Wall clock time and date at job start Tue Mar 31 2020 11:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33818 * 126.07853 * 2 1 4 4 H 0.97000 * 124.98663 * 0.05744 * 3 2 1 5 5 N 1.39919 * 110.02780 * 180.02562 * 3 2 1 6 6 C 1.31934 * 109.06273 * 359.97438 * 5 3 2 7 7 C 1.41378 * 134.39637 * 180.02562 * 6 5 3 8 8 C 1.35191 * 119.93040 * 179.97438 * 7 6 5 9 9 C 1.41040 * 121.65512 * 359.97438 * 8 7 6 10 10 C 1.47514 * 119.39443 * 179.97438 * 9 8 7 11 11 O 1.21607 * 119.99868 * 179.97438 * 10 9 8 12 12 N 1.34773 * 120.00255 * 0.02562 * 10 9 8 13 13 C 1.46490 * 120.00384 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47559 * 179.97438 * 13 12 10 15 15 H 1.09008 * 109.46613 * 54.99525 * 14 13 12 16 16 C 1.53001 * 109.47108 * 295.00069 * 14 13 12 17 17 C 1.52996 * 109.47530 * 174.99686 * 14 13 12 18 18 N 1.46498 * 109.47059 * 184.99929 * 17 14 13 19 19 C 1.36943 * 119.99752 * 179.72430 * 18 17 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 17 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 17 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 C 1.38223 * 121.21263 * 0.28202 * 9 8 7 28 28 C 1.38538 * 126.08715 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47273 * 89.97644 * 1 2 3 30 30 H 1.08996 * 109.46920 * 209.97261 * 1 2 3 31 31 H 1.08998 * 109.47501 * 329.97693 * 1 2 3 32 32 H 1.07996 * 120.03547 * 359.95434 * 7 6 5 33 33 H 1.07996 * 119.17171 * 179.97438 * 8 7 6 34 34 H 0.97002 * 119.99300 * 359.97438 * 12 10 9 35 35 H 1.08998 * 109.47374 * 59.99359 * 13 12 10 36 36 H 1.09002 * 109.47263 * 299.99603 * 13 12 10 37 37 H 1.09001 * 109.46786 * 59.99727 * 16 14 13 38 38 H 1.09001 * 109.47309 * 179.97438 * 16 14 13 39 39 H 1.08995 * 109.46988 * 299.99895 * 16 14 13 40 40 H 1.09004 * 109.47066 * 65.00196 * 17 14 13 41 41 H 1.08994 * 109.46974 * 305.00344 * 17 14 13 42 42 H 0.97001 * 120.00384 * 0.02562 * 18 17 14 43 43 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 44 44 H 1.07999 * 120.33073 * 179.72255 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2950 1.0815 0.0000 4 1 1.9803 1.9990 0.0008 5 7 3.6397 0.6947 -0.0006 6 6 3.7090 -0.6229 -0.0004 7 6 4.7697 -1.5575 -0.0003 8 6 4.5013 -2.8825 0.0004 9 6 3.1776 -3.3695 0.0016 10 6 2.9420 -4.8257 0.0018 11 8 1.8052 -5.2577 0.0033 12 7 3.9864 -5.6774 0.0013 13 6 3.7524 -7.1235 0.0021 14 6 5.0949 -7.8575 0.0007 15 1 5.6975 -7.5142 0.8417 16 6 5.8333 -7.5677 -1.3077 17 6 4.8533 -9.3630 0.1272 18 7 6.1387 -10.0556 0.2460 19 6 6.1727 -11.4183 0.3772 20 1 5.2520 -11.9828 0.3887 21 6 7.3904 -12.0740 0.4955 22 7 8.5124 -11.3860 0.4820 23 14 7.4368 -13.9329 0.6738 24 1 6.0510 -14.4662 0.6598 25 1 8.2038 -14.5195 -0.4545 26 1 8.0926 -14.2909 1.9572 27 6 2.0972 -2.5075 -0.0037 28 6 2.3230 -1.1196 -0.0005 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 5.7934 -1.2134 -0.0011 33 1 5.3210 -3.5857 0.0001 34 1 4.8932 -5.3328 0.0005 35 1 3.1864 -7.4005 -0.8873 36 1 3.1879 -7.3998 0.8926 37 1 6.0054 -6.4951 -1.3977 38 1 6.7899 -8.0902 -1.3085 39 1 5.2307 -7.9108 -2.1486 40 1 4.3274 -9.7222 -0.7574 41 1 4.2506 -9.5610 1.0136 42 1 6.9656 -9.5486 0.2360 43 1 9.3634 -11.8442 0.5642 44 1 1.0895 -2.8960 -0.0072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753624281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:32 Heat of formation + Delta-G solvation = 54.754569 kcal Electronic energy + Delta-G solvation = -24783.046926 eV Core-core repulsion = 21122.679861 eV Total energy + Delta-G solvation = -3660.367065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -41.81459 -39.84362 -37.25115 -36.60352 -34.36048 -33.56081 -32.54395 -31.16335 -30.62933 -29.93943 -27.73757 -26.44998 -25.43473 -24.21153 -23.11505 -22.20780 -20.63732 -20.36051 -19.84763 -18.11855 -17.92120 -16.96059 -16.69306 -16.02111 -15.73911 -15.35088 -14.84710 -14.59191 -14.33989 -14.26009 -14.17490 -13.66109 -13.55559 -13.52824 -13.23979 -13.01132 -12.76644 -12.63062 -12.31755 -12.04661 -11.92790 -11.84084 -11.03166 -10.89504 -10.72314 -10.67297 -10.54884 -10.52408 -10.37513 -10.04739 -9.86180 -9.64429 -9.26014 -8.96296 -8.85612 -7.95399 -6.89369 -5.74832 -3.02944 0.11100 1.13425 1.91343 2.16290 2.85782 3.20830 3.45366 3.51300 3.53406 3.70181 3.82399 3.94623 4.31668 4.58008 4.61293 4.71771 4.81841 4.91159 5.01712 5.08823 5.15208 5.21000 5.26801 5.27658 5.43750 5.60438 5.74437 5.86565 5.97255 6.02487 6.04056 6.07837 6.11729 6.16901 6.29020 6.38475 6.43765 6.54798 6.57335 6.69343 6.81261 6.90917 7.13258 7.56067 7.73483 8.25985 8.44487 9.55757 10.13482 10.48212 11.48267 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.036432 B = 0.001959 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.372447 B =14291.972407 C =14895.658541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.133 3.867 3 N -0.424 5.424 4 H 0.443 0.557 5 N -0.309 5.309 6 C 0.123 3.877 7 C -0.111 4.111 8 C -0.050 4.050 9 C -0.177 4.177 10 C 0.560 3.440 11 O -0.548 6.548 12 N -0.721 5.721 13 C 0.127 3.873 14 C -0.111 4.111 15 H 0.077 0.923 16 C -0.142 4.142 17 C 0.160 3.840 18 N -0.731 5.731 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.039 3.961 28 C -0.220 4.220 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.399 0.601 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.021 0.979 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.623 28.266 -1.893 31.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.007 4.007 3 N -0.123 5.123 4 H 0.287 0.713 5 N -0.136 5.136 6 C -0.032 4.032 7 C -0.132 4.132 8 C -0.073 4.073 9 C -0.181 4.181 10 C 0.348 3.652 11 O -0.427 6.427 12 N -0.373 5.373 13 C 0.003 3.997 14 C -0.130 4.130 15 H 0.095 0.905 16 C -0.199 4.199 17 C 0.032 3.968 18 N -0.376 5.376 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.212 4.212 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.017 3.983 28 C -0.229 4.229 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.235 0.765 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.755 28.872 -1.882 32.478 hybrid contribution 0.351 -0.868 0.119 0.944 sum -14.403 28.004 -1.764 31.541 Atomic orbital electron populations 1.20648 0.85838 1.04987 1.04426 1.21409 0.94543 0.87177 0.97610 1.46305 1.04844 1.08747 1.52453 0.71257 1.77690 0.92546 1.12259 1.31087 1.21045 0.94157 0.90875 0.97122 1.19740 0.96982 0.90695 1.05753 1.20701 0.95584 0.95271 0.95713 1.19488 0.93688 0.92943 1.12030 1.18110 0.84855 0.85931 0.76274 1.90768 1.22188 1.79007 1.50748 1.45971 1.09160 1.07178 1.74941 1.21424 0.97703 0.78062 1.02461 1.21561 0.94946 0.97348 0.99165 0.90510 1.21795 1.01661 0.99844 0.96617 1.20577 0.90103 0.88081 0.98024 1.42352 1.02238 1.04422 1.88542 1.19293 0.92605 0.83309 1.41611 0.91090 1.24740 0.95367 0.97945 1.03103 1.69669 0.96717 1.34187 1.57747 0.86107 0.77280 0.85541 0.77220 1.20551 1.21915 1.21914 1.20650 0.99179 0.89230 0.89236 1.19240 0.92458 0.93632 1.17614 0.88993 0.88566 0.90223 0.84758 0.85118 0.76473 0.91256 0.91259 0.93893 0.91162 0.92787 0.95968 0.96103 0.78204 0.93610 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.26 10.44 36.00 0.38 0.11 16 2 C 0.13 0.88 7.28 -81.62 -0.59 0.28 16 3 N -0.42 -2.80 7.17 33.88 0.24 -2.56 16 4 H 0.44 1.22 8.96 -182.73 -1.64 -0.42 16 5 N -0.31 -3.23 12.69 33.30 0.42 -2.81 16 6 C 0.12 1.33 7.49 -82.98 -0.62 0.71 16 7 C -0.11 -1.07 10.05 -39.47 -0.40 -1.47 16 8 C -0.05 -0.47 9.39 -39.61 -0.37 -0.84 16 9 C -0.18 -1.98 5.86 -105.06 -0.62 -2.60 16 10 C 0.56 7.52 7.75 -12.48 -0.10 7.42 16 11 O -0.55 -9.11 16.26 5.27 0.09 -9.03 16 12 N -0.72 -8.77 5.23 -61.36 -0.32 -9.09 16 13 C 0.13 1.77 5.06 -4.05 -0.02 1.75 16 14 C -0.11 -1.71 2.46 -90.62 -0.22 -1.94 16 15 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 16 C -0.14 -2.09 8.94 37.16 0.33 -1.76 16 17 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 18 N -0.73 -18.34 5.33 -59.91 -0.32 -18.66 16 19 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 C 0.04 0.40 9.64 -38.69 -0.37 0.03 16 28 C -0.22 -2.13 6.25 -105.24 -0.66 -2.79 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.13 0.94 6.27 -52.49 -0.33 0.61 16 34 H 0.40 3.95 5.58 -40.82 -0.23 3.73 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 38 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.38 10.00 6.85 -40.82 -0.28 9.72 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.14 1.33 7.58 -52.49 -0.40 0.94 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -36.07 369.46 -9.54 -45.61 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.39 Total: 6.21 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -3.53 Total: -5.29 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.75 Total: -60.61 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.07 -9.54 -45.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753624281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.367 kcal (2) G-P(sol) polarization free energy of solvation -36.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds