Wall clock time and date at job start Tue Mar 31 2020 11:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48500 * 109.46983 * 269.99881 * 3 2 1 5 5 H 1.48502 * 109.46903 * 29.99547 * 3 2 1 6 6 H 1.48500 * 109.47331 * 149.99604 * 3 2 1 7 7 C 1.37878 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99584 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00051 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47112 * 180.02562 * 9 7 2 11 11 C 1.53044 * 109.45697 * 175.00034 * 10 9 7 12 12 C 1.53198 * 109.30805 * 181.38394 * 11 10 9 13 13 N 1.46916 * 108.77745 * 305.36382 * 12 11 10 14 14 C 1.34778 * 120.63103 * 233.58516 * 13 12 11 15 15 O 1.21595 * 120.00009 * 185.12102 * 14 13 12 16 16 N 1.34776 * 120.00097 * 5.12288 * 14 13 12 17 17 C 1.46504 * 120.00026 * 174.72218 * 16 14 13 18 18 C 1.52998 * 109.47139 * 184.88385 * 17 16 14 19 19 C 1.53004 * 115.55024 * 304.47068 * 18 17 16 20 20 F 1.39896 * 109.47333 * 149.38312 * 19 18 17 21 21 F 1.39896 * 109.47094 * 269.38457 * 19 18 17 22 22 C 1.53001 * 117.51731 * 90.17079 * 18 17 16 23 23 C 1.52991 * 117.50052 * 158.80194 * 18 17 16 24 24 C 1.46927 * 118.73839 * 53.86099 * 13 12 11 25 25 C 1.53042 * 109.45938 * 295.06492 * 10 9 7 26 26 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47322 * 60.00332 * 9 7 2 28 28 H 1.09001 * 109.47468 * 300.00607 * 9 7 2 29 29 H 1.09001 * 109.46083 * 55.02919 * 10 9 7 30 30 H 1.09001 * 109.49787 * 61.43623 * 11 10 9 31 31 H 1.08995 * 109.52763 * 301.35204 * 11 10 9 32 32 H 1.09007 * 109.58497 * 185.57553 * 12 11 10 33 33 H 1.08999 * 109.69963 * 65.22717 * 12 11 10 34 34 H 0.96995 * 119.99858 * 354.72673 * 16 14 13 35 35 H 1.09003 * 109.46584 * 64.88461 * 17 16 14 36 36 H 1.08999 * 109.47373 * 304.88351 * 17 16 14 37 37 H 1.09001 * 109.46905 * 29.38487 * 19 18 17 38 38 H 1.09006 * 117.49718 * 214.96979 * 22 18 17 39 39 H 1.08993 * 117.49826 * 359.97438 * 22 18 17 40 40 H 1.09003 * 117.50190 * 359.97360 * 23 18 17 41 41 H 1.08995 * 117.50468 * 144.99650 * 23 18 17 42 42 H 1.09000 * 109.58457 * 65.93014 * 24 13 12 43 43 H 1.08999 * 109.58521 * 186.34873 * 24 13 12 44 44 H 1.08997 * 109.49818 * 298.56932 * 25 10 9 45 45 H 1.08997 * 109.49328 * 58.63650 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5469 -2.6379 -0.1242 12 6 6.0510 -4.0841 -0.1588 13 7 5.5420 -4.7907 1.0245 14 6 6.3846 -5.4414 1.8510 15 8 5.9439 -6.0996 2.7736 16 7 7.7157 -5.3625 1.6550 17 6 8.6355 -5.9727 2.6184 18 6 10.0769 -5.6373 2.2303 19 6 10.4851 -6.0269 0.8081 20 9 11.4502 -5.1301 0.3376 21 9 11.0148 -7.3217 0.8132 22 6 10.6888 -4.3636 2.8170 23 6 11.1434 -5.7341 3.3228 24 6 4.0963 -4.7798 1.2863 25 6 3.6147 -3.3212 1.3078 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6800 0.8912 28 1 3.8753 -0.6803 -0.8888 29 1 3.5876 -3.1750 -0.8415 30 1 5.9826 -2.1211 0.7310 31 1 5.8375 -2.1292 -1.0433 32 1 7.1410 -4.0915 -0.1481 33 1 5.6911 -4.5771 -1.0618 34 1 8.0647 -4.9017 0.8761 35 1 8.5004 -7.0543 2.6146 36 1 8.4278 -5.5841 3.6153 37 1 9.6111 -5.9944 0.1575 38 1 11.3822 -3.8033 2.1897 39 1 10.0643 -3.7641 3.4793 40 1 10.8182 -6.0363 4.3184 41 1 12.1359 -6.0754 3.0286 42 1 3.5782 -5.3271 0.4987 43 1 3.8961 -5.2465 2.2508 44 1 4.0686 -2.7980 2.1494 45 1 2.5295 -3.2986 1.4077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591978768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:27 Heat of formation + Delta-G solvation = -112.711550 kcal Electronic energy + Delta-G solvation = -27065.462230 eV Core-core repulsion = 22947.144103 eV Total energy + Delta-G solvation = -4118.318127 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.40763 -47.38582 -40.46605 -38.58390 -37.42327 -34.52310 -33.98234 -32.12426 -30.78951 -28.96233 -28.00333 -26.43149 -24.58558 -23.05882 -22.84714 -21.72731 -20.54151 -20.09360 -19.38659 -18.39309 -17.54822 -17.52552 -17.28487 -16.69715 -16.17782 -15.58038 -15.08370 -14.56283 -14.39329 -14.31565 -14.25722 -14.01620 -13.80124 -13.65223 -13.57758 -13.33006 -12.98598 -12.80562 -12.66690 -12.39060 -12.07930 -12.00005 -11.60874 -11.53620 -11.17459 -10.96060 -10.89368 -10.86664 -10.68026 -10.39759 -10.10814 -9.83625 -9.72845 -9.54234 -9.31635 -9.09199 -8.55483 -8.37032 -6.06060 -4.03659 2.44803 3.00697 3.13936 3.24603 3.27978 3.36266 3.38946 3.69803 3.76970 3.82184 4.08333 4.19565 4.43046 4.68802 4.71593 4.87639 5.04564 5.13073 5.18383 5.22833 5.28343 5.30961 5.38656 5.42590 5.49872 5.57046 5.58262 5.70077 5.85670 6.00817 6.18612 6.21929 6.24391 6.35956 6.50543 6.77113 6.84145 6.89708 7.02774 7.20915 7.40788 7.77566 7.86737 8.51708 8.54637 8.98862 9.56781 11.07215 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.002750 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.757499 B =10180.791871 C =10718.012990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.072 4.072 11 C -0.133 4.133 12 C 0.113 3.887 13 N -0.621 5.621 14 C 0.709 3.291 15 O -0.592 6.592 16 N -0.754 5.754 17 C 0.183 3.817 18 C -0.219 4.219 19 C 0.299 3.701 20 F -0.200 7.200 21 F -0.198 7.198 22 C -0.147 4.147 23 C -0.141 4.141 24 C 0.127 3.873 25 C -0.119 4.119 26 H 0.262 0.738 27 H 0.014 0.986 28 H 0.011 0.989 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.393 0.607 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.366 -11.289 2.388 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.046 4.046 10 C -0.090 4.090 11 C -0.171 4.171 12 C -0.010 4.010 13 N -0.358 5.358 14 C 0.410 3.590 15 O -0.471 6.471 16 N -0.414 5.414 17 C 0.059 3.941 18 C -0.220 4.220 19 C 0.245 3.755 20 F -0.181 7.181 21 F -0.179 7.179 22 C -0.184 4.184 23 C -0.179 4.179 24 C 0.004 3.996 25 C -0.157 4.157 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.230 0.770 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 22.902 -11.661 3.072 25.883 hybrid contribution 0.646 1.234 -0.595 1.514 sum 23.548 -10.427 2.478 25.872 Atomic orbital electron populations 1.69913 1.06277 1.26833 1.51249 1.25035 0.94694 0.99112 0.94696 0.86808 0.80353 0.83856 0.78396 1.20405 1.21489 1.19125 1.21134 0.89407 0.94367 1.50528 0.90801 1.19611 0.97249 0.91600 0.96134 1.20996 0.91790 0.99107 0.97126 1.22068 0.98552 0.94316 1.02160 1.21675 0.97328 0.93986 0.88005 1.47378 1.07747 1.54162 1.26539 1.15771 0.80694 0.80122 0.82392 1.90911 1.76392 1.45735 1.34014 1.45292 1.04815 1.62324 1.28924 1.20522 0.82372 0.98521 0.92694 1.22773 0.96707 1.08172 0.94365 1.21049 0.87351 0.72322 0.94741 1.92981 1.67314 1.68151 1.89695 1.93007 1.88474 1.39005 1.97460 1.23218 1.02535 0.90173 1.02509 1.23022 0.97453 0.99938 0.97460 1.21779 0.77186 0.98433 1.02162 1.21999 1.02710 0.92874 0.98167 0.92782 0.96722 0.97114 0.91689 0.91968 0.91088 0.91753 0.91215 0.76977 0.90642 0.90107 0.87070 0.87205 0.87260 0.87218 0.87666 0.91802 0.89425 0.92427 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 3 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -13.99 8.94 -34.44 -0.31 -14.29 16 8 H 0.07 2.14 7.30 -52.49 -0.38 1.76 16 9 C -0.01 -0.19 3.52 -27.89 -0.10 -0.29 16 10 C -0.07 -1.27 2.10 -90.58 -0.19 -1.46 16 11 C -0.13 -1.83 5.36 -26.61 -0.14 -1.97 16 12 C 0.11 1.27 6.43 -3.71 -0.02 1.25 16 13 N -0.62 -8.48 2.97 -178.23 -0.53 -9.01 16 14 C 0.71 10.01 8.30 -86.92 -0.72 9.29 16 15 O -0.59 -10.55 15.79 5.28 0.08 -10.47 16 16 N -0.75 -7.56 5.16 -65.22 -0.34 -7.90 16 17 C 0.18 1.60 5.57 -4.04 -0.02 1.58 16 18 C -0.22 -1.51 2.06 -154.51 -0.32 -1.83 16 19 C 0.30 2.19 5.22 37.16 0.19 2.38 16 20 F -0.20 -1.68 15.90 2.25 0.04 -1.64 16 21 F -0.20 -1.81 17.22 2.25 0.04 -1.77 16 22 C -0.15 -0.91 9.61 -26.73 -0.26 -1.16 16 23 C -0.14 -0.83 9.85 -26.74 -0.26 -1.10 16 24 C 0.13 1.92 6.45 -3.49 -0.02 1.90 16 25 C -0.12 -2.08 5.21 -26.39 -0.14 -2.21 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 28 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.53 5.57 -51.92 -0.29 0.25 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.39 3.10 4.82 -40.82 -0.20 2.91 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.11 0.64 6.76 -51.93 -0.35 0.29 16 38 H 0.11 0.67 7.18 -51.93 -0.37 0.30 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.41 7.03 -51.93 -0.37 1.04 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.75 6.91 -51.93 -0.36 1.39 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -32.49 361.47 -8.46 -40.95 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.90 Total: 0.49 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -2.41 Total: -6.15 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.09 Total: -43.49 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.07 Total: -3.41 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.49 -8.46 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591978768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.760 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds