Wall clock time and date at job start Tue Mar 31 2020 11:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33824 * 126.08200 * 2 1 4 4 H 0.97001 * 124.98051 * 359.69507 * 3 2 1 5 5 N 1.39918 * 110.02831 * 179.73456 * 3 2 1 6 6 C 1.31926 * 109.06142 * 0.02562 * 5 3 2 7 7 C 1.41383 * 134.39368 * 180.02562 * 6 5 3 8 8 C 1.35189 * 119.92896 * 179.97438 * 7 6 5 9 9 C 1.41034 * 121.65850 * 0.05412 * 8 7 6 10 10 C 1.47509 * 119.39632 * 179.97438 * 9 8 7 11 11 O 1.21602 * 120.00349 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99773 * 359.97438 * 10 9 8 13 13 C 1.46507 * 119.99809 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46964 * 179.97438 * 13 12 10 15 15 H 1.09001 * 109.47230 * 305.00442 * 14 13 12 16 16 C 1.53002 * 109.47170 * 65.00024 * 14 13 12 17 17 C 1.52992 * 109.47238 * 184.99974 * 14 13 12 18 18 N 1.46504 * 109.47332 * 175.00247 * 17 14 13 19 19 C 1.36930 * 119.99906 * 180.02562 * 18 17 14 20 20 H 1.08003 * 120.00327 * 359.97438 * 19 18 17 21 21 C 1.38817 * 120.00155 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99710 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00431 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46859 * 59.99915 * 23 21 19 25 25 H 1.48500 * 109.47084 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47344 * 300.00156 * 23 21 19 27 27 C 1.38223 * 121.21396 * 359.94461 * 9 8 7 28 28 C 1.38541 * 126.08577 * 179.68450 * 2 1 3 29 29 H 1.09007 * 109.47244 * 90.02937 * 1 2 3 30 30 H 1.09000 * 109.47260 * 210.02776 * 1 2 3 31 31 H 1.08996 * 109.47432 * 330.02748 * 1 2 3 32 32 H 1.08002 * 120.03516 * 359.95675 * 7 6 5 33 33 H 1.08001 * 119.16607 * 180.02562 * 8 7 6 34 34 H 0.96997 * 120.00496 * 359.97438 * 12 10 9 35 35 H 1.08995 * 109.46905 * 299.99325 * 13 12 10 36 36 H 1.09000 * 109.47072 * 60.00104 * 13 12 10 37 37 H 1.08997 * 109.47495 * 180.02562 * 16 14 13 38 38 H 1.09006 * 109.47055 * 299.99786 * 16 14 13 39 39 H 1.08998 * 109.46844 * 59.99340 * 16 14 13 40 40 H 1.09007 * 109.47157 * 295.00136 * 17 14 13 41 41 H 1.09004 * 109.47331 * 54.99970 * 17 14 13 42 42 H 0.96993 * 119.99867 * 359.97438 * 18 17 14 43 43 H 0.97000 * 120.00256 * 179.97438 * 22 21 19 44 44 H 1.08000 * 120.32864 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2951 1.0815 0.0000 4 1 1.9803 1.9990 -0.0042 5 7 3.6397 0.6946 0.0061 6 6 3.7089 -0.6228 0.0094 7 6 4.7696 -1.5575 0.0161 8 6 4.5011 -2.8825 0.0185 9 6 3.1775 -3.3695 0.0133 10 6 2.9418 -4.8256 0.0156 11 8 1.8051 -5.2576 0.0117 12 7 3.9864 -5.6773 0.0221 13 6 3.7523 -7.1236 0.0239 14 6 5.0948 -7.8575 0.0309 15 1 5.6999 -7.5161 -0.8090 16 6 5.8292 -7.5647 1.3408 17 6 4.8536 -9.3632 -0.0930 18 7 6.1394 -10.0561 -0.2063 19 6 6.1739 -11.4195 -0.3292 20 1 5.2533 -11.9840 -0.3422 21 6 7.3922 -12.0760 -0.4371 22 7 8.5142 -11.3880 -0.4218 23 14 7.4394 -13.9359 -0.6041 24 1 6.7034 -14.3418 -1.8284 25 1 8.8504 -14.3884 -0.7023 26 1 6.8019 -14.5560 0.5852 27 6 2.0971 -2.5075 0.0067 28 6 2.3229 -1.1196 0.0062 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3634 0.8902 0.5134 32 1 5.7934 -1.2134 0.0190 33 1 5.3208 -3.5856 0.0240 34 1 4.8931 -5.3328 0.0249 35 1 3.1830 -7.3984 0.9118 36 1 3.1911 -7.4019 -0.8682 37 1 6.7858 -8.0872 1.3457 38 1 6.0012 -6.4919 1.4290 39 1 5.2241 -7.9060 2.1807 40 1 4.3250 -9.7204 0.7909 41 1 4.2535 -9.5632 -0.9807 42 1 6.9662 -9.5491 -0.1950 43 1 9.3655 -11.8467 -0.4968 44 1 1.0894 -2.8960 0.0032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753624280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:22 Heat of formation + Delta-G solvation = 54.952625 kcal Electronic energy + Delta-G solvation = -24783.012401 eV Core-core repulsion = 21122.653925 eV Total energy + Delta-G solvation = -3660.358477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -41.81427 -39.84281 -37.24972 -36.60210 -34.35702 -33.56112 -32.54080 -31.16226 -30.62875 -29.93651 -27.73709 -26.44850 -25.43098 -24.20946 -23.11292 -22.20282 -20.63647 -20.35976 -19.84549 -18.11812 -17.91997 -16.95707 -16.69193 -16.01927 -15.73717 -15.35150 -14.84350 -14.59128 -14.33959 -14.26170 -14.17218 -13.65812 -13.57218 -13.50239 -13.24087 -13.01837 -12.76651 -12.62398 -12.31584 -12.04101 -11.92490 -11.84087 -11.02838 -10.87101 -10.72212 -10.66069 -10.55021 -10.52614 -10.37943 -10.09336 -9.86845 -9.63336 -9.25981 -8.96197 -8.84251 -7.95337 -6.89184 -5.74116 -3.02315 0.11134 1.13510 1.91382 2.16311 2.85866 3.20925 3.46780 3.50918 3.52087 3.70262 3.82471 3.94679 4.31669 4.58059 4.61696 4.71851 4.81906 4.91223 5.01851 5.08874 5.15268 5.21116 5.26883 5.27743 5.43958 5.60736 5.74479 5.86707 5.97374 6.02692 6.04115 6.07966 6.11823 6.17154 6.29229 6.38547 6.44039 6.54864 6.57392 6.69557 6.81514 6.91136 7.13320 7.56210 7.72811 8.26078 8.45131 9.56231 10.13972 10.48817 11.48819 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.036464 B = 0.001959 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.704693 B =14292.748371 C =14897.134840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.133 3.867 3 N -0.424 5.424 4 H 0.443 0.557 5 N -0.309 5.309 6 C 0.123 3.877 7 C -0.111 4.111 8 C -0.050 4.050 9 C -0.177 4.177 10 C 0.560 3.440 11 O -0.548 6.548 12 N -0.721 5.721 13 C 0.127 3.873 14 C -0.111 4.111 15 H 0.077 0.923 16 C -0.142 4.142 17 C 0.160 3.840 18 N -0.731 5.731 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.039 3.961 28 C -0.220 4.220 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.399 0.601 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.556 28.254 1.706 31.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.007 4.007 3 N -0.124 5.124 4 H 0.287 0.713 5 N -0.136 5.136 6 C -0.032 4.032 7 C -0.132 4.132 8 C -0.073 4.073 9 C -0.182 4.182 10 C 0.348 3.652 11 O -0.427 6.427 12 N -0.373 5.373 13 C 0.004 3.996 14 C -0.130 4.130 15 H 0.095 0.905 16 C -0.199 4.199 17 C 0.032 3.968 18 N -0.375 5.375 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.017 3.983 28 C -0.229 4.229 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.235 0.765 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.668 28.862 1.694 32.420 hybrid contribution 0.325 -0.876 -0.112 0.941 sum -14.343 27.986 1.582 31.487 Atomic orbital electron populations 1.20647 0.85839 1.04979 1.04436 1.21411 0.94542 0.87179 0.97609 1.46307 1.04843 1.08748 1.52457 0.71257 1.77687 0.92550 1.12259 1.31081 1.21044 0.94158 0.90874 0.97123 1.19742 0.96981 0.90696 1.05754 1.20699 0.95584 0.95270 0.95712 1.19486 0.93688 0.92946 1.12029 1.18108 0.84854 0.85930 0.76273 1.90767 1.22192 1.79002 1.50748 1.45977 1.09159 1.07182 1.74941 1.21427 0.97705 0.78058 1.02458 1.21558 0.94955 0.97346 0.99155 0.90510 1.21796 1.01679 0.99834 0.96607 1.20578 0.90108 0.88076 0.98023 1.42330 1.02206 1.04322 1.88666 1.19197 0.92525 0.83259 1.41985 0.91210 1.24738 0.95356 0.97924 1.03071 1.69647 0.96708 1.34372 1.57625 0.86251 0.76430 0.85501 0.77908 1.21297 1.21727 1.21292 1.20650 0.99179 0.89230 0.89237 1.19241 0.92459 0.93632 1.17612 0.88990 0.88568 0.90222 0.84758 0.85118 0.76474 0.91248 0.91264 0.91162 0.93895 0.92790 0.95982 0.96110 0.78201 0.93507 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.26 10.44 36.00 0.38 0.11 16 2 C 0.13 0.88 7.28 -81.62 -0.59 0.28 16 3 N -0.42 -2.81 7.17 33.88 0.24 -2.56 16 4 H 0.44 1.22 8.96 -182.73 -1.64 -0.42 16 5 N -0.31 -3.23 12.69 33.30 0.42 -2.81 16 6 C 0.12 1.33 7.49 -82.98 -0.62 0.71 16 7 C -0.11 -1.07 10.05 -39.47 -0.40 -1.47 16 8 C -0.05 -0.47 9.39 -39.61 -0.37 -0.84 16 9 C -0.18 -1.98 5.86 -105.06 -0.62 -2.60 16 10 C 0.56 7.52 7.75 -12.48 -0.10 7.43 16 11 O -0.55 -9.12 16.26 5.28 0.09 -9.03 16 12 N -0.72 -8.78 5.23 -61.35 -0.32 -9.10 16 13 C 0.13 1.78 5.07 -4.04 -0.02 1.76 16 14 C -0.11 -1.71 2.46 -90.62 -0.22 -1.94 16 15 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.14 -2.10 8.94 37.16 0.33 -1.76 16 17 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 18 N -0.73 -18.35 5.33 -59.91 -0.32 -18.67 16 19 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 C 0.04 0.40 9.64 -38.69 -0.37 0.03 16 28 C -0.22 -2.13 6.25 -105.24 -0.66 -2.79 16 29 H 0.09 0.16 8.14 -51.92 -0.42 -0.27 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.13 0.94 6.27 -52.49 -0.33 0.61 16 34 H 0.40 3.96 5.58 -40.82 -0.23 3.73 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 38 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.14 1.33 7.58 -52.49 -0.40 0.94 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -36.02 369.46 -9.54 -45.56 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.39 Total: 6.31 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -3.53 Total: -5.31 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.75 Total: -60.63 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.02 -9.54 -45.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753624280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.517 kcal (2) G-P(sol) polarization free energy of solvation -36.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds