Wall clock time and date at job start Tue Mar 31 2020 11:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48499 * 109.46846 * 269.99951 * 3 2 1 5 5 H 1.48493 * 109.47148 * 29.99902 * 3 2 1 6 6 H 1.48496 * 109.46860 * 150.00142 * 3 2 1 7 7 C 1.37882 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99627 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99817 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46593 * 179.97438 * 9 7 2 11 11 C 1.53043 * 109.45561 * 174.99751 * 10 9 7 12 12 C 1.53195 * 109.30982 * 181.38845 * 11 10 9 13 13 N 1.46927 * 108.77679 * 305.36419 * 12 11 10 14 14 C 1.34774 * 120.63363 * 233.58814 * 13 12 11 15 15 O 1.21586 * 120.00204 * 5.21960 * 14 13 12 16 16 N 1.34781 * 119.99809 * 185.22218 * 14 13 12 17 17 C 1.46506 * 119.99815 * 175.01670 * 16 14 13 18 18 C 1.52995 * 109.47245 * 179.97438 * 17 16 14 19 19 C 1.53777 * 113.61441 * 274.13818 * 18 17 16 20 20 C 1.53953 * 87.02034 * 220.04743 * 19 18 17 21 21 F 1.39902 * 113.53756 * 270.80957 * 20 19 18 22 22 F 1.39901 * 113.67031 * 139.92963 * 20 19 18 23 23 C 1.53776 * 113.61530 * 176.52828 * 18 17 16 24 24 C 1.46933 * 118.73450 * 53.85980 * 13 12 11 25 25 C 1.53031 * 109.46360 * 295.06865 * 10 9 7 26 26 H 0.96998 * 119.99990 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47475 * 60.00042 * 9 7 2 28 28 H 1.08996 * 109.47334 * 299.99571 * 9 7 2 29 29 H 1.09000 * 109.45697 * 55.03300 * 10 9 7 30 30 H 1.09001 * 109.49643 * 61.44149 * 11 10 9 31 31 H 1.09000 * 109.52739 * 301.35535 * 11 10 9 32 32 H 1.09003 * 109.58552 * 185.58028 * 12 11 10 33 33 H 1.08997 * 109.70831 * 65.22659 * 12 11 10 34 34 H 0.96994 * 119.99968 * 355.00995 * 16 14 13 35 35 H 1.09005 * 109.46500 * 299.99896 * 17 16 14 36 36 H 1.08996 * 109.46988 * 59.99616 * 17 16 14 37 37 H 1.09004 * 112.84965 * 45.32777 * 18 17 16 38 38 H 1.09011 * 113.61311 * 334.56238 * 19 18 17 39 39 H 1.08995 * 113.62198 * 105.46714 * 19 18 17 40 40 H 1.09002 * 113.61257 * 254.52657 * 23 18 17 41 41 H 1.08993 * 113.61578 * 25.34184 * 23 18 17 42 42 H 1.08996 * 109.58505 * 65.92996 * 24 13 12 43 43 H 1.09002 * 109.58175 * 186.35075 * 24 13 12 44 44 H 1.09006 * 109.49997 * 298.56658 * 25 10 9 45 45 H 1.09001 * 109.49835 * 58.62669 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5468 -2.6380 -0.1230 12 6 6.0509 -4.0843 -0.1564 13 7 5.5420 -4.7900 1.0276 14 6 6.3846 -5.4399 1.8547 15 8 7.5855 -5.3674 1.6789 16 7 5.8959 -6.1702 2.8766 17 6 6.8032 -6.9642 3.7091 18 6 5.9996 -7.6913 4.7890 19 6 5.7581 -6.8463 6.0509 20 6 6.0166 -8.1291 6.8619 21 9 4.8633 -8.8870 7.0912 22 9 6.7691 -7.9179 8.0222 23 6 6.8508 -8.6227 5.6680 24 6 4.0962 -4.7788 1.2894 25 6 3.6146 -3.3202 1.3095 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8752 -0.6804 -0.8888 29 1 3.5876 -3.1757 -0.8397 30 1 5.9826 -2.1206 0.7317 31 1 5.8374 -2.1302 -1.0426 32 1 7.1409 -4.0917 -0.1456 33 1 5.6911 -4.5782 -1.0589 34 1 4.9437 -6.1701 3.0610 35 1 7.3210 -7.6946 3.0873 36 1 7.5329 -6.3061 4.1808 37 1 5.0970 -8.1625 4.3998 38 1 6.5089 -6.0717 6.2080 39 1 4.7380 -6.4721 6.1373 40 1 6.7115 -9.6806 5.4457 41 1 7.9010 -8.3357 5.7190 42 1 3.5781 -5.3266 0.5023 43 1 3.8960 -5.2446 2.2543 44 1 4.0685 -2.7962 2.1508 45 1 2.5294 -3.2973 1.4096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567757854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:31 Heat of formation + Delta-G solvation = -118.458070 kcal Electronic energy + Delta-G solvation = -26594.854191 eV Core-core repulsion = 22476.286875 eV Total energy + Delta-G solvation = -4118.567315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.18741 -47.52519 -40.41629 -38.83042 -37.45741 -34.54201 -34.00157 -32.14894 -30.78808 -28.90425 -27.75472 -26.76316 -24.61680 -23.24986 -22.81187 -21.60198 -20.65770 -19.97732 -19.26110 -18.23566 -17.55901 -16.95979 -16.76330 -16.69474 -16.39730 -15.79221 -15.10094 -14.56945 -14.39115 -14.38370 -14.19465 -13.85016 -13.81082 -13.76812 -13.47040 -13.21528 -13.13210 -13.05322 -12.71703 -12.32545 -12.13726 -11.85839 -11.65885 -11.50322 -11.42104 -11.17501 -10.94609 -10.89103 -10.68309 -10.35771 -10.14571 -9.80843 -9.72982 -9.50934 -9.24912 -9.09456 -8.56464 -8.33702 -6.07626 -4.05111 2.61043 3.02841 3.22054 3.28416 3.32205 3.36536 3.40171 3.71577 3.81123 3.84374 4.04335 4.42720 4.64638 4.78297 4.92017 4.94993 5.02566 5.08079 5.20982 5.23096 5.25901 5.37947 5.39867 5.43208 5.44742 5.60059 5.63653 5.72240 5.89619 6.00887 6.22776 6.27837 6.34008 6.38796 6.54435 6.76590 6.83269 6.92990 6.99028 7.22563 7.41720 7.76751 7.93288 8.49971 8.59882 8.96648 9.55737 11.05531 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017053 B = 0.002571 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.556580 B =10889.243361 C =11854.602119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.071 4.071 11 C -0.133 4.133 12 C 0.130 3.870 13 N -0.623 5.623 14 C 0.708 3.292 15 O -0.598 6.598 16 N -0.750 5.750 17 C 0.153 3.847 18 C -0.119 4.119 19 C -0.162 4.162 20 C 0.253 3.747 21 F -0.180 7.180 22 F -0.191 7.191 23 C -0.154 4.154 24 C 0.110 3.890 25 C -0.119 4.119 26 H 0.262 0.738 27 H 0.015 0.985 28 H 0.012 0.988 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.397 0.603 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.668 -17.498 9.907 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.090 4.090 11 C -0.171 4.171 12 C 0.007 3.993 13 N -0.359 5.359 14 C 0.409 3.591 15 O -0.478 6.478 16 N -0.409 5.409 17 C 0.029 3.971 18 C -0.138 4.138 19 C -0.200 4.200 20 C 0.216 3.784 21 F -0.160 7.160 22 F -0.172 7.172 23 C -0.193 4.193 24 C -0.013 4.013 25 C -0.158 4.158 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.030 0.970 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.234 0.766 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.135 0.865 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.385 -17.356 9.809 24.013 hybrid contribution -0.379 0.913 0.344 1.047 sum 13.006 -16.443 10.153 23.294 Atomic orbital electron populations 1.69909 1.06278 1.26855 1.51300 1.25030 0.94691 0.99136 0.94657 0.86812 0.80380 0.83797 0.78487 1.20365 1.21506 1.19061 1.21131 0.89421 0.94294 1.50564 0.90867 1.19619 0.97145 0.91687 0.96245 1.20986 0.92310 0.98980 0.96705 1.22078 0.97821 0.95055 1.02168 1.21525 0.99952 0.92192 0.85581 1.47354 1.06893 1.54660 1.27028 1.15800 0.85058 0.78691 0.79520 1.90886 1.13354 1.68309 1.75212 1.45238 1.11060 1.51252 1.33373 1.21036 0.91535 0.93778 0.90798 1.22657 1.00208 0.96796 0.94155 1.24282 1.05973 0.96216 0.93499 1.22121 0.80488 0.94120 0.81646 1.93030 1.50177 1.77413 1.95425 1.93021 1.75711 1.95152 1.53269 1.24059 1.01031 1.02289 0.91875 1.21890 0.79857 0.99281 1.00276 1.21977 1.02594 0.92460 0.98720 0.92785 0.96712 0.97006 0.91735 0.92075 0.91119 0.89525 0.91903 0.76573 0.91057 0.91057 0.87109 0.86568 0.88435 0.88408 0.86485 0.91315 0.91441 0.92341 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 2 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -13.83 8.94 -34.44 -0.31 -14.14 16 8 H 0.07 2.08 7.30 -52.49 -0.38 1.70 16 9 C -0.01 -0.22 3.52 -27.88 -0.10 -0.31 16 10 C -0.07 -1.27 2.10 -90.58 -0.19 -1.46 16 11 C -0.13 -2.05 5.36 -26.61 -0.14 -2.20 16 12 C 0.13 1.82 6.44 -3.71 -0.02 1.80 16 13 N -0.62 -8.52 2.97 -178.23 -0.53 -9.05 16 14 C 0.71 9.99 8.30 -86.92 -0.72 9.27 16 15 O -0.60 -10.49 15.77 5.29 0.08 -10.40 16 16 N -0.75 -7.53 5.47 -65.22 -0.36 -7.89 16 17 C 0.15 1.22 5.50 -4.04 -0.02 1.19 16 18 C -0.12 -0.66 3.73 -89.81 -0.33 -1.00 16 19 C -0.16 -0.99 7.43 -25.83 -0.19 -1.18 16 20 C 0.25 1.86 3.28 -25.83 -0.08 1.78 16 21 F -0.18 -1.62 17.38 2.25 0.04 -1.59 16 22 F -0.19 -1.77 17.41 2.25 0.04 -1.73 16 23 C -0.15 -0.79 7.43 -25.92 -0.19 -0.98 16 24 C 0.11 1.37 6.42 -3.48 -0.02 1.34 16 25 C -0.12 -1.92 5.21 -26.39 -0.14 -2.06 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.27 7.00 -51.93 -0.36 0.90 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.40 3.24 5.96 -40.82 -0.24 3.00 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 37 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.12 0.68 7.92 -51.92 -0.41 0.27 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.12 0.50 8.10 -51.93 -0.42 0.07 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.66 5.64 -51.93 -0.29 0.37 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 1.59 6.91 -51.93 -0.36 1.23 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -32.67 361.48 -8.78 -41.45 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.04 Total: -0.37 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.57 Total: -6.20 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.11 Total: -43.28 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.31 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.67 -8.78 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567757854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.007 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds