Wall clock time and date at job start Tue Mar 31 2020 11:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46859 * 2 1 4 4 C 1.52998 * 109.47640 * 239.99869 * 2 1 3 5 5 C 1.50709 * 109.46914 * 59.99904 * 4 2 1 6 6 H 1.07998 * 119.99785 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99898 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99771 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00075 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47117 * 59.99515 * 9 7 5 11 11 H 1.48498 * 109.47178 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46918 * 299.99709 * 9 7 5 13 13 C 1.53002 * 109.46998 * 119.99712 * 2 1 3 14 14 N 1.46503 * 109.47184 * 300.00389 * 13 2 1 15 15 C 1.37286 * 120.00076 * 179.97438 * 14 13 2 16 16 C 1.37994 * 120.51256 * 0.28012 * 15 14 13 17 17 C 1.39850 * 119.25282 * 180.26818 * 16 15 14 18 18 N 1.39182 * 119.87623 * 179.72898 * 17 16 15 19 19 C 1.35992 * 126.10659 * 179.69995 * 18 17 16 20 20 C 1.35191 * 107.59862 * 179.74406 * 19 18 17 21 21 C 1.40053 * 107.97220 * 0.39669 * 20 19 18 22 22 N 1.30753 * 108.38588 * 359.59333 * 21 20 19 23 23 N 1.32430 * 120.24326 * 359.44407 * 17 16 15 24 24 C 1.33872 * 121.08204 * 0.28287 * 23 17 16 25 25 N 1.31568 * 119.62818 * 180.02562 * 24 23 17 26 26 N 1.36964 * 120.51523 * 179.97438 * 15 14 13 27 27 H 0.97001 * 120.15006 * 0.02680 * 26 15 14 28 28 H 1.08997 * 109.47676 * 300.00142 * 1 2 3 29 29 H 1.09002 * 109.47203 * 60.00023 * 1 2 3 30 30 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47101 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47392 * 299.99224 * 3 2 1 33 33 H 1.09001 * 109.47305 * 60.00215 * 3 2 1 34 34 H 1.08993 * 109.47672 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.46843 * 300.00738 * 4 2 1 36 36 H 0.96999 * 119.99551 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47171 * 180.02562 * 13 2 1 38 38 H 1.08997 * 109.47250 * 60.00030 * 13 2 1 39 39 H 0.97000 * 120.00123 * 359.97438 * 14 13 2 40 40 H 1.08008 * 120.37713 * 359.97438 * 16 15 14 41 41 H 1.08003 * 126.20363 * 0.02811 * 19 18 17 42 42 H 1.08000 * 126.01772 * 180.23221 * 20 19 18 43 43 H 1.08002 * 125.81115 * 179.86594 * 21 20 19 44 44 H 0.97000 * 120.00123 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8705 -0.4822 -3.7320 8 7 2.6267 -1.5515 -3.8525 9 14 1.2485 0.3987 -5.2572 10 1 1.7444 1.7985 -5.2572 11 1 1.7435 -0.3014 -6.4696 12 1 -0.2365 0.3997 -5.2572 13 6 2.0400 -0.7212 1.2493 14 7 1.5515 -0.0306 2.4455 15 6 1.8827 -0.4999 3.6924 16 6 2.6797 -1.6178 3.8314 17 6 2.9961 -2.0763 5.1141 18 7 3.7943 -3.2059 5.2693 19 6 4.1833 -3.7562 6.4505 20 6 4.9414 -4.8390 6.1670 21 6 5.0284 -4.9528 4.7738 22 7 4.3404 -3.9793 4.2367 23 7 2.5437 -1.4364 6.1816 24 6 1.7743 -0.3476 6.0603 25 7 1.3410 0.2662 7.1403 26 7 1.4323 0.1379 4.8177 27 1 0.8744 0.9275 4.7399 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2494 35 1 1.6767 -1.7489 -1.2492 36 1 2.8611 -1.8828 -4.7335 37 1 3.1300 -0.7208 1.2496 38 1 1.6766 -1.7488 1.2494 39 1 0.9941 0.7583 2.3564 40 1 3.0511 -2.1356 2.9593 41 1 3.9286 -3.3963 7.4365 42 1 5.4013 -5.4986 6.8880 43 1 5.5681 -5.7174 4.2348 44 1 1.5789 -0.0708 8.0182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340886992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:22 Heat of formation + Delta-G solvation = 145.309168 kcal Electronic energy + Delta-G solvation = -25797.470249 eV Core-core repulsion = 22173.322677 eV Total energy + Delta-G solvation = -3624.147572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.72877 -40.77758 -38.32045 -35.85290 -35.13170 -32.97121 -32.00890 -31.34245 -30.53795 -28.89937 -27.25961 -26.73813 -26.59467 -24.70303 -23.44103 -22.17246 -21.18805 -21.05421 -19.31762 -18.39144 -18.18242 -17.87033 -16.51430 -15.93916 -15.93629 -15.54814 -15.04579 -14.94437 -14.70389 -14.53900 -14.28290 -13.78524 -13.58644 -13.11660 -12.95484 -12.95214 -12.84746 -12.18652 -11.91495 -11.54292 -11.17129 -11.11420 -11.02394 -10.99330 -10.78348 -10.64629 -10.42175 -10.10868 -10.07444 -9.72596 -9.65466 -9.42577 -9.14348 -9.11608 -8.75341 -8.47233 -7.52593 -6.11580 -4.13797 0.47706 1.62220 1.90199 2.14732 2.17654 2.59228 3.24389 3.24460 3.30650 3.31769 3.79226 4.24344 4.35436 4.48755 4.78345 4.90892 5.07418 5.21218 5.22428 5.30851 5.32959 5.38816 5.50054 5.55809 5.71536 5.74905 5.86711 5.87808 5.92396 6.09764 6.23339 6.32325 6.36852 6.42038 6.49579 6.78979 6.84148 6.86674 6.90399 7.03135 7.24771 7.34910 7.46945 7.57394 7.85327 7.94034 8.25672 8.45300 8.90138 9.50285 10.99623 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.002989 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.981660 B = 9366.099141 C =10956.717170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 C -0.130 4.130 4 C 0.038 3.962 5 C -0.516 4.516 6 H 0.059 0.941 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.127 3.873 14 N -0.696 5.696 15 C 0.517 3.483 16 C -0.385 4.385 17 C 0.528 3.472 18 N -0.328 5.328 19 C 0.083 3.917 20 C -0.264 4.264 21 C 0.066 3.934 22 N -0.270 5.270 23 N -0.636 5.636 24 C 0.590 3.410 25 N -0.785 5.785 26 N -0.638 5.638 27 H 0.420 0.580 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.408 0.592 40 H 0.162 0.838 41 H 0.183 0.817 42 H 0.156 0.844 43 H 0.195 0.805 44 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 -2.287 16.941 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.072 4.072 3 C -0.187 4.187 4 C 0.000 4.000 5 C -0.555 4.555 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.323 5.323 15 C 0.287 3.713 16 C -0.422 4.422 17 C 0.279 3.721 18 N -0.107 5.107 19 C -0.058 4.058 20 C -0.293 4.293 21 C -0.124 4.124 22 N -0.087 5.087 23 N -0.374 5.374 24 C 0.220 3.780 25 N -0.427 5.427 26 N -0.267 5.267 27 H 0.258 0.742 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.246 0.754 40 H 0.179 0.821 41 H 0.200 0.800 42 H 0.174 0.826 43 H 0.211 0.789 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.839 -1.198 16.646 16.710 hybrid contribution -0.077 0.100 -0.622 0.635 sum 0.762 -1.099 16.023 16.079 Atomic orbital electron populations 1.21797 0.94982 1.01473 1.00461 1.20952 0.95688 0.96001 0.94530 1.21799 1.00798 0.95653 1.00459 1.19089 0.96489 0.95260 0.89131 1.21093 1.31679 1.12248 0.90442 0.92308 1.24994 0.95173 0.95019 0.99109 1.69940 1.36570 1.22858 1.23767 0.86704 0.79172 0.79787 0.82615 1.20297 1.21302 1.20293 1.22089 0.99607 0.96428 0.81421 1.45016 1.53185 1.31881 1.02182 1.17710 0.85891 0.87488 0.80199 1.20106 1.18830 1.05080 0.98231 1.17824 0.82612 0.81499 0.90122 1.45784 1.38746 1.21027 1.05130 1.22982 0.96470 0.94297 0.92002 1.21724 1.09000 1.02284 0.96258 1.24290 0.97138 0.96871 0.94144 1.77601 1.14467 1.05913 1.10733 1.69176 1.25021 1.13801 1.29354 1.19311 0.87880 0.85382 0.85404 1.69937 1.36275 1.36279 1.00213 1.42423 1.50213 1.30473 1.03561 0.74166 0.95409 0.91043 0.93037 0.93039 0.91037 0.95416 0.96114 0.96115 0.92832 0.90486 0.90486 0.75405 0.82085 0.80022 0.82591 0.78866 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.05 37.16 0.30 -1.67 16 2 C -0.07 -1.14 0.54 -154.51 -0.08 -1.22 16 3 C -0.13 -1.97 8.05 37.16 0.30 -1.67 16 4 C 0.04 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.52 -12.76 7.65 -34.44 -0.26 -13.02 16 6 H 0.06 1.40 5.68 -52.49 -0.30 1.10 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 9 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 13 C 0.13 1.70 3.78 -4.04 -0.02 1.69 16 14 N -0.70 -7.58 5.06 -60.05 -0.30 -7.88 16 15 C 0.52 6.15 7.74 -153.02 -1.18 4.97 16 16 C -0.39 -5.24 8.92 -39.07 -0.35 -5.59 16 17 C 0.53 7.57 7.57 -154.55 -1.17 6.40 16 18 N -0.33 -4.43 3.79 -12.00 -0.05 -4.47 16 19 C 0.08 0.90 11.10 -16.79 -0.19 0.72 16 20 C -0.26 -2.37 10.80 -39.99 -0.43 -2.81 16 21 C 0.07 0.66 12.02 -17.33 -0.21 0.45 16 22 N -0.27 -3.61 11.85 30.65 0.36 -3.25 16 23 N -0.64 -9.22 9.95 -13.11 -0.13 -9.35 16 24 C 0.59 8.36 8.69 -323.18 -2.81 5.56 16 25 N -0.79 -11.38 14.20 29.70 0.42 -10.96 16 26 N -0.64 -7.38 5.46 -13.02 -0.07 -7.45 16 27 H 0.42 3.92 8.93 -40.82 -0.36 3.56 16 28 H 0.03 0.33 6.86 -51.93 -0.36 -0.03 16 29 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 33 H 0.03 0.33 6.86 -51.93 -0.36 -0.03 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16 38 H 0.08 1.07 7.94 -51.93 -0.41 0.66 16 39 H 0.41 3.79 6.28 -40.82 -0.26 3.54 16 40 H 0.16 2.27 6.38 -52.48 -0.33 1.93 16 41 H 0.18 1.66 8.05 -52.48 -0.42 1.24 16 42 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.19 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.35 4.88 8.90 -40.82 -0.36 4.52 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -30.23 362.88 -10.83 -41.06 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.93 Total: 9.89 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -6.31 Total: -4.03 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: 0.97 Total: -67.65 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.23 -10.83 -41.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340886992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.367 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds