Wall clock time and date at job start Tue Mar 31 2020 11:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39064 * 119.35827 * 2 1 4 4 C 1.35707 * 122.67641 * 179.69428 * 3 2 1 5 5 C 1.41014 * 120.58872 * 0.57863 * 4 3 2 6 6 N 1.32150 * 134.70012 * 179.69441 * 5 4 3 7 7 N 1.39978 * 108.88858 * 180.02562 * 6 5 4 8 8 H 0.97004 * 125.06154 * 179.97438 * 7 6 5 9 9 C 1.34242 * 109.87312 * 0.02562 * 7 6 5 10 10 C 1.37564 * 107.93265 * 359.97438 * 9 7 6 11 11 C 1.38466 * 119.35952 * 180.27109 * 2 1 3 12 12 C 1.47294 * 120.73550 * 0.02562 * 11 2 1 13 13 O 1.21627 * 120.00576 * 90.00126 * 12 11 2 14 14 N 1.34780 * 119.99671 * 269.99652 * 12 11 2 15 15 C 1.46501 * 119.99782 * 180.02562 * 14 12 11 16 16 H 1.09007 * 109.47201 * 324.99806 * 15 14 12 17 17 C 1.52994 * 109.47307 * 85.00212 * 15 14 12 18 18 C 1.52999 * 109.46972 * 205.00298 * 15 14 12 19 19 N 1.46501 * 109.47412 * 54.99870 * 18 15 14 20 20 C 1.46500 * 119.99635 * 270.00096 * 19 18 15 21 21 C 1.36929 * 119.99868 * 90.00236 * 19 18 15 22 22 H 1.08001 * 120.00340 * 21.45462 * 21 19 18 23 23 C 1.38820 * 119.99794 * 201.45760 * 21 19 18 24 24 N 1.31612 * 119.99908 * 11.57772 * 23 21 19 25 25 Si 1.86796 * 119.99994 * 191.58088 * 23 21 19 26 26 H 1.48507 * 109.47426 * 89.99558 * 25 23 21 27 27 H 1.48500 * 109.47271 * 209.99681 * 25 23 21 28 28 H 1.48501 * 109.47422 * 329.99993 * 25 23 21 29 29 H 1.09001 * 109.47066 * 269.73064 * 1 2 3 30 30 H 1.08996 * 109.46997 * 149.73049 * 1 2 3 31 31 H 1.08998 * 109.47045 * 29.73239 * 1 2 3 32 32 H 1.08001 * 118.65665 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.70032 * 180.29466 * 4 3 2 34 34 H 1.08000 * 126.03152 * 180.02562 * 9 7 6 35 35 H 0.96998 * 120.00045 * 0.02562 * 14 12 11 36 36 H 1.08998 * 109.47366 * 299.99806 * 17 15 14 37 37 H 1.08997 * 109.47381 * 60.00208 * 17 15 14 38 38 H 1.09004 * 109.47137 * 180.02562 * 17 15 14 39 39 H 1.09000 * 109.47106 * 174.99936 * 18 15 14 40 40 H 1.09001 * 109.46983 * 294.99442 * 18 15 14 41 41 H 1.09000 * 109.47055 * 94.97358 * 20 19 18 42 42 H 1.09004 * 109.46768 * 214.96966 * 20 19 18 43 43 H 1.08995 * 109.47537 * 334.96834 * 20 19 18 44 44 H 0.96998 * 120.00297 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2120 0.0000 4 6 3.5435 1.2906 0.0061 5 6 4.3302 0.1203 0.0006 6 7 5.6283 -0.1271 -0.0010 7 7 5.8255 -1.5129 -0.0079 8 1 6.6901 -1.9528 -0.0107 9 6 4.6399 -2.1425 -0.0113 10 6 3.6519 -1.1853 -0.0060 11 6 2.1858 -1.2068 -0.0057 12 6 1.4515 -2.4836 -0.0123 13 8 1.1486 -3.0057 -1.0683 14 7 1.1151 -3.0735 1.1519 15 6 0.3852 -4.3437 1.1454 16 1 -0.3065 -4.3610 0.3031 17 6 1.3771 -5.5013 1.0146 18 6 -0.3982 -4.4885 2.4516 19 7 -1.2618 -3.3194 2.6353 20 6 -0.7608 -2.1440 3.3520 21 6 -2.5372 -3.3254 2.1371 22 1 -3.0303 -4.2629 1.9263 23 6 -3.1965 -2.1264 1.9028 24 7 -2.5310 -0.9915 1.9390 25 14 -5.0281 -2.1238 1.5362 26 1 -5.7872 -2.0063 2.8072 27 1 -5.3552 -0.9732 0.6562 28 1 -5.3983 -3.3898 0.8540 29 1 -0.3633 -0.0048 1.0277 30 1 -0.3633 -0.8875 -0.5180 31 1 -0.3633 0.8924 -0.5097 32 1 1.6166 2.1281 -0.0004 33 1 4.0234 2.2581 0.0106 34 1 4.4884 -3.2119 -0.0162 35 1 1.3563 -2.6571 1.9941 36 1 1.9352 -5.3982 0.0840 37 1 2.0687 -5.4841 1.8569 38 1 0.8339 -6.4463 1.0093 39 1 -1.0103 -5.3894 2.4102 40 1 0.2984 -4.5605 3.2869 41 1 -0.3721 -1.4201 2.6357 42 1 -1.5731 -1.6919 3.9211 43 1 0.0356 -2.4455 4.0324 44 1 -2.9916 -0.1537 1.7756 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754313670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:38 Heat of formation + Delta-G solvation = 60.860012 kcal Electronic energy + Delta-G solvation = -27429.823172 eV Core-core repulsion = 23769.720859 eV Total energy + Delta-G solvation = -3660.102313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.164 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -42.23386 -40.70786 -38.37860 -37.79401 -35.67222 -33.81229 -32.93987 -32.20262 -31.42032 -30.84419 -27.99651 -27.63823 -27.29446 -25.20532 -23.93417 -22.93869 -22.01816 -21.56958 -20.74352 -19.19238 -18.70243 -18.43554 -17.21191 -16.93655 -16.58084 -16.26692 -16.12543 -15.85022 -15.51963 -15.21864 -14.93612 -14.67019 -14.55299 -14.08130 -14.02956 -13.68273 -13.37103 -13.11682 -13.01443 -12.82313 -12.72519 -12.62503 -12.53204 -12.48807 -12.26260 -12.23097 -11.96544 -11.85407 -11.72652 -11.62926 -11.14811 -10.71804 -10.52451 -9.89946 -9.70540 -8.63490 -8.59723 -7.69883 -5.13663 -0.53946 0.79436 1.27513 1.48417 1.51302 1.56498 1.65110 1.79350 2.41261 2.58148 2.72259 3.21501 3.42545 3.66113 3.78850 3.93196 3.99875 4.15023 4.24704 4.35402 4.45812 4.46639 4.57561 4.61576 4.79303 4.81448 4.89667 4.95330 4.96628 5.00807 5.06278 5.23502 5.29852 5.38699 5.41668 5.45798 5.50255 5.64821 5.74094 5.75713 5.79692 5.95523 6.22656 6.44480 6.52099 6.67532 7.29587 7.34991 7.99527 8.40877 9.31195 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.004717 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.467382 B = 5934.203115 C = 7018.694911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.073 4.073 3 C -0.075 4.075 4 C -0.087 4.087 5 C 0.085 3.915 6 N -0.320 5.320 7 N -0.409 5.409 8 H 0.462 0.538 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.078 4.078 12 C 0.573 3.427 13 O -0.589 6.589 14 N -0.680 5.680 15 C 0.120 3.880 16 H 0.038 0.962 17 C -0.146 4.146 18 C 0.143 3.857 19 N -0.609 5.609 20 C 0.174 3.826 21 C -0.263 4.263 22 H 0.061 0.939 23 C -0.036 4.036 24 N -0.910 5.910 25 Si 0.950 3.050 26 H -0.289 1.289 27 H -0.299 1.299 28 H -0.281 1.281 29 H 0.086 0.914 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.213 0.787 35 H 0.402 0.598 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.020 0.980 42 H 0.014 0.986 43 H 0.025 0.975 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.638 -1.109 0.374 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.075 4.075 3 C -0.097 4.097 4 C -0.107 4.107 5 C -0.069 4.069 6 N -0.149 5.149 7 N -0.114 5.114 8 H 0.310 0.690 9 C -0.060 4.060 10 C -0.214 4.214 11 C -0.084 4.084 12 C 0.360 3.640 13 O -0.471 6.471 14 N -0.328 5.328 15 C 0.013 3.987 16 H 0.056 0.944 17 C -0.205 4.205 18 C 0.016 3.984 19 N -0.332 5.332 20 C 0.030 3.970 21 C -0.394 4.394 22 H 0.079 0.921 23 C -0.233 4.233 24 N -0.555 5.555 25 Si 0.781 3.219 26 H -0.216 1.216 27 H -0.226 1.226 28 H -0.207 1.207 29 H 0.105 0.895 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.229 0.771 35 H 0.237 0.763 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.032 0.968 43 H 0.044 0.956 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.568 -0.808 -0.334 17.590 hybrid contribution -1.861 -0.256 -0.195 1.889 sum 15.707 -1.065 -0.529 15.752 Atomic orbital electron populations 1.20683 0.90197 1.00986 1.03775 1.19933 0.96016 0.92223 0.99340 1.20626 0.93988 0.97309 0.97784 1.20163 0.92197 0.96105 1.02252 1.21127 0.90669 0.94988 1.00105 1.77567 1.15101 0.91648 1.30560 1.46240 1.08865 1.04439 1.51809 0.68951 1.22798 0.84649 0.99575 0.98975 1.20317 0.91805 0.93614 1.15694 1.19990 0.90935 0.92490 1.04965 1.18244 0.78040 0.83867 0.83879 1.90739 1.57307 1.66367 1.32658 1.45824 1.55557 1.23733 1.07720 1.21750 0.93230 0.82923 1.00806 0.94366 1.22025 0.99180 0.97396 1.01884 1.21343 0.92604 0.90578 0.93885 1.44028 1.11192 1.14749 1.63208 1.20670 0.94974 0.88310 0.93080 1.19348 0.90679 0.92037 1.37336 0.92138 1.25437 1.00711 0.96089 1.01039 1.70109 1.34144 0.96806 1.54476 0.85543 0.82859 0.76475 0.77068 1.21649 1.22632 1.20680 0.89541 0.95515 0.90854 0.82633 0.82620 0.77078 0.76260 0.93776 0.90395 0.90559 0.91935 0.90891 0.96172 0.96758 0.95613 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.93 9.58 71.23 0.68 -3.25 16 2 C -0.07 -2.51 5.91 -19.61 -0.12 -2.62 16 3 C -0.07 -2.03 9.45 21.88 0.21 -1.82 16 4 C -0.09 -2.20 10.02 22.36 0.22 -1.97 16 5 C 0.08 2.41 7.49 42.11 0.32 2.72 16 6 N -0.32 -8.22 12.71 -48.75 -0.62 -8.84 16 7 N -0.41 -7.49 7.20 -56.63 -0.41 -7.89 16 8 H 0.46 4.25 8.96 -213.39 -1.91 2.34 16 9 C 0.10 2.07 12.00 84.17 1.01 3.08 16 10 C -0.20 -6.02 6.35 -18.91 -0.12 -6.14 16 11 C -0.08 -2.75 5.80 -18.65 -0.11 -2.86 16 12 C 0.57 22.46 5.64 86.62 0.49 22.95 16 13 O -0.59 -27.67 16.75 -4.12 -0.07 -27.74 16 14 N -0.68 -24.12 4.42 -445.91 -1.97 -26.09 16 15 C 0.12 4.27 2.88 44.99 0.13 4.40 16 16 H 0.04 1.73 7.58 -2.38 -0.02 1.72 16 17 C -0.15 -3.82 9.48 71.98 0.68 -3.14 16 18 C 0.14 5.10 5.33 86.38 0.46 5.56 16 19 N -0.61 -27.78 2.78 -726.93 -2.02 -29.81 16 20 C 0.17 7.69 7.59 127.77 0.97 8.66 16 21 C -0.26 -13.83 9.68 84.04 0.81 -13.02 16 22 H 0.06 3.19 7.84 -2.91 -0.02 3.16 16 23 C -0.04 -1.92 5.13 84.87 0.44 -1.49 16 24 N -0.91 -49.05 9.70 21.65 0.21 -48.84 16 25 Si 0.95 44.76 29.57 68.60 2.03 46.79 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 27 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 28 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 29 H 0.09 3.78 6.31 -2.39 -0.02 3.77 16 30 H 0.03 1.24 7.02 -2.39 -0.02 1.22 16 31 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 32 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.21 3.20 8.06 -2.91 -0.02 3.17 16 35 H 0.40 13.34 7.16 -92.71 -0.66 12.68 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.06 2.19 8.03 -2.39 -0.02 2.17 16 40 H 0.07 2.16 7.86 -2.39 -0.02 2.15 16 41 H 0.02 0.95 5.99 -2.39 -0.01 0.93 16 42 H 0.01 0.69 7.18 -2.38 -0.02 0.67 16 43 H 0.03 0.94 7.84 -2.39 -0.02 0.92 16 44 H 0.24 13.10 8.31 -92.71 -0.77 12.33 16 Total: -1.00 -71.27 363.55 1.69 -69.58 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -1.54 Total: 21.78 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 6.08 Total: 11.06 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -4.81 Total: -121.46 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.07 Total: -27.74 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -71.27 1.69 -69.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.439 kcal (2) G-P(sol) polarization free energy of solvation -71.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds