Wall clock time and date at job start Tue Mar 31 2020 10:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00288 * 2 1 4 4 H 1.48495 * 109.46902 * 270.10315 * 3 2 1 5 5 H 1.48491 * 109.46863 * 30.10691 * 3 2 1 6 6 H 1.48502 * 109.47104 * 150.10391 * 3 2 1 7 7 C 1.37886 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00037 * 359.21282 * 7 2 1 9 9 C 1.50695 * 119.99784 * 179.21698 * 7 2 1 10 10 C 1.52999 * 115.55339 * 86.84107 * 9 7 2 11 11 N 1.46502 * 109.46829 * 64.86413 * 10 9 7 12 12 C 1.34776 * 120.00222 * 184.67465 * 11 10 9 13 13 O 1.21590 * 119.99869 * 5.19256 * 12 11 10 14 14 N 1.34774 * 120.00329 * 185.19570 * 12 11 10 15 15 C 1.46499 * 119.99889 * 175.02696 * 14 12 11 16 16 C 1.53008 * 109.46968 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.46806 * 304.99851 * 16 15 14 18 18 C 1.52992 * 109.47108 * 65.00006 * 16 15 14 19 19 C 1.52999 * 109.47192 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47209 * 300.00247 * 19 18 16 21 21 C 1.52992 * 109.47245 * 59.99786 * 20 19 18 22 22 F 1.39898 * 109.47443 * 60.00247 * 21 20 19 23 23 F 1.39904 * 109.47504 * 180.02562 * 21 20 19 24 24 C 1.52993 * 109.46875 * 185.00106 * 16 15 14 25 25 C 1.52998 * 117.49881 * 232.51405 * 9 7 2 26 26 C 1.53005 * 117.49925 * 301.16932 * 9 7 2 27 27 H 0.97002 * 119.99539 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47434 * 304.86471 * 10 9 7 29 29 H 1.09000 * 109.47547 * 184.85925 * 10 9 7 30 30 H 0.96997 * 120.00391 * 4.67594 * 11 10 9 31 31 H 0.96996 * 119.99968 * 355.02980 * 14 12 11 32 32 H 1.08997 * 109.47084 * 60.00538 * 15 14 12 33 33 H 1.09002 * 109.47648 * 299.99954 * 15 14 12 34 34 H 1.08997 * 109.47553 * 300.00241 * 18 16 15 35 35 H 1.09001 * 109.47413 * 60.00217 * 18 16 15 36 36 H 1.08999 * 109.47188 * 179.97438 * 19 18 16 37 37 H 1.09003 * 109.46775 * 60.00393 * 19 18 16 38 38 H 1.09001 * 109.46944 * 299.99462 * 20 19 18 39 39 H 1.08999 * 109.47100 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.47377 * 60.00017 * 24 16 15 41 41 H 1.09003 * 109.47622 * 299.99825 * 24 16 15 42 42 H 1.09004 * 117.50096 * 215.00629 * 25 9 7 43 43 H 1.09005 * 117.49991 * 0.02562 * 25 9 7 44 44 H 1.09000 * 117.49652 * 359.97438 * 26 9 7 45 45 H 1.09007 * 117.49660 * 144.97496 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4945 2.0476 -1.4000 5 1 1.4478 2.6519 0.7023 6 1 3.5479 1.4394 0.6978 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0138 9 6 3.5113 -1.1943 -0.0173 10 6 4.1876 -1.1082 1.3524 11 7 3.8779 -2.3130 2.1264 12 6 4.2904 -2.4170 3.4052 13 8 4.8364 -1.4749 3.9464 14 7 4.0979 -3.5651 4.0842 15 6 4.6420 -3.7168 5.4360 16 6 4.2846 -5.1027 5.9770 17 1 3.2053 -5.2460 5.9243 18 6 4.9830 -6.1737 5.1371 19 6 4.6262 -7.5595 5.6785 20 6 5.0857 -7.6725 7.1334 21 6 4.3872 -6.6014 7.9734 22 9 3.0021 -6.7858 7.9063 23 9 4.8078 -6.7042 9.3038 24 6 4.7436 -5.2159 7.4321 25 6 4.2050 -2.0280 -1.0964 26 6 4.2040 -0.5004 -1.1919 27 1 -0.4849 0.8401 -0.0004 28 1 3.8206 -0.2304 1.8843 29 1 5.2666 -1.0285 1.2206 30 1 3.3760 -3.0358 1.7185 31 1 3.5991 -4.2910 3.6779 32 1 4.2176 -2.9519 6.0863 33 1 5.7261 -3.6074 5.4057 34 1 4.6561 -6.0930 4.1004 35 1 6.0623 -6.0304 5.1898 36 1 5.1235 -8.3226 5.0797 37 1 3.5470 -7.7032 5.6260 38 1 6.1649 -7.5288 7.1858 39 1 4.8319 -8.6599 7.5190 40 1 4.2460 -4.4528 8.0305 41 1 5.8229 -5.0725 7.4849 42 1 5.1431 -2.5154 -0.8305 43 1 3.5714 -2.5762 -1.7938 44 1 3.5697 -0.0442 -1.9520 45 1 5.1412 0.0178 -0.9887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336927306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:42 Heat of formation + Delta-G solvation = -128.802304 kcal Electronic energy + Delta-G solvation = -26762.888655 eV Core-core repulsion = 22643.872780 eV Total energy + Delta-G solvation = -4119.015875 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.25633 -47.24306 -39.73774 -38.43606 -37.10319 -34.55181 -33.40686 -32.12961 -31.68787 -30.23759 -27.12271 -25.84893 -24.71465 -23.25396 -21.93397 -21.71346 -20.53426 -20.24051 -19.28958 -17.97637 -17.37446 -17.13298 -16.67969 -16.42171 -15.66140 -15.50746 -15.19589 -14.87575 -14.58222 -14.23210 -14.07592 -13.97216 -13.66911 -13.54528 -13.27420 -13.08587 -12.98975 -12.70027 -12.64235 -12.48700 -12.36174 -11.99660 -11.83194 -11.46697 -11.16055 -11.12531 -11.01988 -10.76698 -10.51724 -10.50396 -10.18092 -9.84945 -9.60191 -9.19362 -8.93657 -8.64676 -8.59373 -8.15551 -6.15667 -4.20230 3.01829 3.29479 3.40011 3.44077 3.46317 3.67419 3.71282 3.93994 3.97446 4.40696 4.43388 4.45963 4.62070 4.70839 4.78294 4.82067 4.96314 5.02324 5.11312 5.14158 5.30202 5.36649 5.42353 5.45767 5.59715 5.68082 5.69788 5.73947 5.83847 5.98457 6.01394 6.06242 6.25113 6.40573 6.48728 6.67305 6.69277 7.00340 7.08113 7.17897 7.39607 7.67915 8.40728 8.52695 8.83958 9.07923 9.47573 10.95704 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.002567 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.630036 B =10905.600685 C =11094.416271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.256 1.256 7 C -0.490 4.490 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.174 3.826 11 N -0.719 5.719 12 C 0.700 3.300 13 O -0.603 6.603 14 N -0.752 5.752 15 C 0.149 3.851 16 C -0.099 4.099 17 H 0.089 0.911 18 C -0.121 4.121 19 C -0.120 4.120 20 C -0.158 4.158 21 C 0.290 3.710 22 F -0.198 7.198 23 F -0.204 7.204 24 C -0.151 4.151 25 C -0.179 4.179 26 C -0.193 4.193 27 H 0.265 0.735 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.399 0.601 31 H 0.395 0.605 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.212 -15.922 12.104 22.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.123 4.123 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.180 1.180 7 C -0.527 4.527 8 H 0.095 0.905 9 C -0.016 4.016 10 C 0.050 3.950 11 N -0.372 5.372 12 C 0.400 3.600 13 O -0.483 6.483 14 N -0.409 5.409 15 C 0.024 3.976 16 C -0.118 4.118 17 H 0.108 0.892 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.196 4.196 21 C 0.254 3.746 22 F -0.179 7.179 23 F -0.185 7.185 24 C -0.190 4.190 25 C -0.216 4.216 26 C -0.231 4.231 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.233 0.767 31 H 0.229 0.771 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.553 -14.919 12.614 22.697 hybrid contribution -0.281 0.280 -0.211 0.450 sum 11.271 -14.639 12.403 22.253 Atomic orbital electron populations 1.69884 1.06404 1.27270 1.49692 1.24968 0.94590 0.99184 0.93583 0.86852 0.80790 0.83254 0.78401 1.20421 1.22052 1.18050 1.20169 0.86047 0.94463 1.52013 0.90475 1.19628 0.95327 1.00658 0.86020 1.21014 0.96286 0.86201 0.91472 1.44977 1.59249 1.22270 1.10681 1.15982 0.79762 0.82654 0.81583 1.90877 1.50388 1.38002 1.69022 1.45029 1.61462 1.17118 1.17298 1.21035 0.98786 0.94967 0.82802 1.21366 1.02047 0.95314 0.93089 0.89231 1.21707 1.01068 0.93200 0.99841 1.21527 1.02535 0.97999 0.93667 1.22532 1.02012 0.98537 0.96525 1.21061 0.76512 0.98237 0.78820 1.93006 1.32145 1.96543 1.96249 1.93012 1.89916 1.97332 1.38192 1.22463 1.04518 0.94656 0.97339 1.22838 1.01047 0.92955 1.04757 1.22955 1.01442 0.95061 1.03624 0.92488 0.91693 0.94309 0.76715 0.77123 0.91492 0.91685 0.90540 0.91047 0.90312 0.90710 0.88758 0.89592 0.88956 0.88361 0.90910 0.89453 0.89142 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.51 24.84 -169.99 -4.22 17.29 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.05 5.79 56.52 0.33 -5.72 16 7 C -0.49 -12.80 9.29 -34.44 -0.32 -13.12 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C -0.02 -0.33 0.82 -155.66 -0.13 -0.45 16 10 C 0.17 3.67 5.16 -4.04 -0.02 3.65 16 11 N -0.72 -13.22 5.46 -65.22 -0.36 -13.58 16 12 C 0.70 12.65 8.55 -86.92 -0.74 11.91 16 13 O -0.60 -13.31 16.33 5.29 0.09 -13.22 16 14 N -0.75 -9.67 5.29 -65.22 -0.34 -10.02 16 15 C 0.15 1.61 5.07 -4.04 -0.02 1.59 16 16 C -0.10 -0.77 2.10 -90.62 -0.19 -0.96 16 17 H 0.09 0.76 7.80 -51.93 -0.41 0.35 16 18 C -0.12 -0.77 5.08 -26.74 -0.14 -0.91 16 19 C -0.12 -0.69 5.80 -26.73 -0.16 -0.84 16 20 C -0.16 -0.95 5.45 -26.74 -0.15 -1.10 16 21 C 0.29 2.38 2.10 -26.76 -0.06 2.32 16 22 F -0.20 -2.03 16.03 2.25 0.04 -1.99 16 23 F -0.20 -2.00 17.06 2.25 0.04 -1.96 16 24 C -0.15 -1.11 4.73 -26.76 -0.13 -1.24 16 25 C -0.18 -3.34 9.96 -26.70 -0.27 -3.61 16 26 C -0.19 -3.91 7.60 -26.69 -0.20 -4.11 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.06 1.55 6.64 -51.93 -0.34 1.21 16 29 H 0.04 0.78 8.09 -51.93 -0.42 0.36 16 30 H 0.40 6.65 8.46 -40.82 -0.35 6.30 16 31 H 0.39 4.09 7.68 -40.82 -0.31 3.77 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.50 7.18 -51.93 -0.37 0.13 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.48 7.80 -51.93 -0.41 0.08 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 44 H 0.09 1.93 7.25 -51.93 -0.38 1.55 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 362.99 15.07 5.47 5.47 Total: -1.00 -32.28 362.99 -8.39 -40.68 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.27 Total: 7.87 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.61 Total: -4.75 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.07 Total: -49.38 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.07 Total: -3.96 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.22 Total: 17.29 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.28 -8.39 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336927306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.127 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds