Wall clock time and date at job start Tue Mar 31 2020 11:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 119.99799 * 2 1 4 4 H 1.48499 * 109.47133 * 239.99945 * 3 2 1 5 5 H 1.48503 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47295 * 119.99862 * 3 2 1 7 7 C 1.37876 * 120.00682 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99472 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.53346 * 109.41904 * 295.13082 * 10 9 7 12 12 C 1.53195 * 109.14901 * 178.67276 * 11 10 9 13 13 N 1.46919 * 108.89273 * 54.57640 * 12 11 10 14 14 C 1.34778 * 120.63255 * 126.34238 * 13 12 11 15 15 O 1.21279 * 120.00169 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00023 * 179.97438 * 14 13 12 17 17 C 1.53936 * 113.73271 * 278.76442 * 16 14 13 18 18 N 1.48189 * 86.10145 * 221.95983 * 17 16 14 19 19 C 1.46900 * 111.07333 * 137.52642 * 18 17 16 20 20 C 1.52997 * 109.47485 * 70.56198 * 19 18 17 21 21 F 1.39894 * 109.47219 * 300.00688 * 20 19 18 22 22 F 1.39905 * 109.47055 * 60.00294 * 20 19 18 23 23 C 1.47959 * 90.80275 * 24.60105 * 18 17 16 24 24 C 1.46933 * 118.74003 * 306.32349 * 13 12 11 25 25 C 1.53034 * 109.46014 * 174.99948 * 10 9 7 26 26 H 0.97001 * 120.00836 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47447 * 60.00201 * 9 7 2 28 28 H 1.08997 * 109.47449 * 299.99919 * 9 7 2 29 29 H 1.09001 * 109.45799 * 55.03110 * 10 9 7 30 30 H 1.08997 * 109.68637 * 58.70485 * 11 10 9 31 31 H 1.09002 * 109.47277 * 298.50741 * 11 10 9 32 32 H 1.09002 * 109.58720 * 294.71670 * 12 11 10 33 33 H 1.08996 * 109.58651 * 174.43567 * 12 11 10 34 34 H 1.08998 * 112.94151 * 50.33390 * 16 14 13 35 35 H 1.08998 * 113.76132 * 336.24189 * 17 16 14 36 36 H 1.09003 * 113.76036 * 107.60954 * 17 16 14 37 37 H 1.08999 * 109.47115 * 190.56618 * 19 18 17 38 38 H 1.09001 * 109.46770 * 310.56052 * 19 18 17 39 39 H 1.09001 * 109.47271 * 180.02562 * 20 19 18 40 40 H 1.08997 * 113.76084 * 221.09153 * 23 18 17 41 41 H 1.08997 * 113.85617 * 89.72895 * 23 18 17 42 42 H 1.08994 * 109.58580 * 173.39910 * 24 13 12 43 43 H 1.09006 * 109.57831 * 293.67403 * 24 13 12 44 44 H 1.08994 * 109.50232 * 61.43679 * 25 10 9 45 45 H 1.09007 * 109.52628 * 301.35340 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 3.0435 -3.6504 -1.3088 12 6 4.0596 -4.7967 -1.2881 13 7 3.3508 -6.0559 -1.0228 14 6 3.4927 -7.1112 -1.8491 15 8 4.2106 -7.0266 -2.8229 16 6 2.7594 -8.3962 -1.5629 17 6 3.4514 -9.2838 -0.5127 18 7 3.1144 -10.4218 -1.4000 19 6 4.2406 -11.3588 -1.5080 20 6 4.4159 -12.1007 -0.1815 21 9 4.6729 -11.1782 0.8383 22 9 3.2465 -12.8093 0.1146 23 6 3.0611 -9.5195 -2.5715 24 6 2.4846 -6.1432 0.1609 25 6 1.4842 -4.9836 0.1263 26 1 -0.4851 0.8400 0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 2.9291 -3.5552 0.8427 30 1 3.5686 -2.7006 -1.4103 31 1 2.3633 -3.7824 -2.1502 32 1 4.7951 -4.6190 -0.5035 33 1 4.5624 -4.8568 -2.2533 34 1 1.6957 -8.2464 -1.3785 35 1 4.5219 -9.1012 -0.4200 36 1 2.9381 -9.3081 0.4486 37 1 4.0403 -12.0776 -2.3026 38 1 5.1517 -10.8067 -1.7388 39 1 5.2518 -12.7956 -0.2615 40 1 2.2365 -9.7317 -3.2520 41 1 4.0164 -9.4050 -3.0836 42 1 1.9462 -7.0909 0.1506 43 1 3.0920 -6.0779 1.0637 44 1 0.8185 -5.1029 -0.7285 45 1 0.8987 -4.9808 1.0458 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567946305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:24 Heat of formation + Delta-G solvation = -116.731186 kcal Electronic energy + Delta-G solvation = -27066.027751 eV Core-core repulsion = 22947.535319 eV Total energy + Delta-G solvation = -4118.492432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.22768 -47.23061 -40.99895 -39.05842 -37.19704 -34.06605 -32.53194 -32.02008 -30.79910 -28.42190 -27.23307 -26.47135 -24.72319 -23.52914 -22.56100 -21.87494 -20.71869 -19.49469 -18.72662 -17.97885 -17.72429 -17.35044 -16.74961 -16.28548 -16.00923 -15.80213 -15.09481 -14.58719 -14.50537 -14.27378 -14.10307 -13.85483 -13.61515 -13.38909 -13.19139 -13.01132 -12.95556 -12.87811 -12.76537 -12.45789 -12.16051 -11.87207 -11.66869 -11.19357 -11.18807 -11.05887 -10.83827 -10.75741 -10.69732 -10.44474 -10.20803 -9.78191 -9.65188 -9.31983 -9.27311 -8.99670 -8.40648 -8.35615 -6.01132 -4.03170 2.57083 3.01311 3.31747 3.32099 3.36807 3.38728 3.44471 3.81080 4.06339 4.17640 4.30537 4.43645 4.44739 4.76476 4.83128 4.96248 4.99310 5.08449 5.11675 5.32917 5.33855 5.34993 5.40988 5.43736 5.56749 5.62143 5.70705 5.75992 5.80070 5.95384 6.04114 6.32712 6.33496 6.43582 6.50561 6.62454 6.95549 6.98663 7.09183 7.51191 7.64383 7.79076 7.98133 8.19712 8.40745 9.03017 9.60762 11.10099 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.031555 B = 0.002443 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.123047 B =11459.603568 C =11704.235640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.117 4.117 12 C 0.107 3.893 13 N -0.599 5.599 14 C 0.521 3.479 15 O -0.551 6.551 16 C -0.144 4.144 17 C 0.024 3.976 18 N -0.475 5.475 19 C -0.034 4.034 20 C 0.269 3.731 21 F -0.204 7.204 22 F -0.197 7.197 23 C 0.028 3.972 24 C 0.106 3.894 25 C -0.131 4.131 26 H 0.261 0.739 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.350 -24.292 -1.275 25.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.155 4.155 12 C -0.014 4.014 13 N -0.331 5.331 14 C 0.308 3.692 15 O -0.429 6.429 16 C -0.166 4.166 17 C -0.105 4.105 18 N -0.198 5.198 19 C -0.164 4.164 20 C 0.215 3.785 21 F -0.186 7.186 22 F -0.178 7.178 23 C -0.100 4.100 24 C -0.017 4.017 25 C -0.169 4.169 26 H 0.070 0.930 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.012 -24.553 -1.598 25.877 hybrid contribution 0.997 1.496 0.002 1.798 sum 9.009 -23.057 -1.596 24.806 Atomic orbital electron populations 1.69942 1.06051 1.26680 1.50841 1.25014 0.94804 0.99183 0.95426 0.86706 0.79620 0.83365 0.78590 1.20271 1.21357 1.20287 1.21199 0.92905 0.90974 1.50480 0.92661 1.19115 0.93574 0.91031 0.97151 1.21247 0.97974 0.94514 0.96211 1.21943 0.97591 0.97199 0.98780 1.21797 0.94957 0.82796 1.01889 1.48168 1.46228 1.12765 1.25988 1.20313 0.81786 0.84683 0.82397 1.90661 1.40373 1.83362 1.28552 1.23220 1.02338 0.92265 0.98727 1.24026 1.00297 0.88634 0.97574 1.68681 1.34798 1.09461 1.06838 1.23803 0.96324 0.99273 0.97007 1.21893 0.85841 0.85834 0.84940 1.92988 1.94285 1.68419 1.62900 1.93010 1.51756 1.78854 1.94198 1.23865 1.03479 0.89114 0.93553 1.21876 0.92642 0.99879 0.87262 1.22034 0.97535 0.94961 1.02362 0.92975 0.96664 0.96597 0.92336 0.89751 0.92372 0.91865 0.89750 0.85701 0.90304 0.88062 0.87317 0.90830 0.87049 0.88335 0.89383 0.90336 0.91335 0.91952 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.28 55.43 0.74 -25.79 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.01 8.39 -34.44 -0.29 -14.29 16 8 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 10 C -0.08 -1.52 2.10 -90.42 -0.19 -1.71 16 11 C -0.12 -2.10 5.21 -26.45 -0.14 -2.24 16 12 C 0.11 1.65 6.42 -3.71 -0.02 1.62 16 13 N -0.60 -8.38 2.97 -172.77 -0.51 -8.90 16 14 C 0.52 7.24 7.23 -10.99 -0.08 7.16 16 15 O -0.55 -9.35 15.32 5.56 0.09 -9.26 16 16 C -0.14 -1.51 2.90 -90.83 -0.26 -1.77 16 17 C 0.02 0.22 5.43 -2.63 -0.01 0.21 16 18 N -0.48 -4.34 6.18 -238.12 -1.47 -5.81 16 19 C -0.03 -0.23 5.21 -3.83 -0.02 -0.25 16 20 C 0.27 1.83 5.58 37.16 0.21 2.04 16 21 F -0.20 -1.86 15.13 2.25 0.03 -1.82 16 22 F -0.20 -1.87 17.26 2.25 0.04 -1.83 16 23 C 0.03 0.27 7.31 -2.75 -0.02 0.25 16 24 C 0.11 1.30 6.32 -3.71 -0.02 1.28 16 25 C -0.13 -1.99 5.36 -26.62 -0.14 -2.14 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.62 6.93 -51.93 -0.36 1.26 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.35 7.00 -51.93 -0.36 0.99 16 34 H 0.13 1.21 7.29 -51.93 -0.38 0.83 16 35 H 0.08 0.77 7.43 -51.93 -0.39 0.39 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.45 7.70 -51.93 -0.40 0.05 16 39 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.89 7.09 -51.93 -0.37 0.52 16 42 H 0.08 0.78 5.68 -51.93 -0.30 0.49 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 LS Contribution 360.57 15.07 5.43 5.43 Total: -1.00 -32.20 360.57 -9.03 -41.23 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -7.13 Total: -1.78 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.22 Total: -7.78 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -1.25 Total: -40.50 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.07 Total: -3.66 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.20 -9.03 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567946305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.503 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds