Wall clock time and date at job start Tue Mar 31 2020 11:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38259 * 120.00204 * 2 1 4 4 C 1.38206 * 120.00014 * 180.24972 * 3 2 1 5 5 C 1.38261 * 119.99965 * 359.77270 * 4 3 2 6 6 C 1.38211 * 120.00302 * 0.02562 * 5 4 3 7 7 C 1.38218 * 119.99785 * 179.78965 * 2 1 3 8 8 C 1.50694 * 120.00028 * 359.97438 * 7 2 1 9 9 H 1.09004 * 115.56603 * 334.03388 * 8 7 2 10 10 C 1.53000 * 117.50012 * 188.34803 * 8 7 2 11 11 C 1.53001 * 60.00078 * 252.51133 * 10 8 7 12 12 H 1.08998 * 117.49759 * 107.51096 * 11 10 8 13 13 C 1.50703 * 117.49436 * 252.50885 * 11 10 8 14 14 O 1.20821 * 119.99883 * 68.61079 * 13 11 10 15 15 O 1.34222 * 119.99982 * 248.60376 * 13 11 10 16 16 C 1.45200 * 117.00094 * 180.02562 * 15 13 11 17 17 C 1.53006 * 109.47003 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47127 * 299.99754 * 17 16 15 19 19 C 1.52992 * 109.47223 * 60.00259 * 17 16 15 20 20 C 1.52999 * 109.46623 * 179.97438 * 17 16 15 21 21 C 1.50706 * 109.46953 * 179.97438 * 20 17 16 22 22 H 1.07999 * 119.99816 * 0.02562 * 21 20 17 23 23 C 1.37876 * 120.00344 * 180.02562 * 21 20 17 24 24 N 1.31514 * 119.99769 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00300 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46879 * 60.00096 * 25 23 21 27 27 H 1.48503 * 109.47151 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47196 * 300.00241 * 25 23 21 29 29 H 1.09005 * 109.46934 * 270.20739 * 1 2 3 30 30 H 1.08996 * 109.47143 * 30.20421 * 1 2 3 31 31 H 1.08992 * 109.47132 * 150.21231 * 1 2 3 32 32 H 1.07995 * 119.99948 * 0.04650 * 3 2 1 33 33 H 1.07998 * 120.00109 * 179.79102 * 4 3 2 34 34 H 1.07999 * 119.99903 * 179.97438 * 5 4 3 35 35 H 1.07995 * 120.00261 * 179.97438 * 6 5 4 36 36 H 1.08998 * 117.50300 * 145.01966 * 10 8 7 37 37 H 1.09002 * 117.51512 * 359.97438 * 10 8 7 38 38 H 1.08993 * 109.47475 * 60.00347 * 16 15 13 39 39 H 1.09000 * 109.47147 * 300.00141 * 16 15 13 40 40 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 41 41 H 1.09001 * 109.46832 * 60.00321 * 18 17 16 42 42 H 1.09004 * 109.47261 * 300.00303 * 18 17 16 43 43 H 1.09001 * 109.47066 * 299.99881 * 19 17 16 44 44 H 1.08996 * 109.47747 * 59.99547 * 19 17 16 45 45 H 1.09002 * 109.47103 * 179.97438 * 19 17 16 46 46 H 1.09000 * 109.47486 * 299.99829 * 20 17 16 47 47 H 1.09001 * 109.47362 * 60.00551 * 20 17 16 48 48 H 0.97000 * 120.00540 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1973 -0.0052 5 6 4.2717 -0.0001 -0.0057 6 6 3.5807 -1.1971 -0.0015 7 6 2.1981 -1.1970 0.0044 8 6 1.4446 -2.5020 0.0098 9 1 0.4439 -2.4657 0.4406 10 6 2.2542 -3.7845 0.2115 11 6 1.6737 -3.4549 -1.1652 12 1 2.3695 -3.1382 -1.9421 13 6 0.4986 -4.2713 -1.6383 14 8 -0.5737 -4.1591 -1.0930 15 8 0.6432 -5.1230 -2.6656 16 6 -0.5312 -5.8761 -3.0678 17 6 -0.1745 -6.7872 -4.2442 18 6 0.3126 -5.9363 -5.4188 19 6 0.9323 -7.7554 -3.8222 20 6 -1.4119 -7.5813 -4.6676 21 6 -1.0608 -8.4782 -5.8267 22 1 -0.0556 -8.4817 -6.2215 23 6 -2.0229 -9.2942 -6.3831 24 7 -3.2468 -9.2902 -5.9019 25 14 -1.5879 -10.4053 -7.8203 26 1 -0.5131 -11.3450 -7.4117 27 1 -2.7889 -11.1762 -8.2311 28 1 -1.1159 -9.5787 -8.9599 29 1 -0.3633 0.0037 1.0277 30 1 -0.3633 0.8881 -0.5170 31 1 -0.3633 -0.8918 -0.5105 32 1 1.6584 2.1326 0.0008 33 1 4.1205 2.1326 -0.0086 34 1 5.3517 -0.0001 -0.0102 35 1 4.1206 -2.1323 -0.0023 36 1 1.7863 -4.5918 0.7749 37 1 3.3320 -3.6846 0.3399 38 1 -1.3199 -5.1865 -3.3681 39 1 -0.8780 -6.4826 -2.2312 40 1 0.5662 -6.5853 -6.2570 41 1 1.1942 -5.3709 -5.1168 42 1 -0.4760 -5.2465 -5.7195 43 1 1.8140 -7.1900 -3.5202 44 1 0.5854 -8.3615 -2.9854 45 1 1.1861 -8.4047 -4.6601 46 1 -1.7585 -8.1875 -3.8307 47 1 -2.2008 -6.8918 -4.9682 48 1 -3.9237 -9.8645 -6.2930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195056676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:44 Heat of formation + Delta-G solvation = -62.661311 kcal Electronic energy + Delta-G solvation = -25738.156684 eV Core-core repulsion = 22143.945676 eV Total energy + Delta-G solvation = -3594.211007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73289 -39.77807 -37.65372 -36.44641 -35.32117 -33.12085 -32.33610 -30.92834 -27.55091 -27.15774 -26.64776 -26.40568 -24.78822 -24.20790 -22.79378 -21.71191 -20.76862 -19.97859 -18.24869 -17.87109 -16.78866 -16.46347 -16.12953 -16.08155 -15.41961 -15.18555 -14.59292 -14.49821 -14.08354 -13.82693 -13.62693 -13.38436 -13.20675 -12.84285 -12.53425 -12.46285 -12.42057 -12.25801 -12.09751 -12.04358 -11.47928 -11.27921 -11.21777 -11.00099 -10.95223 -10.85513 -10.75642 -10.59384 -10.44711 -10.28862 -10.28615 -10.20220 -9.73435 -9.22432 -9.06183 -8.95705 -8.76334 -8.36592 -6.00845 -4.02085 0.97649 1.09669 2.20897 2.80275 3.31926 3.32734 3.37599 3.39598 3.74795 4.26908 4.40001 4.45092 4.49601 4.61276 4.63843 4.74356 4.90842 5.01276 5.05076 5.24258 5.34594 5.34689 5.39932 5.42100 5.49963 5.51311 5.59219 5.64160 5.74970 5.78643 5.82091 5.93855 6.04979 6.19408 6.21209 6.22321 6.38181 6.38433 6.51996 6.63847 6.71141 6.71191 6.82069 7.11131 7.11917 7.13827 7.60347 7.72374 7.95434 7.98392 8.39470 9.01937 9.60869 11.10753 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.028900 B = 0.002205 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.639808 B =12698.132711 C =12907.884078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C -0.120 4.120 4 C -0.119 4.119 5 C -0.124 4.124 6 C -0.114 4.114 7 C -0.055 4.055 8 C -0.085 4.085 9 H 0.130 0.870 10 C -0.141 4.141 11 C -0.151 4.151 12 H 0.136 0.864 13 C 0.486 3.514 14 O -0.513 6.513 15 O -0.344 6.344 16 C 0.079 3.921 17 C -0.058 4.058 18 C -0.126 4.126 19 C -0.126 4.126 20 C 0.035 3.965 21 C -0.510 4.510 22 H 0.061 0.939 23 C 0.056 3.944 24 N -0.896 5.896 25 Si 0.891 3.109 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.277 1.277 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.043 0.957 45 H 0.065 0.935 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.036 19.039 13.700 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.142 4.142 6 C -0.132 4.132 7 C -0.055 4.055 8 C -0.103 4.103 9 H 0.148 0.852 10 C -0.178 4.178 11 C -0.170 4.170 12 H 0.153 0.847 13 C 0.329 3.671 14 O -0.402 6.402 15 O -0.260 6.260 16 C 0.006 3.994 17 C -0.058 4.058 18 C -0.183 4.183 19 C -0.183 4.183 20 C -0.002 4.002 21 C -0.548 4.548 22 H 0.079 0.921 23 C -0.146 4.146 24 N -0.535 5.535 25 Si 0.719 3.281 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.507 18.946 13.797 27.051 hybrid contribution -0.058 -0.667 -0.858 1.088 sum 13.448 18.279 12.938 26.123 Atomic orbital electron populations 1.20893 0.90963 1.03439 1.02602 1.19771 0.96282 0.92319 0.98786 1.21035 0.94291 0.97401 1.01080 1.21148 0.94310 0.98104 1.00143 1.21100 0.99869 0.92393 1.00879 1.21073 0.93468 0.98471 1.00178 1.18944 0.93027 0.92512 1.01060 1.21190 1.01146 0.88135 0.99824 0.85184 1.23210 1.00740 0.98688 0.95145 1.21856 0.98984 1.02252 0.93954 0.84661 1.22407 0.88521 0.78128 0.77998 1.90646 1.28436 1.65123 1.56042 1.86474 1.42145 1.50681 1.46717 1.23533 0.84389 0.93225 0.98247 1.20809 0.99388 0.93984 0.91646 1.21717 0.99331 0.98928 0.98350 1.21715 0.96860 0.98486 1.01259 1.19127 0.90316 0.94204 0.96577 1.21111 0.96287 1.22176 1.15225 0.92131 1.25019 0.95065 0.97244 0.97225 1.69955 1.02262 1.39542 1.41736 0.86667 0.77705 0.80789 0.82897 1.20268 1.21395 1.20263 0.90951 0.91447 0.90670 0.85983 0.86118 0.86016 0.85693 0.87393 0.86911 0.91605 0.91620 0.91549 0.94198 0.93782 0.94175 0.93788 0.91556 0.96351 0.96352 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.33 36.01 0.34 -0.71 16 2 C -0.07 -0.67 5.88 -104.62 -0.62 -1.29 16 3 C -0.12 -0.99 9.70 -39.59 -0.38 -1.38 16 4 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 5 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 6 C -0.11 -0.96 9.30 -39.58 -0.37 -1.32 16 7 C -0.06 -0.53 5.61 -104.62 -0.59 -1.12 16 8 C -0.08 -0.86 4.65 -91.77 -0.43 -1.28 16 9 H 0.13 1.43 6.45 -51.93 -0.33 1.10 16 10 C -0.14 -1.26 9.56 -26.73 -0.26 -1.51 16 11 C -0.15 -1.70 5.93 -91.77 -0.54 -2.24 16 12 H 0.14 1.37 8.14 -51.93 -0.42 0.94 16 13 C 0.49 7.45 7.74 36.01 0.28 7.73 16 14 O -0.51 -9.10 16.01 -18.75 -0.30 -9.40 16 15 O -0.34 -5.79 8.88 -39.24 -0.35 -6.14 16 16 C 0.08 1.48 4.32 37.16 0.16 1.64 16 17 C -0.06 -1.18 0.61 -154.51 -0.09 -1.28 16 18 C -0.13 -2.42 8.08 37.16 0.30 -2.12 16 19 C -0.13 -2.40 8.08 37.15 0.30 -2.10 16 20 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 21 C -0.51 -13.75 7.65 -34.44 -0.26 -14.02 16 22 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 23 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 24 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 25 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.07 0.74 6.65 -51.93 -0.35 0.40 16 32 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.13 0.84 6.02 -52.49 -0.32 0.52 16 36 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.11 0.75 6.18 -51.93 -0.32 0.43 16 38 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 39 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 40 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 41 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -30.91 388.47 -9.98 -40.89 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.73 Total: -0.28 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -3.17 Total: -21.43 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.74 Total: -25.82 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.65 Total: -15.54 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.91 -9.98 -40.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195056676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.776 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds