Wall clock time and date at job start Tue Mar 31 2020 10:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99892 * 2 1 4 4 H 1.48505 * 109.46695 * 272.91273 * 3 2 1 5 5 H 1.48493 * 109.47415 * 32.91295 * 3 2 1 6 6 H 1.48494 * 109.46766 * 152.91463 * 3 2 1 7 7 C 1.38810 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99328 * 339.36160 * 7 2 1 9 9 N 1.36933 * 120.00130 * 159.35804 * 7 2 1 10 10 C 1.46926 * 120.63335 * 332.62839 * 9 7 2 11 11 C 1.53195 * 108.77802 * 233.58931 * 10 9 7 12 12 C 1.53041 * 109.31046 * 305.36524 * 11 10 9 13 13 N 1.46497 * 109.46270 * 181.38690 * 12 11 10 14 14 C 1.34769 * 120.00369 * 154.71972 * 13 12 11 15 15 O 1.21288 * 119.99877 * 0.28110 * 14 13 12 16 16 C 1.50697 * 120.00170 * 180.27275 * 14 13 12 17 17 H 1.08998 * 109.47663 * 300.00242 * 16 14 13 18 18 C 1.53000 * 109.47288 * 180.02562 * 16 14 13 19 19 C 1.53002 * 109.47275 * 180.02562 * 18 16 14 20 20 C 1.53001 * 109.47221 * 60.00178 * 19 18 16 21 21 C 1.53000 * 109.46851 * 300.00082 * 20 19 18 22 22 F 1.39899 * 109.47018 * 180.02562 * 21 20 19 23 23 F 1.39906 * 109.47050 * 299.99828 * 21 20 19 24 24 C 1.53001 * 109.46927 * 60.00525 * 16 14 13 25 25 C 1.53039 * 109.54048 * 61.36377 * 12 11 10 26 26 C 1.46922 * 120.62827 * 152.60998 * 9 7 2 27 27 H 0.96999 * 119.99630 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.58843 * 113.79760 * 10 9 7 29 29 H 1.09007 * 109.58317 * 353.37516 * 10 9 7 30 30 H 1.08997 * 109.49898 * 185.41260 * 11 10 9 31 31 H 1.09003 * 109.52538 * 65.32620 * 11 10 9 32 32 H 1.08998 * 109.45569 * 301.35846 * 12 11 10 33 33 H 0.97001 * 119.99347 * 334.99715 * 13 12 11 34 34 H 1.08999 * 109.47321 * 300.00414 * 18 16 14 35 35 H 1.09007 * 109.47066 * 60.00168 * 18 16 14 36 36 H 1.08999 * 109.46715 * 180.02562 * 19 18 16 37 37 H 1.08995 * 109.46651 * 299.99889 * 19 18 16 38 38 H 1.08999 * 109.47067 * 60.00126 * 20 19 18 39 39 H 1.09002 * 109.46847 * 180.02562 * 20 19 18 40 40 H 1.08995 * 109.47050 * 299.99938 * 24 16 14 41 41 H 1.08999 * 109.47067 * 59.99963 * 24 16 14 42 42 H 1.09000 * 109.49972 * 58.58634 * 25 12 11 43 43 H 1.09002 * 109.50246 * 178.68733 * 25 12 11 44 44 H 1.09004 * 109.58573 * 246.19906 * 26 9 7 45 45 H 1.08995 * 109.59196 * 6.62281 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4361 2.0820 -1.3983 5 1 1.4799 2.6342 0.7607 6 1 3.5772 1.4232 0.6375 7 6 2.0103 -1.2021 -0.0005 8 1 1.5222 -2.1075 0.3288 9 7 3.3137 -1.2400 -0.4186 10 6 3.8177 -0.2581 -1.3885 11 6 4.4628 -1.0073 -2.5588 12 6 5.5294 -1.9640 -2.0208 13 7 6.1715 -2.6581 -3.1398 14 6 7.4239 -3.1375 -3.0060 15 8 8.0176 -2.9988 -1.9574 16 6 8.0867 -3.8461 -4.1590 17 1 7.4980 -4.7210 -4.4347 18 6 9.4924 -4.2874 -3.7464 19 6 10.1656 -5.0063 -4.9173 20 6 10.2597 -4.0562 -6.1129 21 6 8.8540 -3.6149 -6.5255 22 9 8.9400 -2.7467 -7.6191 23 9 8.0981 -4.7375 -6.8803 24 6 8.1803 -2.8967 -5.3552 25 6 4.8755 -2.9897 -1.0922 26 6 4.2350 -2.2630 0.0946 27 1 -0.4849 0.8401 0.0004 28 1 4.5599 0.3806 -0.9099 29 1 2.9910 0.3504 -1.7555 30 1 4.9254 -0.2916 -3.2383 31 1 3.7006 -1.5753 -3.0923 32 1 6.2783 -1.3982 -1.4666 33 1 5.6967 -2.7691 -3.9783 34 1 10.0814 -3.4128 -3.4704 35 1 9.4254 -4.9639 -2.8943 36 1 11.1668 -5.3210 -4.6232 37 1 9.5766 -5.8808 -5.1936 38 1 10.8486 -3.1817 -5.8366 39 1 10.7389 -4.5686 -6.9472 40 1 7.1788 -2.5827 -5.6490 41 1 8.7691 -2.0218 -5.0794 42 1 4.1091 -3.5390 -1.6390 43 1 5.6319 -3.6849 -0.7278 44 1 5.0114 -1.7878 0.6942 45 1 3.6839 -2.9773 0.7062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312138480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:38 Heat of formation + Delta-G solvation = -135.917694 kcal Electronic energy + Delta-G solvation = -27550.530137 eV Core-core repulsion = 23431.205716 eV Total energy + Delta-G solvation = -4119.324421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.32978 -47.31057 -40.33224 -38.15213 -37.05590 -34.66091 -32.54047 -31.67068 -30.46730 -30.31157 -29.89730 -25.44438 -24.12808 -23.16302 -22.90890 -21.85046 -20.81029 -20.13867 -19.57432 -18.02642 -17.26211 -16.91086 -16.74998 -16.53070 -15.97832 -15.55416 -15.06103 -14.56254 -14.43960 -14.19356 -14.15316 -13.83095 -13.78971 -13.62972 -13.35666 -13.12963 -13.04314 -12.91587 -12.67229 -12.46137 -12.13563 -12.02320 -11.80734 -11.69584 -11.27675 -11.16849 -11.03939 -10.85926 -10.84574 -10.59510 -10.31936 -10.18080 -9.91245 -9.66597 -9.48623 -8.88392 -8.65585 -7.02010 -5.97290 -3.33398 2.52140 3.07011 3.28984 3.38113 3.47219 3.50189 3.65327 3.87061 3.92523 4.41398 4.47261 4.50474 4.56397 4.69481 4.80170 4.89679 4.93357 4.97315 5.15021 5.22806 5.29655 5.35881 5.37114 5.39558 5.44356 5.58247 5.62583 5.76612 5.78400 5.92432 6.00218 6.05500 6.13126 6.28498 6.35618 6.54586 6.60840 6.62222 6.68642 6.88620 7.51514 7.93431 8.19507 8.30607 8.91256 9.69335 10.06722 11.18689 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.025643 B = 0.002905 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.645022 B = 9634.741293 C =10055.752799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.141 4.141 12 C 0.150 3.850 13 N -0.723 5.723 14 C 0.518 3.482 15 O -0.536 6.536 16 C -0.107 4.107 17 H 0.106 0.894 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.159 4.159 21 C 0.292 3.708 22 F -0.201 7.201 23 F -0.198 7.198 24 C -0.152 4.152 25 C -0.141 4.141 26 C 0.151 3.849 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.397 0.603 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.025 0.975 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.841 -8.759 -13.784 26.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.181 4.181 12 C 0.046 3.954 13 N -0.373 5.373 14 C 0.303 3.697 15 O -0.412 6.412 16 C -0.128 4.128 17 H 0.124 0.876 18 C -0.142 4.142 19 C -0.157 4.157 20 C -0.197 4.197 21 C 0.256 3.744 22 F -0.181 7.181 23 F -0.179 7.179 24 C -0.190 4.190 25 C -0.181 4.181 26 C 0.024 3.976 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.231 0.769 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.070 -8.569 -13.016 26.207 hybrid contribution -0.020 0.956 -0.722 1.198 sum 21.050 -7.614 -13.737 26.264 Atomic orbital electron populations 1.69838 1.05730 1.26575 1.52972 1.25288 0.95237 0.97573 0.99503 0.86971 0.80129 0.84689 0.77014 1.21626 1.23085 1.19493 1.18932 0.84906 0.94809 1.40171 0.89622 1.44402 1.08712 1.33319 1.46559 1.21306 0.97298 0.92043 0.89051 1.22352 0.97511 0.98420 0.99793 1.21017 0.94350 0.93160 0.86833 1.46336 1.15438 1.58267 1.17236 1.20307 0.81624 0.78837 0.88944 1.90716 1.64100 1.57214 1.29203 1.21321 0.99125 0.99099 0.93269 0.87570 1.21440 0.93191 1.01625 0.97966 1.21552 1.02340 0.98127 0.93678 1.22561 0.93786 1.02574 1.00823 1.21014 0.92646 0.77557 0.83212 1.93024 1.97013 1.70450 1.57657 1.93008 1.78332 1.53499 1.93048 1.22504 1.03713 0.99618 0.93154 1.22379 0.99388 0.97975 0.98372 1.20897 0.92325 0.91350 0.93010 0.92742 0.95475 0.90481 0.92267 0.91107 0.89877 0.76915 0.90524 0.90015 0.89973 0.90725 0.88592 0.89358 0.88842 0.88062 0.91809 0.92270 0.95703 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.64 13.97 55.49 0.78 -26.87 16 2 C 0.02 0.66 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.15 24.34 -169.99 -4.14 18.01 16 4 H -0.29 -6.92 6.62 56.52 0.37 -6.55 16 5 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.27 -6.70 6.63 56.52 0.37 -6.32 16 7 C -0.26 -7.19 10.03 -15.06 -0.15 -7.34 16 8 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 9 N -0.61 -14.20 2.77 -172.32 -0.48 -14.68 16 10 C 0.13 2.74 4.20 -3.71 -0.02 2.72 16 11 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 12 C 0.15 2.32 2.42 -67.89 -0.16 2.16 16 13 N -0.72 -8.76 4.97 -53.77 -0.27 -9.02 16 14 C 0.52 6.34 7.12 -10.99 -0.08 6.26 16 15 O -0.54 -8.59 15.64 5.55 0.09 -8.51 16 16 C -0.11 -0.91 2.40 -91.77 -0.22 -1.13 16 17 H 0.11 0.84 7.80 -51.93 -0.41 0.43 16 18 C -0.10 -0.82 4.49 -26.73 -0.12 -0.94 16 19 C -0.12 -0.70 5.80 -26.73 -0.16 -0.85 16 20 C -0.16 -0.95 5.45 -26.73 -0.15 -1.10 16 21 C 0.29 2.33 2.10 -26.75 -0.06 2.28 16 22 F -0.20 -1.94 17.06 2.25 0.04 -1.90 16 23 F -0.20 -1.86 16.02 2.25 0.04 -1.82 16 24 C -0.15 -1.16 4.63 -26.75 -0.12 -1.28 16 25 C -0.14 -2.36 5.65 -26.61 -0.15 -2.51 16 26 C 0.15 2.99 6.52 -3.71 -0.02 2.97 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 29 H 0.08 1.78 4.49 -51.93 -0.23 1.55 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.43 7.57 -51.93 -0.39 1.04 16 33 H 0.40 3.85 8.02 -40.82 -0.33 3.53 16 34 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.08 0.71 8.10 -51.92 -0.42 0.29 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.45 7.80 -51.93 -0.41 0.04 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.67 7.56 -51.93 -0.39 0.28 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -32.26 350.85 -7.50 -39.75 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.19 Total: 0.42 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.64 Total: -0.67 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.03 Total: -50.57 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.07 Total: -3.72 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.26 -7.50 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312138480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.164 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds