Wall clock time and date at job start Tue Mar 31 2020 11:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00286 * 2 1 4 4 H 1.48496 * 109.47338 * 240.00133 * 3 2 1 5 5 H 1.48506 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47276 * 120.00019 * 3 2 1 7 7 C 1.37880 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00103 * 175.45009 * 7 2 1 9 9 C 1.50698 * 120.00022 * 355.73057 * 7 2 1 10 10 C 1.52998 * 115.55176 * 275.46067 * 9 7 2 11 11 N 1.46511 * 109.46837 * 300.26402 * 10 9 7 12 12 C 1.34773 * 119.99876 * 184.58184 * 11 10 9 13 13 O 1.21275 * 119.99932 * 4.97418 * 12 11 10 14 14 C 1.50694 * 119.99587 * 184.97600 * 12 11 10 15 15 C 1.53117 * 109.52637 * 297.67385 * 14 12 11 16 16 C 1.53043 * 109.28041 * 182.44529 * 15 14 12 17 17 N 1.46839 * 109.52405 * 59.17700 * 16 15 14 18 18 C 1.46904 * 111.00054 * 174.16392 * 17 16 15 19 19 C 1.52998 * 109.47323 * 200.41859 * 18 17 16 20 20 F 1.39901 * 109.47322 * 293.81760 * 19 18 17 21 21 F 1.39910 * 109.47163 * 53.81361 * 19 18 17 22 22 C 1.46853 * 111.20179 * 298.25664 * 17 16 15 23 23 C 1.53043 * 109.51727 * 61.74502 * 22 17 16 24 24 C 1.53004 * 117.50126 * 129.78295 * 9 7 2 25 25 C 1.53004 * 117.49712 * 61.12702 * 9 7 2 26 26 H 0.96996 * 119.99973 * 4.99510 * 1 2 3 27 27 H 1.09002 * 109.47140 * 60.26235 * 10 9 7 28 28 H 1.08996 * 109.47400 * 180.26680 * 10 9 7 29 29 H 0.97003 * 119.99780 * 4.57958 * 11 10 9 30 30 H 1.09001 * 109.52481 * 57.86921 * 14 12 11 31 31 H 1.09003 * 109.50297 * 302.38148 * 15 14 12 32 32 H 1.08994 * 109.50488 * 62.49853 * 15 14 12 33 33 H 1.08993 * 109.45747 * 299.16016 * 16 15 14 34 34 H 1.09003 * 109.45236 * 179.18760 * 16 15 14 35 35 H 1.09003 * 109.46519 * 320.41280 * 18 17 16 36 36 H 1.08992 * 109.47053 * 80.41539 * 18 17 16 37 37 H 1.08996 * 109.47226 * 173.81453 * 19 18 17 38 38 H 1.08994 * 109.46286 * 301.73224 * 22 17 16 39 39 H 1.08992 * 109.45731 * 181.75376 * 22 17 16 40 40 H 1.09007 * 109.49872 * 180.88465 * 23 22 17 41 41 H 1.08992 * 109.50807 * 60.76208 * 23 22 17 42 42 H 1.09003 * 117.49628 * 0.02562 * 24 9 7 43 43 H 1.09002 * 117.49753 * 145.02132 * 24 9 7 44 44 H 1.09001 * 117.49790 * 214.98184 * 25 9 7 45 45 H 1.08996 * 117.50195 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0820 -1.1955 -0.0747 9 6 1.2542 -2.4974 0.0960 10 6 0.9006 -2.9518 1.5135 11 7 2.1295 -3.1188 2.2936 12 6 2.0698 -3.6043 3.5494 13 8 1.0117 -3.9873 4.0018 14 6 3.3177 -3.6711 4.3915 15 6 4.3323 -4.6075 3.7294 16 6 5.5725 -4.7191 4.6191 17 7 5.1861 -5.2397 5.9366 18 6 6.3688 -5.4906 6.7711 19 6 6.0066 -6.4724 7.8872 20 9 5.0896 -5.8723 8.7569 21 9 5.4369 -7.6224 7.3300 22 6 4.2485 -4.3332 6.6118 23 6 2.9687 -4.2103 5.7816 24 6 1.5862 -3.5816 -0.9313 25 6 0.2591 -2.8240 -1.0194 26 1 -0.4850 0.8368 -0.0731 27 1 0.2680 -2.2019 1.9883 28 1 0.3672 -3.9013 1.4683 29 1 2.9861 -2.8800 1.9061 30 1 3.7479 -2.6740 4.4850 31 1 3.8869 -5.5940 3.6007 32 1 4.6170 -4.2064 2.7568 33 1 6.0252 -3.7345 4.7361 34 1 6.2908 -5.3965 4.1573 35 1 7.1631 -5.9154 6.1572 36 1 6.7101 -4.5526 7.2089 37 1 6.9067 -6.7436 8.4388 38 1 4.7074 -3.3505 6.7195 39 1 4.0054 -4.7305 7.5972 40 1 2.2793 -3.5251 6.2751 41 1 2.5019 -5.1904 5.6850 42 1 2.3477 -3.3523 -1.6767 43 1 1.5525 -4.6186 -0.5973 44 1 -0.6473 -3.3629 -0.7433 45 1 0.1468 -2.0960 -1.8227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357679064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:54 Heat of formation + Delta-G solvation = -124.545368 kcal Electronic energy + Delta-G solvation = -27125.101025 eV Core-core repulsion = 23006.269745 eV Total energy + Delta-G solvation = -4118.831280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.11311 -47.10215 -39.87434 -38.24134 -36.64926 -33.96237 -33.24342 -31.98886 -30.90385 -29.58115 -26.59592 -25.43784 -24.31318 -23.16321 -22.33608 -21.16649 -20.33646 -19.55020 -19.08087 -17.89807 -17.51429 -16.84523 -16.60435 -16.03314 -15.65071 -15.13108 -14.93222 -14.69669 -14.49804 -14.27152 -14.06689 -13.87512 -13.53725 -13.44875 -13.13565 -12.97384 -12.71394 -12.60774 -12.40100 -12.12537 -11.76848 -11.61474 -11.58820 -11.24868 -11.00290 -10.97961 -10.92983 -10.60470 -10.57183 -10.35060 -10.23635 -9.59192 -9.16010 -9.04156 -8.64342 -8.51372 -8.25707 -8.04539 -6.09819 -4.20102 3.23307 3.24082 3.30219 3.30718 3.36269 3.64469 3.88451 3.98667 4.19580 4.32244 4.59296 4.70087 4.77445 4.94749 5.02879 5.13871 5.15996 5.18064 5.29229 5.31118 5.44106 5.47605 5.54941 5.68130 5.75441 5.92270 6.02769 6.08829 6.20447 6.33655 6.43085 6.49764 6.57084 6.69978 6.71311 6.80332 6.89522 7.11694 7.31602 7.37962 7.52931 7.78144 8.31738 8.34937 8.81059 8.92692 9.47123 10.97391 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.002874 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.552701 B = 9739.680128 C =10155.089414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.163 3.837 11 N -0.702 5.702 12 C 0.509 3.491 13 O -0.557 6.557 14 C -0.109 4.109 15 C -0.107 4.107 16 C 0.060 3.940 17 N -0.533 5.533 18 C 0.001 3.999 19 C 0.270 3.730 20 F -0.205 7.205 21 F -0.195 7.195 22 C 0.041 3.959 23 C -0.093 4.093 24 C -0.211 4.211 25 C -0.144 4.144 26 H 0.262 0.738 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.400 0.600 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.035 0.965 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.014 -9.648 12.859 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.025 3.975 10 C 0.040 3.960 11 N -0.350 5.350 12 C 0.294 3.706 13 O -0.436 6.436 14 C -0.131 4.131 15 C -0.145 4.145 16 C -0.067 4.067 17 N -0.258 5.258 18 C -0.129 4.129 19 C 0.215 3.785 20 F -0.187 7.187 21 F -0.176 7.176 22 C -0.086 4.086 23 C -0.131 4.131 24 C -0.248 4.248 25 C -0.182 4.182 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.235 0.765 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.053 0.947 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.780 -10.210 13.152 21.613 hybrid contribution 1.100 1.935 -0.194 2.235 sum 14.881 -8.274 12.958 21.397 Atomic orbital electron populations 1.69976 1.05888 1.27001 1.48095 1.24989 0.94810 0.98931 0.94302 0.86698 0.79665 0.83244 0.78597 1.20269 1.21261 1.20189 1.20300 0.92511 0.88603 1.52497 0.92282 1.19025 0.99270 0.93234 0.86012 1.20949 0.84828 0.98175 0.92076 1.45979 1.11742 1.63546 1.13780 1.20409 0.90098 0.77706 0.82380 1.90645 1.31530 1.48986 1.72484 1.21392 0.94855 1.00823 0.96023 1.21569 0.94398 1.00558 0.97975 1.22117 0.97409 0.98392 0.88822 1.61893 1.12807 1.47961 1.03162 1.23211 0.94715 0.99136 0.95789 1.21969 0.87994 0.81106 0.87405 1.92908 1.70514 1.83917 1.71325 1.93013 1.87194 1.51012 1.86392 1.22539 0.93179 0.93999 0.98932 1.21359 0.95907 1.02896 0.92940 1.23027 1.00489 0.95631 1.05659 1.22462 0.90914 1.01385 1.03438 0.92787 0.91674 0.94234 0.76519 0.89123 0.90343 0.90449 0.94360 0.90270 0.87913 0.91562 0.87282 0.94702 0.88805 0.90747 0.90173 0.90445 0.91712 0.91833 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.07 12.68 55.43 0.70 -23.37 16 2 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 3 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.50 -12.69 8.33 -34.44 -0.29 -12.97 16 8 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.03 0.59 1.54 -155.66 -0.24 0.35 16 10 C 0.16 3.70 5.54 -4.04 -0.02 3.68 16 11 N -0.70 -13.58 5.38 -60.29 -0.32 -13.90 16 12 C 0.51 9.48 7.13 -10.99 -0.08 9.40 16 13 O -0.56 -12.46 15.95 5.56 0.09 -12.37 16 14 C -0.11 -1.52 2.59 -91.65 -0.24 -1.76 16 15 C -0.11 -1.25 5.27 -26.65 -0.14 -1.39 16 16 C 0.06 0.57 5.42 -3.83 -0.02 0.54 16 17 N -0.53 -5.41 4.40 -234.67 -1.03 -6.44 16 18 C 0.00 0.01 5.38 -3.82 -0.02 -0.01 16 19 C 0.27 1.99 5.58 37.16 0.21 2.19 16 20 F -0.21 -2.00 14.67 2.25 0.03 -1.96 16 21 F -0.19 -2.08 17.15 2.25 0.04 -2.04 16 22 C 0.04 0.45 5.23 -3.83 -0.02 0.43 16 23 C -0.09 -1.27 4.69 -26.64 -0.13 -1.39 16 24 C -0.21 -4.40 9.95 -26.69 -0.27 -4.66 16 25 C -0.14 -3.31 9.20 -26.69 -0.25 -3.55 16 26 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 27 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 28 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 29 H 0.40 7.10 7.63 -40.82 -0.31 6.79 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.84 7.67 -51.93 -0.40 0.44 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 35 H 0.10 0.52 7.79 -51.93 -0.40 0.12 16 36 H 0.07 0.39 7.99 -51.93 -0.42 -0.03 16 37 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 1.06 5.45 -51.93 -0.28 0.77 16 40 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 41 H 0.08 1.24 8.01 -51.93 -0.42 0.83 16 42 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -30.64 368.62 -8.81 -39.45 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.25 Total: 7.16 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.59 Total: -7.30 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: -0.65 Total: -43.71 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.07 Total: -4.01 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.64 -8.81 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357679064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.097 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds