Wall clock time and date at job start Tue Mar 31 2020 11:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47000 * 2 1 4 4 C 1.53001 * 109.47251 * 120.00352 * 2 1 3 5 5 H 1.09000 * 109.46887 * 56.55609 * 4 2 1 6 6 C 1.53000 * 109.46857 * 176.55521 * 4 2 1 7 7 C 1.50703 * 109.47078 * 296.42656 * 6 4 2 8 8 C 1.38236 * 119.99411 * 98.87838 * 7 6 4 9 9 C 1.38242 * 119.99443 * 179.97438 * 8 7 6 10 10 C 1.38231 * 120.00087 * 359.95609 * 9 8 7 11 11 C 1.38237 * 120.00009 * 0.27724 * 10 9 8 12 12 C 1.38228 * 119.99989 * 278.85382 * 7 6 4 13 13 C 1.50697 * 109.46705 * 296.55423 * 4 2 1 14 14 O 1.20819 * 120.00022 * 260.61917 * 13 4 2 15 15 O 1.34233 * 119.99874 * 80.62977 * 13 4 2 16 16 C 1.45202 * 117.00008 * 180.45193 * 15 13 4 17 17 C 1.52999 * 109.47206 * 185.37009 * 16 15 13 18 18 C 1.50696 * 115.55113 * 306.46294 * 17 16 15 19 19 H 1.08004 * 119.99653 * 144.96529 * 18 17 16 20 20 C 1.37874 * 120.00021 * 324.97031 * 18 17 16 21 21 N 1.31513 * 120.00035 * 355.55709 * 20 18 17 22 22 Si 1.86806 * 119.99898 * 175.55718 * 20 18 17 23 23 H 1.48501 * 109.46886 * 89.99786 * 22 20 18 24 24 H 1.48498 * 109.46970 * 209.99984 * 22 20 18 25 25 H 1.48497 * 109.46960 * 329.99885 * 22 20 18 26 26 C 1.53000 * 117.49706 * 160.79360 * 17 16 15 27 27 C 1.53000 * 117.49669 * 92.13515 * 17 16 15 28 28 H 1.08996 * 109.47061 * 307.35915 * 1 2 3 29 29 H 1.08997 * 109.47262 * 67.36447 * 1 2 3 30 30 H 1.08998 * 109.46524 * 187.36230 * 1 2 3 31 31 H 1.08999 * 109.46714 * 240.00594 * 2 1 3 32 32 H 1.09001 * 109.47366 * 63.72708 * 3 2 1 33 33 H 1.09004 * 109.47544 * 183.72404 * 3 2 1 34 34 H 1.09004 * 109.47806 * 303.72426 * 3 2 1 35 35 H 1.08997 * 109.46557 * 176.42728 * 6 4 2 36 36 H 1.08997 * 109.47262 * 56.43107 * 6 4 2 37 37 H 1.07998 * 120.00536 * 359.97438 * 8 7 6 38 38 H 1.07998 * 119.99941 * 179.97438 * 9 8 7 39 39 H 1.07995 * 120.00122 * 180.02562 * 10 9 8 40 40 H 1.08002 * 120.00157 * 179.72522 * 11 10 9 41 41 H 1.07998 * 120.00102 * 0.02562 * 12 7 6 42 42 H 1.09000 * 109.46832 * 305.37607 * 16 15 13 43 43 H 1.09005 * 109.47093 * 65.36706 * 16 15 13 44 44 H 0.97000 * 119.99986 * 175.10791 * 21 20 18 45 45 H 1.08998 * 117.49721 * 359.97438 * 26 17 16 46 46 H 1.08999 * 117.50039 * 145.02040 * 26 17 16 47 47 H 1.09000 * 117.50062 * 214.98333 * 27 17 16 48 48 H 1.09004 * 117.49554 * 359.97358 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6272 -1.7296 1.2805 6 6 3.5677 -0.7968 1.2065 7 6 3.9967 -1.6290 0.0256 8 6 4.3997 -1.0126 -1.1443 9 6 4.7937 -1.7760 -2.2273 10 6 4.7857 -3.1555 -2.1401 11 6 4.3781 -3.7719 -0.9718 12 6 3.9878 -3.0085 0.1125 13 6 1.6087 0.0367 2.4781 14 8 2.3839 0.7785 3.0335 15 8 0.3632 -0.1126 2.9559 16 6 0.0137 0.6563 4.1370 17 6 -1.3863 0.2583 4.6088 18 6 -2.4709 0.3383 3.5657 19 1 -3.2754 -0.3823 3.5668 20 6 -2.4362 1.3314 2.6099 21 7 -1.5065 2.2602 2.6601 22 14 -3.7098 1.3575 1.2436 23 1 -4.8833 2.1583 1.6760 24 1 -3.1168 1.9662 0.0257 25 1 -4.1417 -0.0311 0.9429 26 6 -1.7677 0.5949 6.0518 27 6 -1.4900 -0.8563 5.6518 28 1 -0.3633 0.6236 0.8168 29 1 -0.3633 0.3955 -0.9485 30 1 -0.3632 -1.0192 0.1317 31 1 1.8933 -0.5137 -0.8900 32 1 1.7323 1.9367 0.9215 33 1 3.1280 1.4433 -0.0667 34 1 1.6233 1.9753 -0.8547 35 1 3.9346 -1.2537 2.1255 36 1 3.9786 0.2083 1.1112 37 1 4.4066 0.0652 -1.2122 38 1 5.1082 -1.2946 -3.1415 39 1 5.0939 -3.7519 -2.9861 40 1 4.3676 -4.8498 -0.9051 41 1 3.6729 -3.4900 1.0266 42 1 0.7352 0.4541 4.9287 43 1 0.0274 1.7192 3.8959 44 1 -1.4382 2.9169 1.9495 45 1 -1.0211 1.0994 6.6651 46 1 -2.8032 0.8738 6.2467 47 1 -2.3428 -1.5316 5.5836 48 1 -0.5608 -1.3064 6.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174751039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:51 Heat of formation + Delta-G solvation = -55.248366 kcal Electronic energy + Delta-G solvation = -27627.111534 eV Core-core repulsion = 24033.221976 eV Total energy + Delta-G solvation = -3593.889558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.21103 -39.12143 -37.00127 -35.97294 -34.90942 -32.51868 -32.16595 -30.95692 -29.04648 -27.03425 -26.43407 -25.42722 -24.33130 -22.62443 -21.45713 -21.29193 -21.06298 -19.15975 -18.63278 -17.01462 -16.57479 -16.40403 -16.00532 -15.25442 -15.20131 -14.92283 -14.70968 -13.97652 -13.88142 -13.66620 -13.50152 -13.27703 -13.02393 -12.80924 -12.56684 -12.04005 -11.93715 -11.84823 -11.74425 -11.45577 -11.20465 -11.06853 -11.01157 -10.96322 -10.82877 -10.54993 -10.48735 -10.40847 -10.33093 -10.28249 -9.81214 -9.37938 -9.30203 -9.05029 -8.96083 -8.77620 -8.70271 -8.15888 -6.01879 -4.10476 1.29060 1.34306 3.05808 3.25522 3.33827 3.37558 3.54824 3.80927 4.36325 4.74873 4.79242 4.93039 4.96902 4.99215 5.06248 5.09258 5.25731 5.42854 5.45073 5.49853 5.55315 5.70470 5.76722 5.77878 5.95157 5.98123 6.03509 6.05759 6.08057 6.18766 6.22632 6.30976 6.40668 6.43366 6.44716 6.46840 6.49901 6.62672 6.63758 6.64322 6.69259 6.82723 6.95288 6.99324 7.08413 7.24278 7.45871 7.64401 7.89638 8.33348 8.73854 8.87639 9.50903 10.96444 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.004091 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.603061 B = 6842.099139 C = 7565.404889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.079 4.079 3 C -0.153 4.153 4 C -0.071 4.071 5 H 0.098 0.902 6 C -0.070 4.070 7 C -0.070 4.070 8 C -0.113 4.113 9 C -0.120 4.120 10 C -0.129 4.129 11 C -0.119 4.119 12 C -0.117 4.117 13 C 0.463 3.537 14 O -0.530 6.530 15 O -0.317 6.317 16 C 0.116 3.884 17 C 0.049 3.951 18 C -0.478 4.478 19 H 0.060 0.940 20 C 0.080 3.920 21 N -0.881 5.881 22 Si 0.886 3.114 23 H -0.282 1.282 24 H -0.283 1.283 25 H -0.272 1.272 26 C -0.195 4.195 27 C -0.210 4.210 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.021 0.979 43 H 0.115 0.885 44 H 0.261 0.739 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.134 -7.461 -8.349 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.097 4.097 3 C -0.210 4.210 4 C -0.091 4.091 5 H 0.116 0.884 6 C -0.107 4.107 7 C -0.070 4.070 8 C -0.131 4.131 9 C -0.138 4.138 10 C -0.147 4.147 11 C -0.137 4.137 12 C -0.135 4.135 13 C 0.307 3.693 14 O -0.422 6.422 15 O -0.231 6.231 16 C 0.043 3.957 17 C 0.049 3.951 18 C -0.515 4.515 19 H 0.078 0.922 20 C -0.123 4.123 21 N -0.518 5.518 22 Si 0.713 3.287 23 H -0.208 1.208 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.233 4.233 27 C -0.248 4.248 28 H 0.108 0.892 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.039 0.961 43 H 0.133 0.867 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.096 0.904 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.326 -7.026 -8.223 15.660 hybrid contribution -0.655 0.042 -0.584 0.878 sum 10.671 -6.984 -8.807 15.499 Atomic orbital electron populations 1.22055 0.93624 1.03263 1.02981 1.21024 0.97049 0.96151 0.95516 1.21972 1.00325 0.95864 1.02822 1.21061 0.95433 1.00488 0.92084 0.88389 1.20541 0.93588 1.00686 0.95900 1.19857 0.98050 0.93829 0.95293 1.21135 0.99182 1.00040 0.92786 1.21129 1.00158 0.94036 0.98520 1.21109 1.00824 0.94833 0.97900 1.21122 0.99442 0.99718 0.93439 1.21097 1.00014 0.93380 0.98966 1.23228 0.81162 0.80191 0.84750 1.90565 1.54548 1.37374 1.59677 1.86522 1.29007 1.63059 1.44478 1.22804 0.92994 0.98419 0.81457 1.18904 0.92967 0.95568 0.87690 1.20426 1.07310 1.12158 1.11571 0.92165 1.24832 0.95635 0.94390 0.97394 1.69800 1.33618 1.15784 1.32645 0.86699 0.81708 0.78417 0.81844 1.20777 1.20817 1.19699 1.22974 1.00677 0.97440 1.02219 1.22954 1.00859 0.91674 1.09268 0.89163 0.93476 0.92506 0.90330 0.91606 0.92831 0.92714 0.90484 0.89447 0.85939 0.86281 0.86442 0.86252 0.86001 0.96050 0.86742 0.92814 0.91511 0.89857 0.90372 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.62 37.16 0.32 -2.58 16 2 C -0.08 -1.22 2.47 -90.62 -0.22 -1.44 16 3 C -0.15 -2.38 8.58 37.15 0.32 -2.06 16 4 C -0.07 -1.13 2.11 -91.77 -0.19 -1.33 16 5 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 6 C -0.07 -0.96 4.06 -27.88 -0.11 -1.07 16 7 C -0.07 -0.85 4.40 -104.62 -0.46 -1.31 16 8 C -0.11 -1.27 8.55 -39.58 -0.34 -1.61 16 9 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 10 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 11 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 12 C -0.12 -1.31 9.73 -39.59 -0.39 -1.69 16 13 C 0.46 9.42 5.33 36.00 0.19 9.61 16 14 O -0.53 -11.74 15.34 -18.74 -0.29 -12.03 16 15 O -0.32 -7.30 8.46 -39.27 -0.33 -7.63 16 16 C 0.12 2.82 4.47 37.16 0.17 2.99 16 17 C 0.05 1.20 2.16 -155.66 -0.34 0.87 16 18 C -0.48 -12.61 8.78 -34.44 -0.30 -12.91 16 19 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 20 C 0.08 2.07 4.95 -17.82 -0.09 1.99 16 21 N -0.88 -23.29 10.38 55.43 0.58 -22.72 16 22 Si 0.89 20.46 29.54 -169.99 -5.02 15.43 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C -0.20 -4.32 9.96 -26.69 -0.27 -4.59 16 27 C -0.21 -4.54 9.92 -26.69 -0.26 -4.80 16 28 H 0.09 1.95 6.32 -51.93 -0.33 1.62 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.08 6.45 -51.93 -0.34 0.75 16 32 H 0.06 1.25 6.68 -51.93 -0.35 0.90 16 33 H 0.05 0.73 5.88 -51.93 -0.31 0.42 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.24 6.17 -51.93 -0.32 0.92 16 37 H 0.12 1.27 7.30 -52.49 -0.38 0.88 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.02 0.50 7.95 -51.93 -0.41 0.09 16 43 H 0.11 3.06 5.98 -51.93 -0.31 2.75 16 44 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 47 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 48 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -28.00 383.63 -10.24 -38.24 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.78 Total: 7.68 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -3.17 Total: -24.76 kcal Atomic # 7 Polarization: -23.29 SS G_CDS: 0.58 Total: -22.72 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.62 Total: -19.66 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.00 -10.24 -38.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174751039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.012 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds