Wall clock time and date at job start Tue Mar 31 2020 11:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00060 * 2 1 4 4 H 1.48499 * 109.47286 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46886 * 120.00457 * 3 2 1 6 6 H 1.48503 * 109.46958 * 239.99987 * 3 2 1 7 7 C 1.37873 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00263 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.46334 * 295.06680 * 10 9 7 12 12 C 1.53188 * 109.31820 * 178.61881 * 11 10 9 13 13 N 1.46923 * 108.77469 * 54.63128 * 12 11 10 14 14 C 1.34783 * 120.62642 * 126.37661 * 13 12 11 15 15 O 1.21278 * 119.99666 * 175.33308 * 14 13 12 16 16 C 1.50703 * 120.00044 * 355.32978 * 14 13 12 17 17 H 1.09002 * 109.51936 * 35.21586 * 16 14 13 18 18 C 1.53115 * 109.52107 * 275.08346 * 16 14 13 19 19 C 1.53045 * 109.27282 * 182.50360 * 18 16 14 20 20 N 1.46841 * 109.57376 * 59.08708 * 19 18 16 21 21 C 1.46852 * 111.19878 * 298.28733 * 20 19 18 22 22 C 1.53034 * 109.51984 * 61.74298 * 21 20 19 23 23 F 1.39898 * 109.50184 * 180.87832 * 22 21 20 24 24 F 1.39908 * 109.53637 * 60.78450 * 22 21 20 25 25 C 1.46917 * 118.74346 * 306.39380 * 13 12 11 26 26 C 1.53045 * 109.46208 * 174.99817 * 10 9 7 27 27 H 0.97002 * 119.99455 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46669 * 300.00454 * 9 7 2 29 29 H 1.08999 * 109.47136 * 59.99999 * 9 7 2 30 30 H 1.09002 * 109.46417 * 55.02865 * 10 9 7 31 31 H 1.09001 * 109.49566 * 298.57042 * 11 10 9 32 32 H 1.09003 * 109.49460 * 58.66152 * 11 10 9 33 33 H 1.09009 * 109.57982 * 294.84675 * 12 11 10 34 34 H 1.08998 * 109.59112 * 174.42381 * 12 11 10 35 35 H 1.08996 * 109.50795 * 302.38274 * 18 16 14 36 36 H 1.09004 * 109.50245 * 62.50154 * 18 16 14 37 37 H 1.08999 * 109.40849 * 299.06743 * 19 18 16 38 38 H 1.09003 * 109.45259 * 179.12901 * 19 18 16 39 39 H 1.00905 * 111.00033 * 174.19616 * 20 19 18 40 40 H 1.08993 * 109.46048 * 301.72556 * 21 20 19 41 41 H 1.09000 * 109.46260 * 181.75750 * 21 20 19 42 42 H 1.09005 * 109.59009 * 293.82399 * 25 13 12 43 43 H 1.08999 * 109.70513 * 173.46713 * 25 13 12 44 44 H 1.09000 * 109.49728 * 301.34068 * 26 10 9 45 45 H 1.09005 * 109.49467 * 61.42979 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 3.0412 -3.6524 -1.3076 12 6 4.0591 -4.7970 -1.2894 13 7 3.3502 -6.0562 -1.0240 14 6 3.4913 -7.1111 -1.8508 15 8 2.9692 -8.1708 -1.5764 16 6 4.2980 -6.9740 -3.1164 17 1 5.1386 -6.3025 -2.9415 18 6 3.4121 -6.4060 -4.2287 19 6 4.2191 -6.3276 -5.5267 20 7 4.6964 -7.6677 -5.8910 21 6 5.5876 -8.2127 -4.8589 22 6 4.8210 -8.3488 -3.5413 23 9 5.6757 -8.8492 -2.5533 24 9 3.7442 -9.2251 -3.7149 25 6 2.4842 -6.1434 0.1596 26 6 1.4838 -4.9838 0.1253 27 1 -0.4849 0.8401 0.0004 28 1 0.6246 -2.5570 0.8897 29 1 0.6240 -2.5567 -0.8903 30 1 2.9289 -3.5554 0.8416 31 1 2.3607 -3.7840 -2.1489 32 1 3.5645 -2.7015 -1.4077 33 1 4.7947 -4.6193 -0.5048 34 1 4.5598 -4.8562 -2.2558 35 1 2.5503 -7.0570 -4.3758 36 1 3.0721 -5.4087 -3.9496 37 1 5.0723 -5.6647 -5.3833 38 1 3.5865 -5.9381 -6.3245 39 1 5.1505 -7.6573 -6.7920 40 1 6.4344 -7.5410 -4.7187 41 1 5.9491 -9.1923 -5.1716 42 1 3.0912 -6.0756 1.0625 43 1 1.9456 -7.0910 0.1519 44 1 0.8988 -4.9805 1.0449 45 1 0.8180 -5.1028 -0.7295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335419112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:01 Heat of formation + Delta-G solvation = -146.967209 kcal Electronic energy + Delta-G solvation = -28220.315005 eV Core-core repulsion = 24100.511441 eV Total energy + Delta-G solvation = -4119.803564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.95669 -46.89987 -40.32045 -38.15224 -37.28098 -34.11782 -32.97905 -32.00892 -30.72809 -30.42434 -28.13534 -25.72944 -24.36091 -23.42561 -22.94207 -21.88867 -20.64547 -19.86844 -18.77305 -17.87551 -17.48920 -16.85263 -16.33581 -16.27464 -15.77735 -15.56383 -15.17083 -14.63107 -14.54604 -14.38492 -13.87687 -13.76428 -13.58261 -13.39006 -13.21730 -13.15653 -12.90838 -12.70248 -12.58941 -12.23133 -12.19266 -11.94326 -11.81620 -11.37120 -11.24028 -11.05657 -10.93138 -10.74762 -10.70641 -10.50533 -10.19017 -9.79802 -9.60311 -9.31768 -9.03716 -9.03062 -8.42722 -8.39124 -6.04483 -4.07039 2.54950 2.91752 3.27674 3.33680 3.34547 3.36426 3.65089 3.72182 4.09568 4.24603 4.40541 4.47957 4.61777 4.76117 4.90750 5.00615 5.04559 5.12444 5.26859 5.29593 5.32513 5.34371 5.39998 5.46833 5.54349 5.60834 5.69000 5.87293 5.93703 6.02012 6.30376 6.32147 6.35976 6.45448 6.60026 6.76277 6.89006 6.92016 7.04405 7.45495 7.61618 7.75985 7.94826 8.16532 8.36660 8.99282 9.56991 11.06667 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.003309 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.396058 B = 8460.823519 C = 9156.364111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.118 4.118 12 C 0.099 3.901 13 N -0.601 5.601 14 C 0.520 3.480 15 O -0.529 6.529 16 C -0.155 4.155 17 H 0.116 0.884 18 C -0.109 4.109 19 C 0.054 3.946 20 N -0.681 5.681 21 C 0.022 3.978 22 C 0.314 3.686 23 F -0.197 7.197 24 F -0.172 7.172 25 C 0.113 3.887 26 C -0.129 4.129 27 H 0.261 0.739 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.357 0.643 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.137 -13.264 -10.643 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.156 4.156 12 C -0.023 4.023 13 N -0.334 5.334 14 C 0.306 3.694 15 O -0.406 6.406 16 C -0.177 4.177 17 H 0.134 0.866 18 C -0.147 4.147 19 C -0.075 4.075 20 N -0.314 5.314 21 C -0.109 4.109 22 C 0.277 3.723 23 F -0.178 7.178 24 F -0.153 7.153 25 C -0.009 4.009 26 C -0.167 4.167 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.177 0.823 40 H 0.081 0.919 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.132 -14.057 -10.220 20.640 hybrid contribution 1.282 1.567 0.031 2.025 sum 12.414 -12.491 -10.190 20.346 Atomic orbital electron populations 1.69954 1.06060 1.26699 1.50671 1.25018 0.94791 0.99165 0.95412 0.86711 0.79619 0.83416 0.78545 1.21343 1.20298 1.20298 1.21188 0.92848 0.90961 1.50671 0.92678 1.19115 0.93579 0.90946 0.97250 1.21194 0.98016 0.94714 0.96022 1.21911 0.97475 0.97006 0.99241 1.22039 0.95414 0.83832 1.01023 1.48104 1.46620 1.12704 1.25971 1.19980 0.81401 0.83989 0.84030 1.90748 1.48586 1.26874 1.74358 1.22518 1.01571 0.97119 0.96468 0.86601 1.21599 0.98543 1.02958 0.91581 1.22061 0.98743 0.88760 0.97932 1.60066 1.41937 1.24545 1.04850 1.22789 0.94048 1.03057 0.90985 1.20502 0.79214 0.86100 0.86503 1.93018 1.71181 1.89196 1.64434 1.93074 1.55974 1.70727 1.95497 1.21689 0.92504 1.00381 0.86328 1.22036 0.97596 0.94732 1.02373 0.92945 0.96573 0.96613 0.92298 0.92190 0.89590 0.91245 0.90661 0.89219 0.88866 0.94053 0.88946 0.82323 0.91861 0.87999 0.91703 0.89612 0.90996 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.63 8.39 -34.44 -0.29 -13.92 16 8 H 0.06 1.38 7.06 -52.49 -0.37 1.01 16 9 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 10 C -0.08 -1.50 2.10 -90.58 -0.19 -1.69 16 11 C -0.12 -1.88 5.19 -26.61 -0.14 -2.02 16 12 C 0.10 1.26 6.27 -3.71 -0.02 1.24 16 13 N -0.60 -8.69 2.97 -172.77 -0.51 -9.20 16 14 C 0.52 7.93 6.60 -10.98 -0.07 7.86 16 15 O -0.53 -10.03 14.56 5.56 0.08 -9.95 16 16 C -0.15 -1.79 1.40 -91.65 -0.13 -1.92 16 17 H 0.12 1.08 6.29 -51.93 -0.33 0.75 16 18 C -0.11 -1.10 5.14 -26.65 -0.14 -1.24 16 19 C 0.05 0.40 6.55 -3.83 -0.03 0.37 16 20 N -0.68 -5.17 6.78 -113.82 -0.77 -5.94 16 21 C 0.02 0.18 6.04 -3.83 -0.02 0.16 16 22 C 0.31 3.87 1.48 -26.65 -0.04 3.83 16 23 F -0.20 -2.73 16.83 2.25 0.04 -2.69 16 24 F -0.17 -2.69 15.10 2.25 0.03 -2.65 16 25 C 0.11 1.69 6.41 -3.72 -0.02 1.67 16 26 C -0.13 -2.12 5.36 -26.61 -0.14 -2.27 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.45 6.91 -51.93 -0.36 1.09 16 33 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.08 0.76 5.19 -51.93 -0.27 0.49 16 35 H 0.09 1.10 7.92 -51.93 -0.41 0.69 16 36 H 0.09 0.91 7.92 -51.93 -0.41 0.50 16 37 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.36 1.76 8.90 -39.29 -0.35 1.41 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.09 1.35 7.04 -51.93 -0.37 0.98 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -32.65 354.46 -8.60 -41.25 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.07 Total: -0.63 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.45 Total: -5.90 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.55 Total: -40.48 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.07 Total: -5.35 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.65 -8.60 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335419112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.719 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds