Wall clock time and date at job start Tue Mar 31 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47230 * 2 1 4 4 C 1.53002 * 109.46790 * 119.99610 * 2 1 3 5 5 H 1.09002 * 109.46921 * 184.53426 * 4 2 1 6 6 C 1.52998 * 109.47199 * 64.53623 * 4 2 1 7 7 C 1.50700 * 109.46985 * 64.65445 * 6 4 2 8 8 C 1.38241 * 119.99941 * 265.84322 * 7 6 4 9 9 C 1.38234 * 119.99751 * 179.76764 * 8 7 6 10 10 C 1.38240 * 120.00151 * 0.50866 * 9 8 7 11 11 C 1.38236 * 119.99855 * 359.74628 * 10 9 8 12 12 C 1.38228 * 119.99960 * 0.02562 * 11 10 9 13 13 C 1.50702 * 109.47404 * 304.53682 * 4 2 1 14 14 O 1.20822 * 120.00009 * 89.18907 * 13 4 2 15 15 O 1.34237 * 119.99684 * 269.19580 * 13 4 2 16 16 C 1.45194 * 116.99720 * 183.66460 * 15 13 4 17 17 C 1.53000 * 109.47329 * 182.16466 * 16 15 13 18 18 C 1.50699 * 115.54990 * 56.14354 * 17 16 15 19 19 H 1.08002 * 120.00457 * 212.09350 * 18 17 16 20 20 C 1.37879 * 119.99576 * 31.82022 * 18 17 16 21 21 N 1.31516 * 120.00325 * 7.76323 * 20 18 17 22 22 Si 1.86806 * 119.99788 * 187.76418 * 20 18 17 23 23 H 1.48494 * 109.47152 * 90.00148 * 22 20 18 24 24 H 1.48504 * 109.46703 * 209.99938 * 22 20 18 25 25 H 1.48494 * 109.47154 * 329.99627 * 22 20 18 26 26 C 1.52999 * 117.50339 * 201.82246 * 17 16 15 27 27 C 1.53005 * 117.49806 * 270.48056 * 17 16 15 28 28 H 1.09002 * 109.47902 * 303.39925 * 1 2 3 29 29 H 1.09000 * 109.47233 * 63.39646 * 1 2 3 30 30 H 1.08999 * 109.47705 * 183.39526 * 1 2 3 31 31 H 1.08998 * 109.47714 * 239.99606 * 2 1 3 32 32 H 1.08997 * 109.47302 * 170.80167 * 3 2 1 33 33 H 1.09006 * 109.46814 * 290.80025 * 3 2 1 34 34 H 1.08999 * 109.47757 * 50.80138 * 3 2 1 35 35 H 1.08996 * 109.47420 * 184.65294 * 6 4 2 36 36 H 1.08998 * 109.46981 * 304.65563 * 6 4 2 37 37 H 1.07995 * 119.99536 * 0.02562 * 8 7 6 38 38 H 1.07999 * 120.00028 * 180.23556 * 9 8 7 39 39 H 1.08001 * 119.99915 * 179.72295 * 10 9 8 40 40 H 1.07993 * 119.99727 * 179.97438 * 11 10 9 41 41 H 1.08000 * 120.00193 * 179.97438 * 12 11 10 42 42 H 1.09003 * 109.47336 * 62.16470 * 16 15 13 43 43 H 1.09001 * 109.47081 * 302.16447 * 16 15 13 44 44 H 0.96999 * 119.99779 * 184.75246 * 21 20 18 45 45 H 1.09004 * 117.49806 * 215.00686 * 26 17 16 46 46 H 1.08996 * 117.49567 * 0.02562 * 26 17 16 47 47 H 1.08996 * 117.49633 * 359.97438 * 27 17 16 48 48 H 1.09002 * 117.49842 * 144.97046 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0398 -0.7212 1.2493 5 1 3.1268 -0.6514 1.2909 6 6 1.6251 -2.1928 1.1937 7 6 2.3087 -2.8637 0.0302 8 6 1.6633 -2.9603 -1.1885 9 6 2.2923 -3.5714 -2.2571 10 6 3.5624 -4.0953 -2.1041 11 6 4.2056 -4.0033 -0.8839 12 6 3.5786 -3.3881 0.1833 13 6 1.4478 -0.0786 2.4772 14 8 0.3906 -0.4686 2.9131 15 8 2.0951 0.9273 3.0865 16 6 1.5077 1.4438 4.3098 17 6 2.3497 2.6123 4.8261 18 6 2.5531 3.7462 3.8544 19 1 3.4692 4.3177 3.8755 20 6 1.5718 4.0502 2.9348 21 7 0.4004 3.4561 3.0022 22 14 1.9062 5.3062 1.5930 23 1 2.4636 4.6197 0.4002 24 1 0.6386 5.9868 1.2252 25 1 2.8819 6.3106 2.0872 26 6 2.2328 2.9660 6.3100 27 6 3.4989 2.2867 5.7822 28 1 -0.3635 0.5657 0.8579 29 1 -0.3634 0.4602 -0.9189 30 1 -0.3634 -1.0258 0.0609 31 1 1.8934 -0.5139 -0.8899 32 1 3.1175 1.4469 0.1643 33 1 1.8170 1.9066 -0.9608 34 1 1.5488 2.0016 0.7964 35 1 1.9159 -2.6876 2.1203 36 1 0.5445 -2.2613 1.0689 37 1 0.6695 -2.5547 -1.3068 38 1 1.7897 -3.6436 -3.2102 39 1 4.0520 -4.5767 -2.9377 40 1 5.1977 -4.4129 -0.7643 41 1 4.0809 -3.3166 1.1367 42 1 1.4813 0.6550 5.0615 43 1 0.4932 1.7881 4.1085 44 1 -0.2656 3.6179 2.3159 45 1 2.3028 4.0188 6.5835 46 1 1.5564 2.3659 6.9186 47 1 3.6548 1.2401 6.0437 48 1 4.4022 2.8924 5.7082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174751049.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:54 Heat of formation + Delta-G solvation = -54.541017 kcal Electronic energy + Delta-G solvation = -27608.629720 eV Core-core repulsion = 24014.770835 eV Total energy + Delta-G solvation = -3593.858885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.19973 -39.11383 -37.02756 -35.96248 -34.84519 -32.55263 -32.18197 -30.96095 -29.08283 -27.04083 -26.43689 -25.43514 -24.33675 -22.65065 -21.45947 -21.28953 -21.05496 -19.14523 -18.65263 -17.00304 -16.56178 -16.45014 -15.91969 -15.27872 -15.22477 -14.94911 -14.70552 -13.96722 -13.88784 -13.69316 -13.51523 -13.31433 -12.99065 -12.83679 -12.58573 -12.00455 -11.92760 -11.80791 -11.74763 -11.49682 -11.26877 -11.07309 -11.01528 -10.96628 -10.79835 -10.57666 -10.50082 -10.42481 -10.32669 -10.30133 -9.79115 -9.40180 -9.22246 -9.07824 -8.96239 -8.79462 -8.71650 -8.14314 -6.01479 -4.10263 1.28052 1.33586 3.08779 3.26794 3.34413 3.36738 3.55044 3.80811 4.36587 4.73676 4.78329 4.92368 4.94471 4.97892 5.06156 5.09277 5.24878 5.40693 5.44476 5.51179 5.55163 5.68826 5.76179 5.77775 5.94363 5.96975 6.01346 6.04081 6.07101 6.14853 6.23767 6.30683 6.39485 6.39999 6.43395 6.43952 6.50709 6.61903 6.64316 6.66202 6.69910 6.82872 6.93495 6.94703 7.00524 7.24777 7.47873 7.67997 7.91811 8.34014 8.75846 8.87856 9.50754 10.95445 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.015970 B = 0.004101 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.845120 B = 6825.883808 C = 7544.906437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.156 4.156 4 C -0.071 4.071 5 H 0.097 0.903 6 C -0.071 4.071 7 C -0.071 4.071 8 C -0.113 4.113 9 C -0.121 4.121 10 C -0.128 4.128 11 C -0.119 4.119 12 C -0.116 4.116 13 C 0.464 3.536 14 O -0.525 6.525 15 O -0.322 6.322 16 C 0.112 3.888 17 C 0.050 3.950 18 C -0.478 4.478 19 H 0.060 0.940 20 C 0.079 3.921 21 N -0.879 5.879 22 Si 0.885 3.115 23 H -0.274 1.274 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.196 4.196 27 C -0.210 4.210 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.019 0.981 43 H 0.122 0.878 44 H 0.262 0.738 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -12.939 -9.014 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 C -0.213 4.213 4 C -0.091 4.091 5 H 0.115 0.885 6 C -0.108 4.108 7 C -0.071 4.071 8 C -0.131 4.131 9 C -0.139 4.139 10 C -0.146 4.146 11 C -0.137 4.137 12 C -0.134 4.134 13 C 0.307 3.693 14 O -0.416 6.416 15 O -0.236 6.236 16 C 0.039 3.961 17 C 0.049 3.951 18 C -0.515 4.515 19 H 0.079 0.921 20 C -0.124 4.124 21 N -0.516 5.516 22 Si 0.712 3.288 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.234 4.234 27 C -0.247 4.247 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.037 0.963 43 H 0.139 0.861 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.115 -12.945 -8.911 16.021 hybrid contribution 0.172 0.647 -0.562 0.874 sum 3.287 -12.298 -9.472 15.867 Atomic orbital electron populations 1.21991 0.94731 1.01886 1.02458 1.21053 0.96436 0.96775 0.95641 1.21980 1.01833 0.95116 1.02398 1.21035 1.01997 0.93964 0.92085 0.88509 1.20565 1.01513 0.92579 0.96171 1.19850 0.94577 0.97603 0.95065 1.21136 1.00224 0.99211 0.92550 1.21131 0.95401 0.98640 0.98694 1.21115 0.95453 1.00594 0.97465 1.21118 0.99800 0.99603 0.93222 1.21109 0.94734 0.98401 0.99175 1.23169 0.83312 0.78391 0.84378 1.90565 1.22598 1.62809 1.65601 1.86476 1.52118 1.45628 1.39420 1.22870 1.01559 0.91793 0.79875 1.18911 0.93866 0.94382 0.87928 1.20443 1.02041 1.13417 1.15645 0.92131 1.24853 0.94287 0.95933 0.97293 1.69781 1.04598 1.43762 1.33494 0.86701 0.77752 0.81618 0.82685 1.19961 1.21263 1.19921 1.22976 0.99930 0.99627 1.00904 1.22946 0.93350 0.98654 1.09792 0.91378 0.92922 0.92578 0.90156 0.92367 0.93294 0.90306 0.90604 0.89286 0.85883 0.86265 0.86428 0.86243 0.85989 0.96254 0.86085 0.92799 0.89871 0.91520 0.91382 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.40 37.15 0.31 -2.07 16 2 C -0.08 -1.23 2.45 -90.62 -0.22 -1.46 16 3 C -0.16 -2.76 8.76 37.16 0.33 -2.44 16 4 C -0.07 -1.14 2.07 -91.77 -0.19 -1.33 16 5 H 0.10 1.48 8.13 -51.93 -0.42 1.06 16 6 C -0.07 -0.97 4.21 -27.88 -0.12 -1.09 16 7 C -0.07 -0.85 4.58 -104.62 -0.48 -1.33 16 8 C -0.11 -1.26 8.16 -39.58 -0.32 -1.58 16 9 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 10 C -0.13 -1.23 10.05 -39.58 -0.40 -1.62 16 11 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 12 C -0.12 -1.30 9.72 -39.58 -0.38 -1.68 16 13 C 0.46 9.51 5.29 36.01 0.19 9.70 16 14 O -0.52 -11.73 15.01 -18.75 -0.28 -12.01 16 15 O -0.32 -7.49 9.38 -39.27 -0.37 -7.85 16 16 C 0.11 2.74 4.44 37.16 0.17 2.90 16 17 C 0.05 1.22 2.17 -155.66 -0.34 0.88 16 18 C -0.48 -12.73 8.85 -34.44 -0.30 -13.04 16 19 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 20 C 0.08 2.07 5.22 -17.82 -0.09 1.97 16 21 N -0.88 -23.57 10.44 55.43 0.58 -22.99 16 22 Si 0.89 20.54 29.55 -169.99 -5.02 15.51 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.20 -4.36 9.96 -26.70 -0.27 -4.63 16 27 C -0.21 -4.54 9.93 -26.69 -0.27 -4.81 16 28 H 0.07 1.30 6.76 -51.93 -0.35 0.94 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.78 5.91 -51.93 -0.31 0.47 16 31 H 0.08 1.09 6.18 -51.93 -0.32 0.77 16 32 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.69 7.32 -51.93 -0.38 1.31 16 35 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.09 1.25 6.05 -51.93 -0.31 0.93 16 37 H 0.12 1.27 7.67 -52.49 -0.40 0.87 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.02 0.45 8.10 -51.93 -0.42 0.03 16 43 H 0.12 3.27 5.73 -51.93 -0.30 2.98 16 44 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 45 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -28.33 385.39 -10.30 -38.64 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.83 Total: 7.70 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.18 Total: -24.80 kcal Atomic # 7 Polarization: -23.57 SS G_CDS: 0.58 Total: -22.99 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.65 Total: -19.86 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.33 -10.30 -38.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174751049.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.906 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds