Wall clock time and date at job start Tue Mar 31 2020 11:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38248 * 120.00202 * 2 1 4 4 C 1.38211 * 120.00299 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99629 * 359.97438 * 4 3 2 6 6 C 1.38210 * 120.00572 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00518 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.47136 * 119.99530 * 7 6 5 9 9 O 1.20824 * 120.00104 * 239.99854 * 8 7 6 10 10 O 1.34230 * 119.99717 * 60.00410 * 8 7 6 11 11 C 1.45199 * 116.99614 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47075 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47466 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99890 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00428 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00362 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99850 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47052 * 89.99717 * 17 15 13 19 19 H 1.48495 * 109.47307 * 209.99656 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00164 * 17 15 13 21 21 C 1.52997 * 109.47038 * 239.99853 * 7 6 5 22 22 C 1.53000 * 109.47049 * 180.02562 * 21 7 6 23 23 C 1.53003 * 109.46830 * 299.99733 * 22 21 7 24 24 C 1.52997 * 109.47087 * 60.00290 * 23 22 21 25 25 C 1.53000 * 109.47049 * 299.99575 * 24 23 22 26 26 C 1.38214 * 119.99672 * 180.16876 * 2 1 3 27 27 H 1.08998 * 109.47104 * 89.99839 * 1 2 3 28 28 H 1.08996 * 109.46981 * 209.99739 * 1 2 3 29 29 H 1.08999 * 109.46645 * 329.99138 * 1 2 3 30 30 H 1.08001 * 119.99931 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.00257 * 180.02562 * 4 3 2 32 32 H 1.08008 * 119.99691 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47177 * 299.99820 * 11 10 8 34 34 H 1.09001 * 109.47399 * 59.99991 * 11 10 8 35 35 H 1.09002 * 109.47153 * 300.00058 * 12 11 10 36 36 H 1.08998 * 109.47533 * 59.99688 * 12 11 10 37 37 H 0.96994 * 119.99814 * 180.02562 * 16 15 13 38 38 H 1.09005 * 109.46960 * 299.99669 * 21 7 6 39 39 H 1.09001 * 109.47231 * 59.99750 * 21 7 6 40 40 H 1.09001 * 109.47084 * 180.02562 * 22 21 7 41 41 H 1.08993 * 109.47550 * 59.99474 * 22 21 7 42 42 H 1.09001 * 109.47128 * 300.00175 * 23 22 21 43 43 H 1.09003 * 109.47306 * 180.02562 * 23 22 21 44 44 H 1.09005 * 109.46960 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.47231 * 59.99947 * 24 23 22 46 46 H 1.09001 * 109.47408 * 300.00263 * 25 24 23 47 47 H 1.09000 * 109.47102 * 180.02562 * 25 24 23 48 48 H 1.08002 * 120.00249 * 0.06835 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5807 -1.1971 0.0027 7 6 4.3341 -2.5022 0.0044 8 6 3.9696 -3.2910 1.2357 9 8 4.8252 -3.5981 2.0317 10 8 2.6945 -3.6525 1.4481 11 6 2.4167 -4.4113 2.6544 12 6 0.9217 -4.7292 2.7240 13 6 0.6333 -5.5172 3.9757 14 1 1.4360 -5.7661 4.6541 15 6 -0.6554 -5.9196 4.2556 16 7 -0.9071 -6.6070 5.3482 17 14 -2.0441 -5.4874 3.0834 18 1 -2.1919 -6.5649 2.0722 19 1 -3.3104 -5.3475 3.8463 20 1 -1.7340 -4.2062 2.3996 21 6 3.9649 -3.3058 -1.2440 22 6 4.7294 -4.6312 -1.2419 23 6 6.2338 -4.3521 -1.2414 24 6 6.6030 -3.5485 0.0070 25 6 5.8385 -2.2231 0.0049 26 6 2.1981 -1.1970 -0.0035 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8899 0.5140 30 1 1.6584 2.1326 0.0004 31 1 4.1205 2.1326 0.0010 32 1 5.3518 -0.0001 0.0016 33 1 2.9857 -5.3408 2.6382 34 1 2.7039 -3.8246 3.5270 35 1 0.3529 -3.7994 2.7405 36 1 0.6339 -5.3156 1.8515 37 1 -1.8136 -6.8904 5.5448 38 1 2.8932 -3.5050 -1.2441 39 1 4.2286 -2.7353 -2.1346 40 1 4.4667 -5.2035 -2.1316 41 1 4.4655 -5.2015 -0.3514 42 1 6.4978 -3.7817 -2.1320 43 1 6.7785 -5.2963 -1.2404 44 1 7.6747 -3.3493 0.0071 45 1 6.3390 -4.1188 0.8976 46 1 6.1025 -1.6527 -0.8856 47 1 6.1019 -1.6504 0.8941 48 1 1.6581 -2.1323 -0.0074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061504336.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:54 Heat of formation + Delta-G solvation = -92.703187 kcal Electronic energy + Delta-G solvation = -27551.669488 eV Core-core repulsion = 23956.155767 eV Total energy + Delta-G solvation = -3595.513721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.24133 -39.19608 -37.82276 -35.98205 -33.60869 -33.27917 -32.25439 -30.93100 -30.62620 -29.11793 -26.94241 -25.58719 -23.98576 -23.15312 -22.36869 -21.12590 -20.66041 -20.54711 -19.26926 -17.31082 -16.89729 -16.44490 -16.04240 -15.87337 -15.33036 -15.17745 -14.57734 -14.29842 -14.10124 -13.82309 -13.77117 -13.38862 -13.31624 -13.17365 -12.71709 -12.61511 -12.56702 -12.22417 -12.17658 -12.02265 -11.88739 -11.60588 -11.33825 -11.20399 -11.04277 -11.00261 -10.90538 -10.65684 -10.38384 -10.30241 -10.18041 -9.95116 -9.74880 -9.62700 -9.35144 -8.76830 -8.63380 -8.62955 -6.13814 -4.14826 1.24053 1.38081 2.54354 3.09356 3.26002 3.33531 3.37058 3.76771 4.35375 4.37134 4.40025 4.63380 4.83987 4.86979 4.96664 5.01652 5.09034 5.12700 5.19767 5.24976 5.33921 5.37278 5.39051 5.43964 5.52703 5.59790 5.63796 5.72143 5.78317 5.82352 5.92103 5.96818 5.98459 6.01735 6.06089 6.11105 6.13555 6.17115 6.18677 6.39660 6.42637 6.46649 6.55325 6.61311 6.85231 6.98530 7.19839 7.22475 7.61845 8.17741 8.39155 8.88135 9.45803 10.98888 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.004676 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.849588 B = 5985.952356 C = 7633.913214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.084 4.084 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.078 4.078 7 C -0.006 4.006 8 C 0.473 3.527 9 O -0.506 6.506 10 O -0.356 6.356 11 C 0.082 3.918 12 C -0.007 4.007 13 C -0.527 4.527 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.880 3.120 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.263 1.263 21 C -0.103 4.103 22 C -0.126 4.126 23 C -0.119 4.119 24 C -0.137 4.137 25 C -0.096 4.096 26 C -0.096 4.096 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.023 0.977 37 H 0.266 0.734 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.474 13.647 -17.088 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.084 4.084 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.137 4.137 6 C -0.078 4.078 7 C -0.007 4.007 8 C 0.315 3.685 9 O -0.395 6.395 10 O -0.273 6.273 11 C 0.009 3.991 12 C -0.045 4.045 13 C -0.565 4.565 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.707 3.293 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.140 4.140 22 C -0.164 4.164 23 C -0.156 4.156 24 C -0.174 4.174 25 C -0.134 4.134 26 C -0.114 4.114 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.541 13.437 -16.701 23.887 hybrid contribution -0.744 0.090 -0.228 0.783 sum 9.797 13.526 -16.929 23.781 Atomic orbital electron populations 1.20824 0.91047 1.03281 1.02246 1.19935 0.96266 0.92923 0.99295 1.21055 0.94291 0.97473 1.01009 1.21057 0.94271 0.97714 1.00841 1.21111 1.00112 0.91709 1.00770 1.19460 0.93650 0.93004 1.01709 1.19477 0.96614 0.92149 0.92428 1.23171 0.81341 0.77288 0.86672 1.90561 1.49892 1.52901 1.46157 1.86469 1.28127 1.66611 1.46055 1.23361 0.99824 0.93581 0.82298 1.19601 0.89161 0.97471 0.98254 1.20843 0.95392 1.34609 1.05614 0.90704 1.24929 0.98582 0.94280 0.95152 1.69895 1.20998 1.37516 1.25108 0.86772 0.81595 0.79744 0.81236 1.20055 1.21167 1.18743 1.21632 1.01425 0.95661 0.95310 1.21619 0.95356 0.96841 1.02553 1.21557 0.95762 1.00103 0.98204 1.21845 0.99363 0.96340 0.99849 1.21528 0.90846 0.98517 1.02480 1.21156 0.93390 0.98520 0.98340 0.91231 0.90910 0.91614 0.86267 0.86125 0.85591 0.91848 0.91875 0.95473 0.95898 0.92442 0.90244 0.90452 0.91214 0.91812 0.92146 0.91965 0.91952 0.89055 0.90663 0.90878 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.08 -1.04 5.88 -104.62 -0.62 -1.66 16 3 C -0.12 -1.32 9.70 -39.59 -0.38 -1.70 16 4 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 5 C -0.12 -1.35 8.98 -39.59 -0.36 -1.71 16 6 C -0.08 -1.01 4.75 -104.62 -0.50 -1.51 16 7 C -0.01 -0.07 0.56 -156.81 -0.09 -0.16 16 8 C 0.47 8.08 5.00 36.01 0.18 8.26 16 9 O -0.51 -9.71 13.41 -18.75 -0.25 -9.96 16 10 O -0.36 -6.70 8.27 -39.26 -0.32 -7.02 16 11 C 0.08 1.76 5.40 37.16 0.20 1.96 16 12 C -0.01 -0.18 4.42 -27.89 -0.12 -0.30 16 13 C -0.53 -14.96 9.66 -34.44 -0.33 -15.29 16 14 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 17 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 21 C -0.10 -1.18 4.48 -26.73 -0.12 -1.30 16 22 C -0.13 -1.43 5.70 -26.73 -0.15 -1.58 16 23 C -0.12 -1.21 5.92 -26.73 -0.16 -1.36 16 24 C -0.14 -1.58 5.63 -26.73 -0.15 -1.73 16 25 C -0.10 -1.09 3.03 -26.73 -0.08 -1.17 16 26 C -0.10 -1.32 8.12 -39.58 -0.32 -1.64 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 29 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 1.20 5.90 -52.48 -0.31 0.89 16 33 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 34 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 35 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 36 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 37 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.08 0.95 7.35 -51.93 -0.38 0.57 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.87 7.22 -51.93 -0.37 0.50 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.33 5.52 -51.93 -0.29 1.04 16 46 H 0.07 0.69 7.51 -51.93 -0.39 0.30 16 47 H 0.07 0.88 7.47 -51.93 -0.39 0.49 16 48 H 0.14 1.96 6.40 -52.49 -0.34 1.62 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -31.26 372.46 -9.88 -41.13 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.89 Total: 1.67 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -3.13 Total: -21.46 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.77 Total: -26.58 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.58 Total: -16.98 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.26 -9.88 -41.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061504336.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.568 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds