Wall clock time and date at job start Tue Mar 31 2020 10:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99996 * 2 1 4 4 H 1.48500 * 109.46984 * 269.99624 * 3 2 1 5 5 H 1.48503 * 109.47347 * 29.99633 * 3 2 1 6 6 H 1.48500 * 109.47387 * 149.99643 * 3 2 1 7 7 C 1.38815 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00542 * 163.08778 * 7 2 1 9 9 N 1.36940 * 119.99367 * 343.08536 * 7 2 1 10 10 C 1.46922 * 120.63517 * 331.80920 * 9 7 2 11 11 C 1.53197 * 108.77589 * 233.62857 * 10 9 7 12 12 C 1.53040 * 109.34079 * 305.38379 * 11 10 9 13 13 C 1.53041 * 109.54090 * 61.31059 * 12 11 10 14 14 H 1.09006 * 109.49520 * 58.65442 * 13 12 11 15 15 C 1.52991 * 109.49806 * 178.71482 * 13 12 11 16 16 N 1.46500 * 109.47324 * 184.93894 * 15 13 12 17 17 C 1.34774 * 120.00149 * 180.02562 * 16 15 13 18 18 O 1.21281 * 120.00037 * 359.97438 * 17 16 15 19 19 C 1.50705 * 120.00061 * 180.02562 * 17 16 15 20 20 H 1.08997 * 110.43166 * 302.53976 * 19 17 16 21 21 C 1.54893 * 110.48511 * 65.22419 * 19 17 16 22 22 C 1.54886 * 102.74773 * 156.62091 * 21 19 17 23 23 C 1.54262 * 104.19701 * 322.05941 * 22 21 19 24 24 F 1.39911 * 110.02936 * 264.32387 * 23 22 21 25 25 F 1.39900 * 110.07521 * 142.91727 * 23 22 21 26 26 C 1.53874 * 106.60131 * 23.60561 * 23 22 21 27 27 C 1.46934 * 120.62432 * 151.83013 * 9 7 2 28 28 H 0.97003 * 120.00081 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.58359 * 353.41709 * 10 9 7 30 30 H 1.09003 * 109.58522 * 113.70340 * 10 9 7 31 31 H 1.09002 * 109.49193 * 65.31701 * 11 10 9 32 32 H 1.08996 * 109.49892 * 185.41318 * 11 10 9 33 33 H 1.09001 * 109.42739 * 301.31151 * 12 11 10 34 34 H 1.08989 * 109.48614 * 181.35532 * 12 11 10 35 35 H 1.08995 * 109.47373 * 304.94172 * 15 13 12 36 36 H 1.09002 * 109.46933 * 64.94169 * 15 13 12 37 37 H 0.97003 * 120.00169 * 0.02562 * 16 15 13 38 38 H 1.08998 * 110.75488 * 274.93597 * 21 19 17 39 39 H 1.08996 * 110.75910 * 38.30317 * 21 19 17 40 40 H 1.08998 * 110.49033 * 203.37633 * 22 21 19 41 41 H 1.09009 * 110.59794 * 80.78751 * 22 21 19 42 42 H 1.09001 * 110.03482 * 240.71906 * 26 23 22 43 43 H 1.08997 * 110.06912 * 119.30913 * 26 23 22 44 44 H 1.08998 * 109.58687 * 6.58308 * 27 9 7 45 45 H 1.08994 * 109.58399 * 246.15723 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2715 9 7 1.3699 -2.3622 0.3461 10 6 0.2263 -2.3400 1.2682 11 6 0.4983 -3.3188 2.4149 12 6 0.8136 -4.7007 1.8377 13 6 2.0682 -4.6169 0.9652 14 1 2.9036 -4.2530 1.5633 15 6 2.4008 -6.0050 0.4146 16 7 3.6655 -5.9477 -0.3227 17 6 4.1599 -7.0606 -0.9002 18 8 3.5581 -8.1097 -0.8091 19 6 5.4611 -7.0018 -1.6581 20 1 5.4013 -6.2664 -2.4604 21 6 6.6320 -6.6693 -0.7001 22 6 7.8614 -7.2344 -1.4539 23 6 7.3452 -8.5390 -2.0951 24 9 7.6530 -9.6303 -1.2755 25 9 7.9191 -8.7126 -3.3591 26 6 5.8191 -8.3912 -2.2249 27 6 1.8139 -3.6529 -0.1979 28 1 -0.4850 0.8401 -0.0004 29 1 0.0993 -1.3342 1.6686 30 1 -0.6774 -2.6386 0.7368 31 1 1.3482 -2.9668 2.9996 32 1 -0.3820 -3.3838 3.0543 33 1 -0.0269 -5.0415 1.2332 34 1 0.9839 -5.4047 2.6521 35 1 2.4932 -6.7108 1.2400 36 1 1.6046 -6.3308 -0.2547 37 1 4.1471 -5.1088 -0.3953 38 1 6.7246 -5.5920 -0.5628 39 1 6.5017 -7.1720 0.2581 40 1 8.6719 -7.4466 -0.7568 41 1 8.1936 -6.5369 -2.2229 42 1 5.3182 -9.1697 -1.6493 43 1 5.5249 -8.4542 -3.2726 44 1 2.7344 -3.5133 -0.7647 45 1 1.0402 -4.0609 -0.8482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359584822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:47 Heat of formation + Delta-G solvation = -142.121359 kcal Electronic energy + Delta-G solvation = -26996.170405 eV Core-core repulsion = 22876.576972 eV Total energy + Delta-G solvation = -4119.593432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.16206 -47.23183 -40.17678 -38.02445 -36.83188 -34.90844 -33.06271 -30.67338 -30.48286 -29.66022 -28.39451 -25.50357 -25.24221 -22.67335 -22.07790 -21.41879 -20.93555 -20.08710 -19.09501 -18.11067 -17.47125 -16.80971 -16.71213 -16.06744 -15.79904 -15.37701 -14.86868 -14.67647 -14.53341 -14.18702 -14.07790 -13.71837 -13.56778 -13.48587 -13.44252 -12.84371 -12.53107 -12.45626 -12.27476 -12.22116 -12.16230 -12.12583 -11.74221 -11.34295 -11.27155 -11.07426 -11.00738 -10.74900 -10.55831 -10.29728 -10.23493 -10.02470 -9.90435 -9.60102 -9.47690 -9.01754 -8.52032 -6.72791 -5.84733 -3.28031 2.52840 3.03573 3.32170 3.39812 3.41052 3.46100 3.67118 3.75954 4.09111 4.42674 4.50657 4.67926 4.74881 4.83746 4.88934 4.99872 5.09546 5.24295 5.29671 5.37722 5.38380 5.41980 5.56520 5.59661 5.63657 5.75074 5.77506 5.89338 5.94461 6.17600 6.26972 6.32112 6.43253 6.53420 6.64692 6.71485 6.80559 6.90227 7.34717 7.48106 7.62294 7.72533 8.15663 8.38736 9.14887 9.78451 10.35351 11.23547 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.002842 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.327955 B = 9849.489207 C =10975.350460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.126 3.874 16 N -0.719 5.719 17 C 0.519 3.481 18 O -0.543 6.543 19 C -0.114 4.114 20 H 0.114 0.886 21 C -0.113 4.113 22 C -0.160 4.160 23 C 0.281 3.719 24 F -0.197 7.197 25 F -0.200 7.200 26 C -0.152 4.152 27 C 0.154 3.846 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.018 0.982 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.404 0.596 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.050 0.950 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.279 -13.355 -0.695 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.002 3.998 16 N -0.370 5.370 17 C 0.305 3.695 18 O -0.421 6.421 19 C -0.135 4.135 20 H 0.132 0.868 21 C -0.151 4.151 22 C -0.198 4.198 23 C 0.245 3.755 24 F -0.178 7.178 25 F -0.181 7.181 26 C -0.190 4.190 27 C 0.027 3.973 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.239 0.761 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.133 0.867 43 H 0.118 0.882 44 H 0.068 0.932 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 11.730 -13.971 -0.646 18.254 hybrid contribution 0.678 1.156 -0.164 1.350 sum 12.408 -12.814 -0.810 17.856 Atomic orbital electron populations 1.70032 1.05309 1.25572 1.53570 1.25051 0.95266 0.98440 1.00768 0.86324 0.79162 0.83690 0.77722 1.21378 1.21540 1.20482 1.19132 0.92451 0.84827 1.42139 0.91791 1.44033 1.35942 1.01304 1.50094 1.20798 0.88555 0.98314 0.88038 1.22167 1.00120 0.95941 0.99834 1.21338 0.96732 0.97760 0.97960 1.21958 0.98891 0.93555 0.99428 0.90858 1.21490 0.84752 0.98075 0.95439 1.46047 1.24909 1.11639 1.54373 1.20217 0.86294 0.83838 0.79165 1.90694 1.60790 1.29889 1.60701 1.22097 0.93561 0.98624 0.99219 0.86829 1.22500 0.91451 1.02863 0.98264 1.23368 0.99796 0.94835 1.01768 1.21812 0.93796 0.85123 0.74805 1.93029 1.94439 1.57810 1.72546 1.93017 1.86762 1.96225 1.42070 1.23078 0.91515 0.99245 1.05190 1.20894 0.97435 0.86875 0.92069 0.93577 0.89584 0.96425 0.92752 0.93163 0.92479 0.93432 0.91921 0.91513 0.76091 0.88779 0.89799 0.88525 0.87903 0.86745 0.88250 0.93194 0.96383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.47 11.20 55.49 0.62 -24.85 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.26 -6.68 9.58 -15.06 -0.14 -6.82 16 8 H 0.06 1.61 7.88 -52.49 -0.41 1.20 16 9 N -0.59 -14.00 2.99 -172.32 -0.52 -14.52 16 10 C 0.17 3.87 5.30 -3.71 -0.02 3.85 16 11 C -0.14 -2.56 6.08 -26.61 -0.16 -2.72 16 12 C -0.10 -1.56 5.17 -26.69 -0.14 -1.70 16 13 C -0.12 -1.81 2.37 -90.50 -0.21 -2.02 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 15 C 0.13 1.70 5.07 -4.05 -0.02 1.68 16 16 N -0.72 -8.40 5.32 -60.30 -0.32 -8.72 16 17 C 0.52 6.28 7.13 -10.98 -0.08 6.21 16 18 O -0.54 -8.60 15.42 5.56 0.09 -8.52 16 19 C -0.11 -0.98 3.25 -90.11 -0.29 -1.27 16 20 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 21 C -0.11 -0.78 6.31 -24.74 -0.16 -0.94 16 22 C -0.16 -1.08 6.40 -25.08 -0.16 -1.24 16 23 C 0.28 2.63 2.57 -25.62 -0.07 2.56 16 24 F -0.20 -2.22 17.04 2.25 0.04 -2.18 16 25 F -0.20 -2.10 17.04 2.25 0.04 -2.06 16 26 C -0.15 -1.44 5.88 -25.61 -0.15 -1.59 16 27 C 0.15 2.94 5.60 -3.71 -0.02 2.91 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.65 8.14 -51.94 -0.42 0.23 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.40 4.09 7.70 -40.82 -0.31 3.78 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 40 H 0.10 0.58 8.11 -51.93 -0.42 0.16 16 41 H 0.10 0.56 8.12 -51.92 -0.42 0.14 16 42 H 0.11 1.30 6.72 -51.93 -0.35 0.95 16 43 H 0.10 0.86 8.02 -51.93 -0.42 0.44 16 44 H 0.05 0.90 7.14 -51.93 -0.37 0.52 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -30.89 361.24 -8.57 -39.46 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.23 Total: 1.18 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -1.71 Total: -1.08 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.22 Total: -48.10 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.08 Total: -4.24 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.89 -8.57 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359584822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.659 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds