.1380 1.0260 25 7 8.4150 8.6596 0.2882 26 6 4.1945 3.3857 1.1825 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.9596 0.7830 0.8834 31 1 3.9525 0.7782 -0.8966 32 1 4.0382 2.8562 -2.1451 33 1 4.7289 5.2195 -2.1542 34 1 5.0850 6.4064 -0.0262 35 1 4.5819 6.4965 2.3472 36 1 4.1480 5.0206 3.2429 37 1 6.3080 6.8545 4.2871 38 1 5.6460 5.3298 4.9237 39 1 7.7746 6.8769 7.5945 40 1 8.1447 5.7759 2.2646 41 1 6.9536 5.5712 0.9579 42 1 5.7971 7.6435 1.7016 43 1 7.0133 7.8532 2.9842 44 1 4.0447 2.8706 2.1198 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237487764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:01 Heat of formation + Delta-G solvation = -31.567244 kcal Electronic energy + Delta-G solvation = -25603.156740 eV Core-core repulsion = 21906.753729 eV Total energy + Delta-G solvation = -3696.403011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72291 -39.46151 -37.63129 -36.60452 -35.91853 -33.30062 -32.59800 -31.63358 -30.07956 -28.97087 -27.31383 -26.87816 -25.26880 -23.59473 -22.38350 -21.61793 -20.49903 -19.53579 -17.81363 -17.44431 -16.81501 -16.75001 -16.33786 -16.21924 -15.49680 -15.12999 -14.95439 -14.43525 -14.20784 -13.84726 -13.75558 -13.72131 -13.44264 -13.14818 -12.93552 -12.36992 -12.32515 -12.30368 -12.16882 -12.04155 -11.95455 -11.59969 -11.33197 -11.19066 -11.02837 -11.01038 -10.87746 -10.68438 -10.65088 -10.55551 -10.22771 -9.91760 -9.30388 -8.66802 -8.57219 -8.47634 -7.39360 -6.10378 -4.11840 1.35256 1.56621 2.05116 2.59791 3.08900 3.11669 3.27743 3.36443 3.40537 3.87875 4.33544 4.39648 4.46790 4.74077 4.79381 4.84693 4.92334 4.97091 5.10998 5.14679 5.21584 5.26218 5.26619 5.31938 5.42064 5.51135 5.60220 5.66219 5.79333 5.84826 6.01238 6.14133 6.21355 6.24794 6.29673 6.55773 6.59253 6.61826 6.82914 7.12040 7.14974 7.20678 7.57950 7.71281 7.85380 7.96749 8.04243 8.40907 8.96686 9.53572 10.99886 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012721 B = 0.003234 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.530567 B = 8655.007791 C =10178.048402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.363 6.363 3 C 0.459 3.541 4 O -0.496 6.496 5 C -0.070 4.070 6 C -0.085 4.085 7 C -0.110 4.110 8 C -0.121 4.121 9 C -0.110 4.110 10 C -0.060 4.060 11 C 0.081 3.919 12 N -0.521 5.521 13 C 0.185 3.815 14 C -0.508 4.508 15 H 0.065 0.935 16 C 0.058 3.942 17 N -0.897 5.897 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.070 3.930 23 C -0.076 4.076 24 C 0.224 3.776 25 N -0.461 5.461 26 C -0.079 4.079 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.005 0.995 38 H 0.031 0.969 39 H 0.261 0.739 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.024 -10.285 -13.596 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.280 6.280 3 C 0.302 3.698 4 O -0.382 6.382 5 C -0.107 4.107 6 C -0.086 4.086 7 C -0.128 4.128 8 C -0.139 4.139 9 C -0.129 4.129 10 C -0.061 4.061 11 C -0.046 4.046 12 N -0.243 5.243 13 C 0.061 3.939 14 C -0.547 4.547 15 H 0.083 0.917 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.061 4.061 23 C -0.118 4.118 24 C -0.093 4.093 25 N -0.139 5.139 26 C -0.098 4.098 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.023 0.977 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.141 0.859 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.132 -9.627 -14.492 20.654 hybrid contribution 0.193 0.557 0.813 1.005 sum -10.939 -9.070 -13.678 19.724 Atomic orbital electron populations 1.23247 0.76423 1.03555 1.02593 1.86506 1.23399 1.33709 1.84422 1.23814 0.92074 0.81301 0.72646 1.90706 1.67031 1.36235 1.44191 1.20299 0.87506 0.96217 1.06709 1.19143 1.01806 0.93610 0.93994 1.20841 1.00274 0.94931 0.96790 1.20993 1.00478 0.94563 0.97896 1.21104 0.99720 0.99887 0.92151 1.19878 0.97162 0.94088 0.94938 1.21154 0.92710 0.97401 0.93383 1.62422 1.01104 1.56160 1.04599 1.19893 0.97901 0.94175 0.81972 1.21161 1.00089 1.31020 1.02439 0.91673 1.24952 0.97564 0.95121 0.96735 1.69943 1.36678 1.35279 1.11705 0.86503 0.84231 0.78294 0.78804 1.19601 1.21155 1.21030 1.22103 1.00043 0.86863 0.97048 1.20273 0.95949 0.98687 0.96850 1.29283 0.93707 0.92866 0.93450 1.81132 1.10623 1.10475 1.11675 1.20855 0.97826 0.94024 0.97085 0.88189 0.91830 0.92004 0.86504 0.86918 0.86705 0.86374 0.86393 0.94139 0.90070 0.97700 0.95133 0.92905 0.89028 0.91479 0.88374 0.85857 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.50 10.57 -39.25 -0.41 -3.91 16 3 C 0.46 5.07 7.95 36.01 0.29 5.35 16 4 O -0.50 -7.09 15.78 -18.75 -0.30 -7.38 16 5 C -0.07 -0.64 5.94 -29.04 -0.17 -0.81 16 6 C -0.09 -1.01 4.37 -104.63 -0.46 -1.47 16 7 C -0.11 -1.26 9.70 -39.58 -0.38 -1.65 16 8 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 9 C -0.11 -1.42 7.91 -39.58 -0.31 -1.73 16 10 C -0.06 -0.85 4.89 -104.62 -0.51 -1.36 16 11 C 0.08 1.24 4.93 -4.98 -0.02 1.22 16 12 N -0.52 -9.46 4.69 -237.52 -1.11 -10.57 16 13 C 0.19 4.15 4.49 -4.98 -0.02 4.13 16 14 C -0.51 -12.91 8.40 -34.44 -0.29 -13.20 16 15 H 0.07 1.67 7.29 -52.48 -0.38 1.28 16 16 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -24.83 13.29 55.43 0.74 -24.09 16 18 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.07 1.15 4.75 -3.82 -0.02 1.13 16 23 C -0.08 -1.13 4.95 -29.52 -0.15 -1.27 16 24 C 0.22 3.61 15.43 -20.76 -0.32 3.29 16 25 N -0.46 -8.32 18.54 42.15 0.78 -7.54 16 26 C -0.08 -1.07 9.36 -39.58 -0.37 -1.44 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 29 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 30 H 0.12 0.89 8.09 -51.93 -0.42 0.47 16 31 H 0.11 0.74 8.08 -51.92 -0.42 0.33 16 32 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.12 1.40 7.31 -52.48 -0.38 1.02 16 35 H 0.04 0.57 6.03 -51.93 -0.31 0.26 16 36 H 0.08 1.26 7.88 -51.93 -0.41 0.85 16 37 H 0.01 0.12 6.04 -51.93 -0.31 -0.19 16 38 H 0.03 0.75 7.93 -51.93 -0.41 0.33 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.09 1.70 6.94 -51.93 -0.36 1.34 16 41 H 0.07 1.02 5.93 -51.93 -0.31 0.71 16 42 H 0.10 1.23 5.72 -51.93 -0.30 0.94 16 43 H 0.12 2.06 6.35 -51.93 -0.33 1.73 16 44 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -31.13 373.34 -7.89 -39.02 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.02 Total: 0.10 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -2.17 Total: -6.90 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.40 Total: -42.21 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.71 Total: -11.30 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.13 -7.89 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237487764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.456 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds