Wall clock time and date at job start Tue Mar 31 2020 11:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50710 * 109.46612 * 2 1 4 4 N 1.31029 * 126.15398 * 269.68126 * 3 2 1 5 5 N 1.28758 * 110.16305 * 179.88025 * 4 3 2 6 6 C 1.32365 * 109.23018 * 0.39646 * 5 4 3 7 7 C 1.40792 * 133.77632 * 179.76672 * 6 5 4 8 8 C 1.35903 * 119.13891 * 179.97438 * 7 6 5 9 9 C 1.40871 * 120.09557 * 359.97438 * 8 7 6 10 10 N 1.39094 * 119.59103 * 180.02562 * 9 8 7 11 11 C 1.46501 * 119.99485 * 359.97438 * 10 9 8 12 12 C 1.53032 * 109.46333 * 275.06649 * 11 10 9 13 13 C 1.53191 * 109.31568 * 178.61957 * 12 11 10 14 14 N 1.46922 * 108.77777 * 54.63460 * 13 12 11 15 15 C 1.36935 * 120.63231 * 126.36865 * 14 13 12 16 16 H 1.07995 * 119.99914 * 331.86848 * 15 14 13 17 17 C 1.38818 * 119.99775 * 151.86453 * 15 14 13 18 18 N 1.31617 * 120.00079 * 343.06643 * 17 15 14 19 19 Si 1.86802 * 119.99778 * 163.06642 * 17 15 14 20 20 H 1.48506 * 109.47033 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47132 * 119.99864 * 19 17 15 22 22 H 1.48492 * 109.47057 * 240.00161 * 19 17 15 23 23 C 1.46932 * 118.73641 * 306.39495 * 14 13 12 24 24 C 1.53049 * 109.45352 * 155.00092 * 11 10 9 25 25 N 1.31239 * 120.82398 * 359.97438 * 9 8 7 26 26 N 1.34979 * 126.15442 * 90.00181 * 3 2 1 27 27 H 1.09005 * 109.46869 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47252 * 300.00030 * 1 2 3 29 29 H 1.09001 * 109.46759 * 60.00431 * 1 2 3 30 30 H 1.08994 * 109.47252 * 239.99970 * 2 1 3 31 31 H 1.09001 * 109.46759 * 119.99569 * 2 1 3 32 32 H 1.08005 * 120.42928 * 0.02562 * 7 6 5 33 33 H 1.08005 * 119.95352 * 179.97438 * 8 7 6 34 34 H 0.96993 * 120.00255 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.45975 * 35.03554 * 11 10 9 36 36 H 1.08996 * 109.50029 * 298.57160 * 12 11 10 37 37 H 1.09002 * 109.49678 * 58.66814 * 12 11 10 38 38 H 1.09005 * 109.58264 * 294.84848 * 13 12 11 39 39 H 1.08993 * 109.70649 * 174.49774 * 13 12 11 40 40 H 0.97003 * 119.99475 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.58551 * 293.81506 * 23 14 13 42 42 H 1.09002 * 109.69970 * 173.46433 * 23 14 13 43 43 H 1.09002 * 109.50081 * 301.33244 * 24 11 10 44 44 H 1.09001 * 109.49931 * 61.40613 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4210 0.0000 4 7 2.2954 2.1478 -1.0580 5 7 2.7037 3.3163 -0.7033 6 6 2.7282 3.3870 0.6183 7 6 3.0849 4.3958 1.5333 8 6 2.9943 4.1430 2.8655 9 6 2.5479 2.8855 3.3172 10 7 2.4587 2.6383 4.6830 11 6 2.8285 3.6823 5.6420 12 6 4.3395 3.6432 5.8808 13 6 4.7272 4.7581 6.8573 14 7 3.9198 4.6203 8.0771 15 6 4.5190 4.5527 9.3065 16 1 5.5179 4.1527 9.3991 17 6 3.8424 4.9983 10.4338 18 7 2.7898 5.7777 10.3044 19 14 4.4260 4.4916 12.1344 20 1 5.6215 3.6196 12.0081 21 1 4.7780 5.7027 12.9182 22 1 3.3430 3.7500 12.8288 23 6 2.4571 4.5559 7.9526 24 6 2.0950 3.4432 6.9638 25 7 2.2141 1.9447 2.4652 26 7 2.2977 2.1718 1.0899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.4254 5.3584 1.1811 33 1 3.2650 4.9072 3.5791 34 1 2.1517 1.7748 5.0006 35 1 2.5490 4.6574 5.2430 36 1 4.6163 2.6773 6.3031 37 1 4.8612 3.7903 4.9351 38 1 4.5345 5.7283 6.3993 39 1 5.7847 4.6759 7.1079 40 1 2.3174 6.0893 11.0922 41 1 2.0795 5.5095 7.5840 42 1 2.0148 4.3389 8.9249 43 1 1.0191 3.4479 6.7890 44 1 2.3925 2.4788 7.3757 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068703002.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:28 Heat of formation + Delta-G solvation = 159.598024 kcal Electronic energy + Delta-G solvation = -26063.343910 eV Core-core repulsion = 22439.815949 eV Total energy + Delta-G solvation = -3623.527961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.34051 -39.62566 -37.80239 -35.27125 -34.85488 -33.04250 -32.77679 -31.15159 -30.17545 -29.38381 -29.08261 -25.24698 -25.02639 -24.15325 -23.22734 -22.38981 -21.93639 -21.02251 -19.67632 -18.44865 -18.24040 -17.10722 -16.73989 -16.62871 -15.44505 -14.98929 -14.86840 -14.55036 -14.29017 -14.02038 -13.89325 -13.73137 -13.60525 -13.22293 -13.03622 -12.77977 -12.60271 -12.38271 -11.84090 -11.72710 -11.49242 -11.44801 -11.29028 -11.10350 -10.91244 -10.87412 -10.81925 -10.57938 -10.37991 -10.31638 -10.13644 -9.88863 -9.81039 -8.72411 -8.64068 -8.33239 -6.87603 -5.95493 -3.38466 0.26256 1.21984 1.54967 2.54671 3.03955 3.06378 3.27558 3.36492 3.37884 3.79394 4.05406 4.27089 4.36294 4.40622 4.72423 4.90176 4.95098 4.97638 5.13669 5.17819 5.24664 5.30181 5.33928 5.39825 5.42904 5.54529 5.56790 5.75824 5.78232 5.85247 5.95000 5.99069 6.03414 6.14134 6.18606 6.24957 6.36001 6.54731 6.70830 6.75378 7.09579 7.24462 7.43406 7.66013 7.67035 8.27993 8.36377 9.04223 9.66733 10.21765 11.13566 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.031335 B = 0.002567 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.347857 B =10904.832589 C =11339.909097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 C 0.200 3.800 4 N -0.269 5.269 5 N -0.257 5.257 6 C 0.117 3.883 7 C 0.006 3.994 8 C -0.173 4.173 9 C 0.423 3.577 10 N -0.688 5.688 11 C 0.155 3.845 12 C -0.148 4.148 13 C 0.147 3.853 14 N -0.591 5.591 15 C -0.256 4.256 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.174 3.826 24 C -0.146 4.146 25 N -0.357 5.357 26 N -0.265 5.265 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.409 0.591 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.255 0.745 41 H 0.023 0.977 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.850 -7.101 -14.613 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 C -0.066 4.066 4 N -0.114 5.114 5 N -0.106 5.106 6 C -0.138 4.138 7 C -0.022 4.022 8 C -0.201 4.201 9 C 0.157 3.843 10 N -0.323 5.323 11 C 0.051 3.949 12 C -0.189 4.189 13 C 0.019 3.981 14 N -0.314 5.314 15 C -0.386 4.386 16 H 0.085 0.915 17 C -0.194 4.194 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C 0.047 3.953 24 C -0.186 4.186 25 N -0.189 5.189 26 N -0.039 5.039 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.186 0.814 33 H 0.180 0.820 34 H 0.245 0.755 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.113 0.887 43 H 0.077 0.923 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.065 -7.396 -15.848 17.755 hybrid contribution 0.305 -0.040 2.320 2.340 sum -2.759 -7.435 -13.528 15.681 Atomic orbital electron populations 1.21729 0.93551 1.02538 1.02577 1.19985 0.96696 0.85804 1.04598 1.24492 1.04659 0.97996 0.79449 1.74517 1.15916 0.98772 1.22217 1.74907 1.17572 1.12068 1.06043 1.22424 1.08303 0.89547 0.93517 1.20358 0.94058 0.97729 0.90009 1.21566 1.04180 0.97669 0.96655 1.19344 0.88127 0.89730 0.87127 1.45099 1.69453 1.18559 0.99218 1.21353 0.95756 0.89463 0.88292 1.22583 0.94252 1.02299 0.99727 1.20882 0.95840 0.93739 0.87589 1.44095 1.01165 1.84688 1.01457 1.19215 1.00924 1.34932 0.83511 0.91497 1.25062 0.98711 0.97153 0.98517 1.70012 1.21944 1.34015 1.28631 0.86225 0.78173 0.78036 0.84342 1.20206 1.21615 1.21470 1.20773 0.84445 0.92398 0.97647 1.22573 0.98449 1.03194 0.94421 1.75531 1.34990 1.24707 0.83675 1.46931 1.41647 1.10956 1.04387 0.91241 0.92533 0.91995 0.88336 0.89353 0.81429 0.81987 0.75469 0.90101 0.91520 0.92751 0.96139 0.92197 0.93498 0.95887 0.88739 0.92275 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.03 -0.30 6.56 -27.88 -0.18 -0.48 16 3 C 0.20 2.73 7.52 -155.03 -1.17 1.56 16 4 N -0.27 -4.16 12.21 32.78 0.40 -3.76 16 5 N -0.26 -4.06 12.33 31.13 0.38 -3.68 16 6 C 0.12 1.68 7.99 -156.07 -1.25 0.43 16 7 C 0.01 0.06 10.11 -39.45 -0.40 -0.33 16 8 C -0.17 -1.86 8.75 -39.42 -0.35 -2.20 16 9 C 0.42 5.22 7.73 -155.25 -1.20 4.02 16 10 N -0.69 -7.99 5.25 -53.65 -0.28 -8.27 16 11 C 0.15 2.01 2.10 -67.89 -0.14 1.87 16 12 C -0.15 -2.09 5.57 -26.62 -0.15 -2.23 16 13 C 0.15 2.61 6.52 -3.71 -0.02 2.58 16 14 N -0.59 -13.07 2.99 -172.32 -0.52 -13.58 16 15 C -0.26 -6.46 9.58 -15.06 -0.14 -6.60 16 16 H 0.07 1.67 7.88 -52.49 -0.41 1.26 16 17 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 18 N -0.90 -24.35 11.19 55.49 0.62 -23.73 16 19 Si 0.90 20.42 29.59 -169.99 -5.03 15.39 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.17 3.57 5.30 -3.71 -0.02 3.55 16 24 C -0.15 -2.24 5.55 -26.61 -0.15 -2.38 16 25 N -0.36 -4.89 11.96 31.32 0.37 -4.52 16 26 N -0.26 -3.82 4.02 -9.61 -0.04 -3.86 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 33 H 0.16 1.46 6.08 -52.48 -0.32 1.14 16 34 H 0.41 4.46 8.72 -40.82 -0.36 4.10 16 35 H 0.08 1.02 6.44 -51.93 -0.33 0.68 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.67 7.67 -51.93 -0.40 0.27 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 40 H 0.25 6.68 8.31 -40.82 -0.34 6.35 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -30.08 357.53 -9.92 -40.00 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.33 Total: 1.70 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -4.88 Total: -1.08 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: 0.94 Total: -61.39 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.08 -9.92 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068703002.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.594 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds