Wall clock time and date at job start Tue Mar 31 2020 11:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.46624 * 2 1 4 4 C 1.38231 * 120.00504 * 90.00359 * 3 2 1 5 5 C 1.38239 * 120.00683 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99301 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.99346 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47349 * 66.12423 * 7 6 5 9 9 C 1.52999 * 109.46849 * 306.11936 * 7 6 5 10 10 C 1.50699 * 109.46661 * 186.12134 * 7 6 5 11 11 O 1.20820 * 120.00098 * 246.32216 * 10 7 6 12 12 O 1.34230 * 119.99898 * 66.32371 * 10 7 6 13 13 C 1.45206 * 116.99876 * 185.05636 * 12 10 7 14 14 C 1.53000 * 109.46965 * 184.81472 * 13 12 10 15 15 C 1.50706 * 115.54779 * 305.23023 * 14 13 12 16 16 H 1.08000 * 120.00191 * 278.65962 * 15 14 13 17 17 C 1.37870 * 119.99809 * 98.39274 * 15 14 13 18 18 N 1.31517 * 120.00117 * 174.82592 * 17 15 14 19 19 Si 1.86797 * 120.00216 * 354.81934 * 17 15 14 20 20 H 1.48504 * 109.47326 * 94.77128 * 19 17 15 21 21 H 1.48501 * 109.47444 * 214.76889 * 19 17 15 22 22 H 1.48497 * 109.47414 * 334.77169 * 19 17 15 23 23 C 1.52998 * 117.52050 * 90.93454 * 14 13 12 24 24 C 1.53000 * 60.00130 * 107.47972 * 23 14 13 25 25 C 1.38230 * 120.00328 * 0.25171 * 6 5 4 26 26 C 1.38236 * 119.99970 * 270.02018 * 3 2 1 27 27 H 1.09002 * 109.46958 * 300.00080 * 1 2 3 28 28 H 1.08994 * 109.47266 * 59.99791 * 1 2 3 29 29 H 1.09001 * 109.46966 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46981 * 240.00456 * 2 1 3 31 31 H 1.09000 * 109.47046 * 119.99829 * 2 1 3 32 32 H 1.08003 * 119.99518 * 359.97438 * 4 3 2 33 33 H 1.07990 * 120.00127 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.46867 * 184.63893 * 8 7 6 35 35 H 1.09000 * 109.46990 * 304.64028 * 8 7 6 36 36 H 1.08997 * 109.47040 * 64.63613 * 8 7 6 37 37 H 1.08997 * 109.47668 * 305.16394 * 9 7 6 38 38 H 1.08994 * 109.47162 * 65.17202 * 9 7 6 39 39 H 1.09008 * 109.46866 * 185.16555 * 9 7 6 40 40 H 1.09004 * 109.46934 * 64.81690 * 13 12 10 41 41 H 1.08996 * 109.47365 * 304.81580 * 13 12 10 42 42 H 0.96995 * 120.00505 * 179.97438 * 18 17 15 43 43 H 1.09006 * 117.49779 * 214.97056 * 23 14 13 44 44 H 1.08998 * 117.49876 * 359.97438 * 23 14 13 45 45 H 1.08995 * 117.49925 * 252.51029 * 24 23 14 46 46 H 1.09005 * 117.51744 * 107.48108 * 24 23 14 47 47 H 1.08006 * 120.00080 * 179.73161 * 25 6 5 48 48 H 1.07998 * 120.00125 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3757 1.1971 6 6 2.9541 4.0274 -0.0001 7 6 3.4564 5.4483 -0.0001 8 6 4.8700 5.4896 0.5837 9 6 2.5277 6.3173 0.8503 10 6 3.4808 5.9723 -1.4128 11 8 4.5350 6.2334 -1.9422 12 8 2.3313 6.1490 -2.0831 13 6 2.4347 6.5486 -3.4752 14 6 1.0359 6.8162 -4.0343 15 6 0.0498 5.6861 -3.8865 16 1 0.0583 4.8665 -4.5897 17 6 -0.8596 5.6959 -2.8502 18 7 -1.7853 4.7644 -2.7789 19 14 -0.7767 7.0319 -1.5474 20 1 -1.7046 8.1338 -1.9085 21 1 -1.1691 6.4656 -0.2318 22 1 0.6093 7.5588 -1.4659 23 6 0.4950 8.2437 -3.9323 24 6 0.9308 7.6859 -5.2886 25 6 2.7183 3.3776 -1.1972 26 6 2.2622 2.0726 -1.1972 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.0824 1.5635 2.1324 33 1 2.9043 3.8847 2.1323 34 1 5.2014 6.5251 0.6601 35 1 4.8674 5.0348 1.5743 36 1 5.5482 4.9381 -0.0675 37 1 1.5040 6.2158 0.4900 38 1 2.5804 5.9956 1.8903 39 1 2.8372 7.3599 0.7764 40 1 2.9084 5.7512 -4.0479 41 1 3.0352 7.4552 -3.5494 42 1 -2.4249 4.7710 -2.0497 43 1 -0.5742 8.3655 -3.7582 44 1 1.1355 8.9925 -3.4664 45 1 1.8582 8.0678 -5.7153 46 1 0.1487 7.4406 -6.0072 47 1 2.8940 3.8882 -2.1326 48 1 2.0816 1.5638 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079168449.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:18 Heat of formation + Delta-G solvation = -48.250967 kcal Electronic energy + Delta-G solvation = -27979.414960 eV Core-core repulsion = 24385.828832 eV Total energy + Delta-G solvation = -3593.586128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63300 -39.03482 -37.27496 -35.81570 -35.34913 -33.00269 -32.02783 -30.71740 -28.59110 -27.57420 -26.99773 -25.39328 -24.32468 -23.29925 -21.97042 -21.72423 -20.83496 -19.21598 -19.05451 -17.39397 -16.80282 -16.15345 -15.94706 -15.20184 -15.03555 -14.79157 -14.65932 -13.98329 -13.77940 -13.53674 -13.43230 -13.21417 -13.11393 -12.78328 -12.64421 -12.51645 -12.31034 -12.22449 -12.10729 -11.73987 -11.58976 -11.28104 -11.20254 -11.08966 -11.01249 -10.81743 -10.64838 -10.48256 -10.41090 -10.23403 -9.94983 -9.85865 -9.42270 -9.09456 -8.61787 -8.52337 -8.48315 -8.28917 -6.06390 -4.10409 1.54849 1.69896 2.62460 3.12170 3.39254 3.48391 3.60828 3.96906 4.52731 4.67003 4.69418 4.89482 4.97545 5.03264 5.08077 5.22021 5.24386 5.31459 5.38067 5.49305 5.63356 5.64507 5.67286 5.68109 5.74494 5.80328 5.87869 5.88597 5.92483 5.97465 6.01723 6.09649 6.12024 6.15259 6.24776 6.30443 6.32964 6.37897 6.39685 6.40525 6.62570 6.66573 6.80507 6.84296 6.88163 7.03029 7.16585 7.25960 7.73116 8.31251 8.48654 8.93216 9.58507 11.04447 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.006118 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.007826 B = 4575.317426 C = 5770.263554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.083 4.083 4 C -0.121 4.121 5 C -0.107 4.107 6 C -0.078 4.078 7 C -0.013 4.013 8 C -0.126 4.126 9 C -0.142 4.142 10 C 0.464 3.536 11 O -0.522 6.522 12 O -0.314 6.314 13 C 0.107 3.893 14 C -0.001 4.001 15 C -0.488 4.488 16 H 0.077 0.923 17 C 0.090 3.910 18 N -0.895 5.895 19 Si 0.880 3.120 20 H -0.291 1.291 21 H -0.298 1.298 22 H -0.240 1.240 23 C -0.201 4.201 24 C -0.170 4.170 25 C -0.090 4.090 26 C -0.103 4.103 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.263 0.737 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.122 0.878 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.956 -3.594 8.844 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.083 4.083 4 C -0.139 4.139 5 C -0.125 4.125 6 C -0.078 4.078 7 C -0.014 4.014 8 C -0.183 4.183 9 C -0.199 4.199 10 C 0.307 3.693 11 O -0.413 6.413 12 O -0.228 6.228 13 C 0.033 3.967 14 C -0.002 4.002 15 C -0.525 4.525 16 H 0.095 0.905 17 C -0.114 4.114 18 N -0.531 5.531 19 Si 0.709 3.291 20 H -0.219 1.219 21 H -0.226 1.226 22 H -0.163 1.163 23 C -0.238 4.238 24 C -0.208 4.208 25 C -0.108 4.108 26 C -0.121 4.121 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.112 0.888 47 H 0.140 0.860 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.077 -3.570 8.752 13.105 hybrid contribution -0.152 0.852 0.534 1.016 sum 8.925 -2.719 9.286 13.163 Atomic orbital electron populations 1.21763 0.94536 1.01363 1.02940 1.20513 0.96393 0.92651 1.02312 1.19883 0.98932 0.96322 0.93211 1.20860 1.00950 0.94766 0.97316 1.20758 1.00178 0.94762 0.96847 1.19331 1.01079 0.93373 0.94047 1.19448 0.98402 0.93355 0.90240 1.21752 0.93062 1.02869 1.00637 1.21940 1.00107 0.98673 0.99182 1.23404 0.82654 0.74356 0.88880 1.90586 1.32576 1.48109 1.69996 1.86793 1.32171 1.77425 1.26443 1.22811 0.98407 0.98118 0.77366 1.19369 0.92775 0.91124 0.96973 1.20080 1.13740 1.05332 1.13344 0.90507 1.24892 0.94017 0.95522 0.96923 1.69895 1.16710 1.34455 1.32047 0.86889 0.79753 0.81650 0.80780 1.21877 1.22578 1.16333 1.22980 1.00972 0.98491 1.01337 1.22902 1.01488 1.05083 0.91303 1.21121 0.97607 0.94663 0.97405 1.20983 0.98797 0.94640 0.97682 0.92662 0.91800 0.92717 0.91194 0.91471 0.86335 0.86161 0.91744 0.91326 0.91388 0.90739 0.91127 0.91884 0.91839 0.93465 0.92743 0.89250 0.90727 0.90825 0.88826 0.85998 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.89 37.16 0.37 -1.47 16 2 C -0.08 -0.96 6.06 -27.88 -0.17 -1.13 16 3 C -0.08 -1.21 5.13 -104.63 -0.54 -1.75 16 4 C -0.12 -1.65 9.70 -39.58 -0.38 -2.03 16 5 C -0.11 -1.52 8.73 -39.58 -0.35 -1.86 16 6 C -0.08 -1.29 4.75 -104.62 -0.50 -1.79 16 7 C -0.01 -0.21 0.80 -156.81 -0.13 -0.34 16 8 C -0.13 -1.66 7.80 37.16 0.29 -1.37 16 9 C -0.14 -2.14 7.96 37.16 0.30 -1.84 16 10 C 0.46 9.02 4.96 36.01 0.18 9.20 16 11 O -0.52 -10.72 15.55 -18.75 -0.29 -11.01 16 12 O -0.31 -6.84 6.24 -39.26 -0.24 -7.08 16 13 C 0.11 2.28 5.45 37.16 0.20 2.48 16 14 C 0.00 -0.03 1.39 -155.66 -0.22 -0.25 16 15 C -0.49 -13.35 9.22 -34.44 -0.32 -13.67 16 16 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 17 C 0.09 2.54 5.46 -17.82 -0.10 2.44 16 18 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 19 Si 0.88 21.99 22.98 -169.99 -3.91 18.09 16 20 H -0.29 -7.25 6.99 56.52 0.39 -6.86 16 21 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 22 H -0.24 -5.66 5.30 56.52 0.30 -5.36 16 23 C -0.20 -4.29 7.15 -26.73 -0.19 -4.48 16 24 C -0.17 -3.40 9.95 -26.73 -0.27 -3.66 16 25 C -0.09 -1.64 8.93 -39.58 -0.35 -2.00 16 26 C -0.10 -1.72 9.70 -39.58 -0.38 -2.11 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 32 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.12 1.37 7.15 -52.49 -0.38 1.00 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.73 7.63 -51.93 -0.40 0.33 16 36 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 37 H 0.07 1.33 7.48 -51.93 -0.39 0.94 16 38 H 0.07 0.84 7.28 -51.93 -0.38 0.46 16 39 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.09 2.03 6.17 -51.93 -0.32 1.71 16 44 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 47 H 0.12 2.43 5.99 -52.48 -0.31 2.12 16 48 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -31.02 380.59 -8.63 -39.65 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -8.15 Total: 6.28 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -2.55 Total: -25.62 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.77 Total: -26.03 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.54 Total: -18.10 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -3.91 Total: 18.09 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.02 -8.63 -39.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079168449.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.601 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds