Wall clock time and date at job start Tue Mar 31 2020 11:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46943 * 2 1 4 4 C 1.53004 * 109.46943 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.46716 * 185.14186 * 4 3 2 6 6 C 1.46900 * 111.00093 * 287.74031 * 5 4 3 7 7 C 1.50692 * 109.47238 * 164.28298 * 6 5 4 8 8 H 1.08006 * 120.00330 * 355.01960 * 7 6 5 9 9 C 1.37882 * 119.99886 * 175.00891 * 7 6 5 10 10 N 1.31512 * 119.99835 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00153 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47612 * 89.99399 * 11 9 7 13 13 H 1.48506 * 109.47206 * 209.99714 * 11 9 7 14 14 H 1.48504 * 109.47043 * 329.99119 * 11 9 7 15 15 C 1.46905 * 110.99568 * 163.79407 * 5 4 3 16 16 C 1.50705 * 109.46871 * 293.94738 * 15 5 4 17 17 C 1.39330 * 119.12297 * 95.00579 * 16 15 5 18 18 C 1.36577 * 119.93558 * 180.02562 * 17 16 15 19 19 C 1.40773 * 118.15267 * 359.97438 * 18 17 16 20 20 C 1.40398 * 121.36438 * 179.97438 * 19 18 17 21 21 C 1.36344 * 119.60162 * 179.97438 * 20 19 18 22 22 F 1.35107 * 119.59225 * 179.97438 * 21 20 19 23 23 C 1.39576 * 120.81725 * 0.04689 * 21 20 19 24 24 C 1.36032 * 121.03560 * 359.97175 * 23 21 20 25 25 C 1.40615 * 119.78487 * 0.02562 * 24 23 21 26 26 N 1.31079 * 119.12749 * 274.73148 * 16 15 5 27 27 H 1.09003 * 109.46785 * 60.00066 * 1 2 3 28 28 H 1.09005 * 109.47286 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47173 * 299.99784 * 1 2 3 30 30 H 1.08999 * 109.46734 * 240.00442 * 2 1 3 31 31 H 1.08995 * 109.47032 * 120.00167 * 2 1 3 32 32 H 1.09003 * 109.47010 * 60.00115 * 3 2 1 33 33 H 1.08995 * 109.47392 * 299.99946 * 3 2 1 34 34 H 1.08993 * 109.46854 * 65.14168 * 4 3 2 35 35 H 1.09005 * 109.47180 * 305.13541 * 4 3 2 36 36 H 1.08997 * 109.47286 * 284.28729 * 6 5 4 37 37 H 1.09005 * 109.46528 * 44.28377 * 6 5 4 38 38 H 0.97001 * 119.99997 * 180.02562 * 10 9 7 39 39 H 1.08996 * 109.47616 * 53.95050 * 15 5 4 40 40 H 1.09001 * 109.47035 * 173.95245 * 15 5 4 41 41 H 1.07998 * 120.03460 * 359.97232 * 17 16 15 42 42 H 1.07995 * 120.92533 * 179.97438 * 18 17 16 43 43 H 1.08002 * 120.20087 * 0.02747 * 20 19 18 44 44 H 1.07992 * 119.48205 * 179.97438 * 23 21 20 45 45 H 1.08004 * 120.10729 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8219 0.1235 6 6 3.8406 3.5723 -1.1203 7 6 3.9867 5.0474 -0.8494 8 1 4.1391 5.3986 0.1605 9 6 3.9260 5.9489 -1.8909 10 7 4.0540 7.2363 -1.6546 11 14 3.6621 5.3417 -3.6376 12 1 2.2068 5.2867 -3.9281 13 1 4.3221 6.2708 -4.5897 14 1 4.2477 3.9849 -3.7838 15 6 5.4770 2.8447 0.5093 16 6 5.6280 2.2842 1.9000 17 6 5.9449 0.9365 2.0573 18 6 6.0852 0.4110 3.3101 19 6 5.9017 1.2660 4.4133 20 6 6.0293 0.7969 5.7304 21 6 5.8444 1.6566 6.7724 22 9 5.9667 1.2049 8.0398 23 6 5.5288 2.9972 6.5460 24 6 5.3977 3.4831 5.2821 25 6 5.5811 2.6266 4.1821 26 7 5.4632 3.0786 2.9295 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9329 1.0106 -0.9333 35 1 3.9337 0.8509 0.8396 36 1 4.5755 3.2649 -1.8643 37 1 2.8373 3.3692 -1.4951 38 1 4.0110 7.8705 -2.3873 39 1 6.0539 2.2403 -0.1907 40 1 5.8424 3.8714 0.4897 41 1 6.0786 0.3078 1.1894 42 1 6.3302 -0.6314 3.4505 43 1 6.2733 -0.2385 5.9172 44 1 5.3865 3.6592 7.3873 45 1 5.1527 4.5230 5.1242 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141646310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:55 Heat of formation + Delta-G solvation = 3.173342 kcal Electronic energy + Delta-G solvation = -25811.668481 eV Core-core repulsion = 22129.144724 eV Total energy + Delta-G solvation = -3682.523757 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.165 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.07805 -40.84532 -37.93530 -36.48243 -34.38792 -33.55503 -32.46823 -30.88321 -30.12090 -28.99357 -27.66193 -25.40221 -24.08153 -22.84541 -22.49262 -22.05802 -20.94695 -19.78620 -18.55297 -17.69550 -16.94774 -16.80490 -15.81250 -15.60394 -15.47978 -15.05436 -14.80841 -14.55897 -14.21432 -14.01508 -13.97630 -13.57364 -13.37027 -13.21673 -13.09126 -12.72076 -12.48524 -12.32476 -12.13573 -11.77962 -11.66371 -11.26691 -11.25295 -11.09105 -10.90037 -10.69793 -10.62000 -10.48315 -10.31301 -10.06581 -9.84523 -9.29948 -9.25420 -8.74103 -8.54168 -8.25939 -7.41675 -6.01751 -3.98723 0.26852 0.67530 1.90081 2.69742 3.28493 3.36153 3.36772 3.99986 4.03652 4.23606 4.41919 4.43172 4.59249 4.68957 4.79827 4.84159 4.97153 5.13832 5.17854 5.27193 5.29427 5.34022 5.43737 5.55674 5.59832 5.73544 5.76090 5.83899 5.91440 5.94906 5.98514 5.99953 6.04470 6.08382 6.14419 6.17025 6.28750 6.34892 6.52483 6.58367 6.70968 6.75645 6.83950 6.91877 7.62303 7.84850 7.97671 8.14314 8.68480 9.12271 9.59830 11.11444 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012151 B = 0.003632 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.744553 B = 7706.487847 C = 9097.388382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.114 4.114 4 C 0.047 3.953 5 N -0.516 5.516 6 C 0.161 3.839 7 C -0.507 4.507 8 H 0.085 0.915 9 C 0.069 3.931 10 N -0.899 5.899 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.268 1.268 15 C 0.103 3.897 16 C 0.184 3.816 17 C -0.156 4.156 18 C -0.067 4.067 19 C -0.089 4.089 20 C -0.135 4.135 21 C 0.096 3.904 22 F -0.142 7.142 23 C -0.142 4.142 24 C -0.052 4.052 25 C 0.122 3.878 26 N -0.440 5.440 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.024 0.976 35 H 0.062 0.938 36 H -0.008 1.008 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.041 0.959 40 H 0.111 0.889 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 -16.489 11.282 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.152 4.152 4 C -0.081 4.081 5 N -0.240 5.240 6 C 0.036 3.964 7 C -0.545 4.545 8 H 0.103 0.897 9 C -0.132 4.132 10 N -0.538 5.538 11 Si 0.697 3.303 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.193 1.193 15 C -0.025 4.025 16 C 0.030 3.970 17 C -0.177 4.177 18 C -0.093 4.093 19 C -0.091 4.091 20 C -0.155 4.155 21 C 0.076 3.924 22 F -0.120 7.120 23 C -0.162 4.162 24 C -0.071 4.071 25 C -0.001 4.001 26 N -0.148 5.148 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.009 0.991 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.129 0.871 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.076 -15.159 11.569 19.182 hybrid contribution 0.480 -1.615 -1.274 2.112 sum 2.556 -16.774 10.294 19.846 Atomic orbital electron populations 1.21756 0.96094 1.00939 1.02006 1.21495 0.95709 0.97483 1.01279 1.21584 0.95030 0.95455 1.03153 1.22214 0.95768 0.91077 0.99043 1.61898 1.14866 1.10959 1.36272 1.20264 0.95740 0.94935 0.85499 1.21080 1.48822 0.88139 0.96462 0.89691 1.24892 0.95081 0.94785 0.98479 1.69896 1.50795 1.01107 1.32021 0.86954 0.78745 0.78990 0.85600 1.20224 1.21252 1.19265 1.21001 0.90756 1.03103 0.87629 1.21686 0.90361 0.89336 0.95614 1.21887 1.00981 0.96590 0.98207 1.21323 0.96907 0.99486 0.91555 1.18541 1.02194 0.94777 0.93590 1.20830 1.03582 1.00182 0.90900 1.17364 1.03049 0.93121 0.78829 1.91500 1.93602 1.89569 1.37349 1.20854 1.02804 0.94000 0.98536 1.20806 0.96117 1.00503 0.89639 1.19041 0.98082 0.90658 0.92284 1.68024 1.11893 1.37521 0.97378 0.92728 0.93279 0.92734 0.92514 0.92531 0.91209 0.91692 0.95768 0.91966 0.99065 0.95315 0.92742 0.94111 0.87103 0.84575 0.84426 0.84405 0.84154 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.12 -1.50 5.93 -26.73 -0.16 -1.66 16 3 C -0.11 -1.79 5.19 -26.73 -0.14 -1.93 16 4 C 0.05 0.77 4.82 -3.82 -0.02 0.76 16 5 N -0.52 -10.39 4.40 -237.51 -1.04 -11.43 16 6 C 0.16 3.77 3.67 -4.98 -0.02 3.75 16 7 C -0.51 -14.14 8.94 -34.44 -0.31 -14.45 16 8 H 0.09 2.64 7.96 -52.48 -0.42 2.22 16 9 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 11 Si 0.87 21.10 27.57 -169.99 -4.69 16.42 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.21 6.40 56.52 0.36 -5.85 16 15 C 0.10 1.90 5.11 -4.97 -0.03 1.88 16 16 C 0.18 3.01 5.70 -82.50 -0.47 2.54 16 17 C -0.16 -1.98 7.90 -39.78 -0.31 -2.30 16 18 C -0.07 -0.75 9.90 -39.22 -0.39 -1.14 16 19 C -0.09 -1.13 5.74 -106.81 -0.61 -1.75 16 20 C -0.14 -1.48 9.74 -39.45 -0.38 -1.86 16 21 C 0.10 1.08 7.24 -39.76 -0.29 0.79 16 22 F -0.14 -1.59 17.25 2.25 0.04 -1.56 16 23 C -0.14 -1.55 9.92 -39.87 -0.40 -1.95 16 24 C -0.05 -0.68 9.98 -39.48 -0.39 -1.07 16 25 C 0.12 1.84 6.60 -84.85 -0.56 1.28 16 26 N -0.44 -7.81 10.24 -7.21 -0.07 -7.89 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 1.10 6.74 -51.93 -0.35 0.75 16 34 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 35 H 0.06 0.92 5.51 -51.93 -0.29 0.63 16 36 H -0.01 -0.20 6.76 -51.93 -0.35 -0.55 16 37 H 0.03 0.68 6.07 -51.93 -0.32 0.36 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.04 0.67 8.01 -51.93 -0.42 0.25 16 40 H 0.11 2.37 7.19 -51.93 -0.37 1.99 16 41 H 0.14 1.40 7.99 -52.49 -0.42 0.98 16 42 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 44 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 45 H 0.15 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -31.28 369.44 -10.38 -41.66 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.75 Total: 0.37 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -4.20 Total: -16.54 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.34 Total: -45.91 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.69 Total: 16.42 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.28 -10.38 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141646310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.830 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds