Wall clock time and date at job start Tue Mar 31 2020 11:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39059 * 119.35511 * 2 1 4 4 C 1.35707 * 122.67670 * 179.97438 * 3 2 1 5 5 C 1.41016 * 120.59008 * 359.97438 * 4 3 2 6 6 N 1.32148 * 134.70312 * 180.02562 * 5 4 3 7 7 N 1.39979 * 108.88892 * 180.02562 * 6 5 4 8 8 H 0.97000 * 125.06325 * 180.02562 * 7 6 5 9 9 C 1.34244 * 109.87689 * 359.97438 * 7 6 5 10 10 C 1.37580 * 107.92620 * 0.02683 * 9 7 6 11 11 C 1.38451 * 119.35830 * 179.97438 * 2 1 3 12 12 C 1.47298 * 120.74508 * 359.74775 * 11 2 1 13 13 O 1.21626 * 120.00200 * 89.99610 * 12 11 2 14 14 N 1.34780 * 119.99803 * 270.00590 * 12 11 2 15 15 C 1.46504 * 120.00069 * 179.97438 * 14 12 11 16 16 H 1.09009 * 109.46980 * 34.99463 * 15 14 12 17 17 C 1.52999 * 109.46969 * 275.00034 * 15 14 12 18 18 C 1.52995 * 109.47205 * 154.99652 * 15 14 12 19 19 N 1.46507 * 109.47141 * 304.99831 * 18 15 14 20 20 C 1.46496 * 120.00251 * 270.00056 * 19 18 15 21 21 C 1.36937 * 119.99396 * 90.00502 * 19 18 15 22 22 H 1.08001 * 120.00410 * 19.06842 * 21 19 18 23 23 C 1.38820 * 119.99389 * 199.06967 * 21 19 18 24 24 N 1.31619 * 119.99868 * 14.98580 * 23 21 19 25 25 Si 1.86794 * 119.99743 * 194.98437 * 23 21 19 26 26 H 1.48500 * 109.47338 * 84.93918 * 25 23 21 27 27 H 1.48502 * 109.47144 * 204.94155 * 25 23 21 28 28 H 1.48507 * 109.47306 * 324.94223 * 25 23 21 29 29 H 1.09000 * 109.47536 * 270.02104 * 1 2 3 30 30 H 1.09000 * 109.47311 * 30.01957 * 1 2 3 31 31 H 1.08995 * 109.47334 * 150.02261 * 1 2 3 32 32 H 1.08005 * 118.66373 * 0.02562 * 3 2 1 33 33 H 1.07997 * 119.70526 * 180.02562 * 4 3 2 34 34 H 1.07996 * 126.04121 * 179.97438 * 9 7 6 35 35 H 0.96996 * 120.00453 * 359.97438 * 14 12 11 36 36 H 1.08996 * 109.47193 * 59.99627 * 17 15 14 37 37 H 1.09003 * 109.47052 * 179.97438 * 17 15 14 38 38 H 1.08995 * 109.46729 * 299.99508 * 17 15 14 39 39 H 1.08994 * 109.47423 * 64.99968 * 18 15 14 40 40 H 1.09003 * 109.47236 * 185.00078 * 18 15 14 41 41 H 1.08996 * 109.47119 * 95.13975 * 20 19 18 42 42 H 1.08998 * 109.47477 * 215.14139 * 20 19 18 43 43 H 1.09004 * 109.47116 * 335.14039 * 20 19 18 44 44 H 0.97002 * 119.99493 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2120 0.0000 4 6 3.5434 1.2907 0.0005 5 6 4.3302 0.1204 0.0016 6 7 5.6283 -0.1270 0.0027 7 7 5.8255 -1.5129 0.0029 8 1 6.6900 -1.9527 0.0040 9 6 4.6399 -2.1426 0.0024 10 6 3.6519 -1.1852 0.0013 11 6 2.1857 -1.2067 0.0005 12 6 1.4516 -2.4837 0.0067 13 8 1.1443 -3.0136 -1.0441 14 7 1.1201 -3.0647 1.1767 15 6 0.3893 -4.3345 1.1829 16 1 0.7157 -4.9456 0.3413 17 6 -1.1110 -4.0601 1.0624 18 6 0.6686 -5.0773 2.4910 19 7 2.1149 -5.2347 2.6640 20 6 2.7915 -6.4202 2.1321 21 6 2.8341 -4.2738 3.3232 22 1 2.3307 -3.5728 3.9725 23 6 4.2103 -4.2007 3.1566 24 7 4.7878 -4.8410 2.1622 25 14 5.2425 -3.1937 4.3439 26 1 5.5721 -4.0173 5.5348 27 1 6.4974 -2.7700 3.6724 28 1 4.4786 -1.9931 4.7686 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5134 32 1 1.6166 2.1282 0.0004 33 1 4.0234 2.2581 0.0009 34 1 4.4883 -3.2119 0.0020 35 1 1.3652 -2.6423 2.0147 36 1 -1.3099 -3.5309 0.1305 37 1 -1.6546 -5.0049 1.0666 38 1 -1.4372 -3.4491 1.9040 39 1 0.2627 -4.5070 3.3265 40 1 0.1975 -6.0597 2.4587 41 1 3.1988 -6.1945 1.1466 42 1 3.6012 -6.7080 2.8026 43 1 2.0779 -7.2402 2.0512 44 1 5.7494 -4.7896 2.0457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754313669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:32 Heat of formation + Delta-G solvation = 59.748199 kcal Electronic energy + Delta-G solvation = -27894.091566 eV Core-core repulsion = 24233.941041 eV Total energy + Delta-G solvation = -3660.150525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.20689 -40.66217 -38.39662 -37.75923 -35.65620 -33.80418 -33.03683 -32.15972 -31.32015 -30.81870 -27.99188 -27.71163 -27.32342 -25.21975 -23.89347 -23.04644 -22.01372 -21.42828 -20.75384 -19.20222 -18.75907 -18.24837 -17.23389 -16.94087 -16.65116 -16.28823 -15.98412 -15.84684 -15.63686 -15.13221 -15.03333 -14.46784 -14.45687 -14.27859 -14.03943 -13.81730 -13.32863 -13.10988 -13.06882 -12.86844 -12.81723 -12.70361 -12.59560 -12.51393 -12.31653 -12.11571 -11.98182 -11.91920 -11.79806 -11.64738 -11.13864 -10.68221 -10.54717 -9.81863 -9.71053 -8.74113 -8.59900 -7.74862 -5.16022 -0.50980 0.83449 1.29743 1.39884 1.45267 1.46632 1.63074 1.80404 2.45960 2.51600 2.75908 3.26447 3.39003 3.69510 3.77880 3.97207 4.00857 4.19188 4.23372 4.38965 4.47927 4.52427 4.60256 4.63128 4.79655 4.81015 4.87070 4.90256 4.95747 4.96836 5.06324 5.21305 5.24764 5.39007 5.41274 5.43100 5.47179 5.58917 5.69842 5.77867 5.79918 5.86221 6.13208 6.37004 6.52807 6.75006 7.22201 7.39123 7.93873 8.38332 9.27359 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.007755 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.389074 B = 3609.678283 C = 5396.436801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.083 4.083 3 C -0.065 4.065 4 C -0.097 4.097 5 C 0.085 3.915 6 N -0.328 5.328 7 N -0.423 5.423 8 H 0.452 0.548 9 C 0.111 3.889 10 C -0.208 4.208 11 C -0.074 4.074 12 C 0.571 3.429 13 O -0.592 6.592 14 N -0.673 5.673 15 C 0.119 3.881 16 H 0.043 0.957 17 C -0.147 4.147 18 C 0.142 3.858 19 N -0.608 5.608 20 C 0.179 3.821 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.023 4.023 24 N -0.916 5.916 25 Si 0.928 3.072 26 H -0.295 1.295 27 H -0.305 1.305 28 H -0.280 1.280 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.176 0.824 33 H 0.156 0.844 34 H 0.177 0.823 35 H 0.404 0.596 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.075 0.925 41 H -0.002 1.002 42 H 0.020 0.980 43 H 0.025 0.975 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.481 8.714 -1.888 12.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.088 4.088 4 C -0.117 4.117 5 C -0.069 4.069 6 N -0.156 5.156 7 N -0.125 5.125 8 H 0.298 0.702 9 C -0.046 4.046 10 C -0.218 4.218 11 C -0.079 4.079 12 C 0.358 3.642 13 O -0.475 6.475 14 N -0.321 5.321 15 C 0.012 3.988 16 H 0.062 0.938 17 C -0.206 4.206 18 C 0.015 3.985 19 N -0.331 5.331 20 C 0.034 3.966 21 C -0.369 4.369 22 H 0.089 0.911 23 C -0.219 4.219 24 N -0.563 5.563 25 Si 0.760 3.240 26 H -0.223 1.223 27 H -0.233 1.233 28 H -0.205 1.205 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.193 0.807 33 H 0.173 0.827 34 H 0.194 0.806 35 H 0.240 0.760 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.016 0.984 42 H 0.039 0.961 43 H 0.043 0.957 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.316 8.811 -2.604 11.744 hybrid contribution 1.379 -0.593 0.825 1.712 sum -5.937 8.218 -1.779 10.293 Atomic orbital electron populations 1.20863 0.88864 1.03497 1.03476 1.19998 0.97316 0.90955 1.00292 1.20768 0.93289 0.97944 0.96760 1.20258 0.93059 0.95178 1.03253 1.21377 0.90472 0.95272 0.99784 1.77473 1.16017 0.90791 1.31355 1.46223 1.08560 1.04866 1.52819 0.70184 1.22667 0.85541 0.99069 0.97293 1.20339 0.92884 0.92748 1.15835 1.20177 0.90166 0.93629 1.03967 1.18200 0.77747 0.84358 0.83914 1.90718 1.57712 1.65965 1.33065 1.45822 1.55499 1.23006 1.07749 1.21795 0.91736 0.84751 1.00508 0.93831 1.22031 0.93970 1.02873 1.01702 1.21376 0.84215 0.98900 0.94033 1.44088 1.03260 1.20512 1.65192 1.20513 0.93604 0.86169 0.96343 1.19288 0.89748 1.09720 1.18174 0.91087 1.25114 0.98138 1.00495 0.98192 1.70213 1.08723 1.47458 1.29931 0.85891 0.79027 0.79164 0.79922 1.22253 1.23254 1.20510 0.89507 0.88111 0.93534 0.80667 0.82658 0.80570 0.75993 0.93965 0.90048 0.90960 0.91604 0.90679 0.98382 0.96094 0.95693 0.94799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 9.58 71.23 0.68 -1.78 16 2 C -0.08 -2.39 5.91 -19.62 -0.12 -2.51 16 3 C -0.07 -1.53 9.45 21.88 0.21 -1.32 16 4 C -0.10 -2.65 10.02 22.36 0.22 -2.42 16 5 C 0.09 3.09 7.49 42.11 0.32 3.41 16 6 N -0.33 -12.20 12.71 -48.75 -0.62 -12.82 16 7 N -0.42 -15.22 7.20 -56.62 -0.41 -15.63 16 8 H 0.45 13.46 8.96 -213.40 -1.91 11.55 16 9 C 0.11 4.51 12.00 84.17 1.01 5.52 16 10 C -0.21 -8.29 6.35 -18.91 -0.12 -8.41 16 11 C -0.07 -2.75 5.80 -18.65 -0.11 -2.86 16 12 C 0.57 23.03 5.65 86.63 0.49 23.52 16 13 O -0.59 -27.65 16.75 -4.11 -0.07 -27.72 16 14 N -0.67 -25.00 4.48 -445.90 -2.00 -27.00 16 15 C 0.12 4.12 2.88 44.99 0.13 4.25 16 16 H 0.04 1.81 7.58 -2.38 -0.02 1.79 16 17 C -0.15 -3.87 9.48 71.98 0.68 -3.18 16 18 C 0.14 4.84 5.36 86.38 0.46 5.31 16 19 N -0.61 -26.62 2.82 -726.94 -2.05 -28.67 16 20 C 0.18 8.17 9.02 127.77 1.15 9.32 16 21 C -0.24 -11.38 8.04 84.04 0.68 -10.70 16 22 H 0.07 3.29 7.86 -2.91 -0.02 3.27 16 23 C -0.02 -1.16 5.07 84.86 0.43 -0.73 16 24 N -0.92 -47.39 10.47 21.65 0.23 -47.16 16 25 Si 0.93 42.83 29.58 68.60 2.03 44.86 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 27 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 28 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.10 1.58 8.07 -2.39 -0.02 1.56 16 31 H 0.05 1.26 7.02 -2.39 -0.02 1.24 16 32 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.18 7.93 7.94 -2.91 -0.02 7.90 16 35 H 0.40 15.16 7.38 -92.71 -0.68 14.47 16 36 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 2.07 8.03 -2.39 -0.02 2.05 16 40 H 0.08 2.26 7.86 -2.39 -0.02 2.25 16 41 H 0.00 -0.11 7.43 -2.39 -0.02 -0.13 16 42 H 0.02 1.03 7.13 -2.39 -0.02 1.01 16 43 H 0.02 0.97 7.84 -2.39 -0.02 0.95 16 44 H 0.24 12.47 8.31 -92.71 -0.77 11.69 16 Total: -1.00 -65.88 367.52 1.66 -64.22 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: -1.56 Total: 32.52 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 6.12 Total: 17.40 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -4.85 Total: -131.28 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.07 Total: -27.72 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -65.88 1.66 -64.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.966 kcal (2) G-P(sol) polarization free energy of solvation -65.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds