Wall clock time and date at job start Tue Mar 31 2020 11:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46859 * 2 1 4 4 C 1.52998 * 109.47640 * 239.99869 * 2 1 3 5 5 C 1.50709 * 109.46914 * 59.99904 * 4 2 1 6 6 H 1.07998 * 119.99785 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99898 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99771 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00075 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47117 * 59.99515 * 9 7 5 11 11 H 1.48498 * 109.47178 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46918 * 299.99709 * 9 7 5 13 13 C 1.53002 * 109.46998 * 119.99712 * 2 1 3 14 14 N 1.46503 * 109.47184 * 300.00389 * 13 2 1 15 15 C 1.37286 * 120.00076 * 179.97438 * 14 13 2 16 16 C 1.37994 * 120.51256 * 0.28012 * 15 14 13 17 17 C 1.39850 * 119.25282 * 180.26818 * 16 15 14 18 18 N 1.39182 * 119.87623 * 179.72898 * 17 16 15 19 19 C 1.35992 * 126.10659 * 179.69995 * 18 17 16 20 20 C 1.35191 * 107.59862 * 179.74406 * 19 18 17 21 21 C 1.40053 * 107.97220 * 0.39669 * 20 19 18 22 22 N 1.30753 * 108.38588 * 359.59333 * 21 20 19 23 23 N 1.32430 * 120.24326 * 359.44407 * 17 16 15 24 24 C 1.33872 * 121.08204 * 0.28287 * 23 17 16 25 25 N 1.31568 * 119.62818 * 180.02562 * 24 23 17 26 26 N 1.36964 * 120.51523 * 179.97438 * 15 14 13 27 27 H 0.97001 * 120.15006 * 0.02680 * 26 15 14 28 28 H 1.08997 * 109.47676 * 300.00142 * 1 2 3 29 29 H 1.09002 * 109.47203 * 60.00023 * 1 2 3 30 30 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47101 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47392 * 299.99224 * 3 2 1 33 33 H 1.09001 * 109.47305 * 60.00215 * 3 2 1 34 34 H 1.08993 * 109.47672 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.46843 * 300.00738 * 4 2 1 36 36 H 0.96999 * 119.99551 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.47171 * 180.02562 * 13 2 1 38 38 H 1.08997 * 109.47250 * 60.00030 * 13 2 1 39 39 H 0.97000 * 120.00123 * 359.97438 * 14 13 2 40 40 H 1.08008 * 120.37713 * 359.97438 * 16 15 14 41 41 H 1.08003 * 126.20363 * 0.02811 * 19 18 17 42 42 H 1.08000 * 126.01772 * 180.23221 * 20 19 18 43 43 H 1.08002 * 125.81115 * 179.86594 * 21 20 19 44 44 H 0.97000 * 120.00123 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8705 -0.4822 -3.7320 8 7 2.6267 -1.5515 -3.8525 9 14 1.2485 0.3987 -5.2572 10 1 1.7444 1.7985 -5.2572 11 1 1.7435 -0.3014 -6.4696 12 1 -0.2365 0.3997 -5.2572 13 6 2.0400 -0.7212 1.2493 14 7 1.5515 -0.0306 2.4455 15 6 1.8827 -0.4999 3.6924 16 6 2.6797 -1.6178 3.8314 17 6 2.9961 -2.0763 5.1141 18 7 3.7943 -3.2059 5.2693 19 6 4.1833 -3.7562 6.4505 20 6 4.9414 -4.8390 6.1670 21 6 5.0284 -4.9528 4.7738 22 7 4.3404 -3.9793 4.2367 23 7 2.5437 -1.4364 6.1816 24 6 1.7743 -0.3476 6.0603 25 7 1.3410 0.2662 7.1403 26 7 1.4323 0.1379 4.8177 27 1 0.8744 0.9275 4.7399 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7208 -1.2494 35 1 1.6767 -1.7489 -1.2492 36 1 2.8611 -1.8828 -4.7335 37 1 3.1300 -0.7208 1.2496 38 1 1.6766 -1.7488 1.2494 39 1 0.9941 0.7583 2.3564 40 1 3.0511 -2.1356 2.9593 41 1 3.9286 -3.3963 7.4365 42 1 5.4013 -5.4986 6.8880 43 1 5.5681 -5.7174 4.2348 44 1 1.5789 -0.0708 8.0182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340886992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:21 Heat of formation + Delta-G solvation = 129.391949 kcal Electronic energy + Delta-G solvation = -25798.160472 eV Core-core repulsion = 22173.322677 eV Total energy + Delta-G solvation = -3624.837794 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.62532 -41.73441 -39.54237 -37.03858 -36.15874 -34.61841 -33.35332 -32.26653 -31.39049 -29.96279 -28.98866 -27.98527 -27.77682 -25.65912 -25.05776 -23.34272 -22.09112 -21.93797 -20.41263 -19.41223 -19.25366 -18.98106 -18.34286 -17.02246 -16.92317 -16.71031 -16.37093 -16.05496 -15.93013 -15.52765 -15.41285 -14.96218 -14.62153 -14.41391 -14.27003 -14.03387 -13.90371 -13.68301 -13.14630 -12.78128 -12.75960 -12.61848 -12.33140 -12.24417 -12.22880 -12.02767 -11.85314 -11.51450 -11.15231 -11.03377 -10.88187 -10.79627 -10.57482 -10.48854 -10.08832 -9.64582 -8.57605 -8.13371 -6.19886 -0.48321 0.63821 0.95363 1.19920 1.20372 1.43778 1.43864 1.51146 1.85747 2.28391 2.45212 2.75075 3.22050 3.33431 3.59512 3.82912 3.96002 4.04131 4.09116 4.15931 4.23256 4.43608 4.56735 4.64425 4.67408 4.67498 4.73998 4.81856 4.92474 5.06308 5.11056 5.11642 5.23290 5.34761 5.46140 5.52749 5.52838 5.57583 5.59557 5.80324 5.91528 5.94820 6.10011 6.32078 6.34945 6.47231 6.94391 6.95339 7.39821 7.47823 8.98411 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.002989 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.981660 B = 9366.099141 C =10956.717170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.062 4.062 3 C -0.127 4.127 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.069 0.931 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.269 1.269 13 C 0.141 3.859 14 N -0.679 5.679 15 C 0.531 3.469 16 C -0.399 4.399 17 C 0.519 3.481 18 N -0.345 5.345 19 C 0.063 3.937 20 C -0.249 4.249 21 C 0.071 3.929 22 N -0.315 5.315 23 N -0.649 5.649 24 C 0.583 3.417 25 N -0.797 5.797 26 N -0.624 5.624 27 H 0.433 0.567 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.067 0.933 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.259 0.741 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.421 0.579 40 H 0.152 0.848 41 H 0.193 0.807 42 H 0.191 0.809 43 H 0.228 0.772 44 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -1.529 18.131 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.063 4.063 3 C -0.184 4.184 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.087 0.913 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.194 1.194 13 C 0.018 3.982 14 N -0.307 5.307 15 C 0.300 3.700 16 C -0.436 4.436 17 C 0.271 3.729 18 N -0.124 5.124 19 C -0.076 4.076 20 C -0.276 4.276 21 C -0.119 4.119 22 N -0.132 5.132 23 N -0.388 5.388 24 C 0.213 3.787 25 N -0.439 5.439 26 N -0.254 5.254 27 H 0.273 0.727 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.261 0.739 40 H 0.170 0.830 41 H 0.210 0.790 42 H 0.208 0.792 43 H 0.244 0.756 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.282 -0.417 17.842 17.849 hybrid contribution 0.158 -0.232 -0.950 0.991 sum 0.441 -0.649 16.892 16.910 Atomic orbital electron populations 1.21744 0.93788 1.01308 1.01538 1.20704 0.96511 0.96213 0.92873 1.21746 1.00316 0.94779 1.01536 1.18951 0.94683 0.94357 0.91654 1.21565 1.30466 1.12063 0.91246 0.91259 1.25832 0.95718 0.95812 1.02383 1.70083 1.38602 1.24765 1.24104 0.85724 0.78907 0.78820 0.78932 1.19415 1.21815 1.19403 1.21705 0.99268 0.96003 0.81225 1.44654 1.53063 1.31940 1.01057 1.17474 0.85225 0.86913 0.80406 1.20113 1.19678 1.05876 0.97916 1.18006 0.82747 0.81947 0.90234 1.45911 1.39371 1.21230 1.05910 1.23420 0.97164 0.95086 0.91944 1.22157 1.07472 1.01556 0.96431 1.24997 0.95690 0.96230 0.94991 1.77579 1.16296 1.07446 1.11880 1.69152 1.25744 1.14294 1.29570 1.19471 0.87844 0.85454 0.85956 1.69951 1.36945 1.36681 1.00366 1.42250 1.49931 1.30613 1.02647 0.72676 0.91413 0.92838 0.93870 0.93869 0.92832 0.91419 0.98865 0.98868 0.93189 0.90933 0.90937 0.73922 0.82990 0.78973 0.79174 0.75576 0.82967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 8.05 71.98 0.58 -3.02 16 2 C -0.06 -1.95 0.54 -52.18 -0.03 -1.98 16 3 C -0.13 -3.60 8.05 71.98 0.58 -3.02 16 4 C 0.04 1.86 4.04 29.85 0.12 1.98 16 5 C -0.52 -25.69 7.65 25.60 0.20 -25.49 16 6 H 0.07 3.25 5.68 -2.91 -0.02 3.23 16 7 C 0.00 0.00 5.46 84.65 0.46 0.46 16 8 N -0.93 -54.00 13.29 21.45 0.28 -53.71 16 9 Si 0.95 41.81 29.54 68.60 2.03 43.84 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 13 C 0.14 3.68 3.78 86.38 0.33 4.00 16 14 N -0.68 -13.22 5.06 -343.88 -1.74 -14.96 16 15 C 0.53 11.80 7.74 131.94 1.02 12.82 16 16 C -0.40 -10.73 8.92 22.60 0.20 -10.53 16 17 C 0.52 14.83 7.57 133.17 1.01 15.84 16 18 N -0.35 -9.27 3.79 -191.88 -0.73 -10.00 16 19 C 0.06 1.31 11.10 83.35 0.92 2.23 16 20 C -0.25 -3.93 10.80 22.01 0.24 -3.69 16 21 C 0.07 1.29 12.02 85.29 1.03 2.32 16 22 N -0.31 -8.35 11.85 -56.95 -0.67 -9.02 16 23 N -0.65 -18.55 9.95 -195.39 -1.94 -20.50 16 24 C 0.58 15.91 8.69 261.62 2.27 18.18 16 25 N -0.80 -22.27 14.20 -59.93 -0.85 -23.12 16 26 N -0.62 -13.29 5.46 -195.09 -1.06 -14.36 16 27 H 0.43 6.92 8.93 -92.71 -0.83 6.10 16 28 H 0.07 1.38 6.86 -2.39 -0.02 1.36 16 29 H 0.05 1.72 6.62 -2.39 -0.02 1.71 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.05 1.73 6.62 -2.39 -0.02 1.71 16 33 H 0.07 1.38 6.86 -2.39 -0.02 1.36 16 34 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 37 H 0.07 2.00 7.93 -2.38 -0.02 1.98 16 38 H 0.07 2.00 7.94 -2.39 -0.02 1.98 16 39 H 0.42 6.22 6.28 -92.71 -0.58 5.64 16 40 H 0.15 4.36 6.38 -2.91 -0.02 4.35 16 41 H 0.19 3.38 8.05 -2.91 -0.02 3.36 16 42 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.23 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.35 9.55 8.90 -92.71 -0.82 8.73 16 Total: -1.00 -67.73 362.88 3.07 -64.67 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -1.17 Total: 27.07 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 8.93 Total: 10.10 kcal Atomic # 7 Polarization: -138.95 SS G_CDS: -6.72 Total: -145.67 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -67.73 3.07 -64.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340886992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.059 kcal (2) G-P(sol) polarization free energy of solvation -67.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds