Wall clock time and date at job start Tue Mar 31 2020 11:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00053 * 2 1 4 4 H 1.48502 * 109.46925 * 269.99411 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99695 * 3 2 1 6 6 H 1.48499 * 109.47143 * 149.99682 * 3 2 1 7 7 C 1.37879 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00032 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00265 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47290 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47315 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47247 * 180.02562 * 12 11 10 14 14 O 1.21275 * 120.00488 * 359.97438 * 13 12 11 15 15 N 1.34785 * 119.99808 * 179.97438 * 13 12 11 16 16 C 1.46849 * 120.22639 * 359.97438 * 15 13 12 17 17 C 1.53800 * 109.80144 * 226.79990 * 16 15 13 18 18 N 1.45776 * 107.77380 * 308.67514 * 17 16 15 19 19 C 1.47163 * 116.16264 * 183.19138 * 18 17 16 20 20 C 1.55147 * 103.58482 * 197.70704 * 19 18 17 21 21 F 1.39893 * 110.34758 * 265.12769 * 20 19 18 22 22 F 1.39908 * 110.34218 * 142.86008 * 20 19 18 23 23 C 1.54938 * 104.93968 * 23.99754 * 20 19 18 24 24 C 1.48793 * 109.49834 * 66.16778 * 18 17 16 25 25 H 1.09003 * 110.51527 * 50.25280 * 24 18 17 26 26 C 1.47521 * 120.11352 * 179.90886 * 15 13 12 27 27 H 0.97000 * 119.99923 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46743 * 60.00638 * 9 7 2 29 29 H 1.09002 * 109.46944 * 300.00971 * 9 7 2 30 30 H 1.09003 * 109.46659 * 60.00059 * 10 9 7 31 31 H 1.08996 * 109.47131 * 300.00647 * 10 9 7 32 32 H 1.09004 * 109.47381 * 59.99820 * 11 10 9 33 33 H 1.09010 * 109.47349 * 300.00166 * 11 10 9 34 34 H 1.09000 * 109.47746 * 59.99769 * 12 11 10 35 35 H 1.09008 * 109.46864 * 299.99612 * 12 11 10 36 36 H 1.09002 * 109.40527 * 106.71722 * 16 15 13 37 37 H 1.08997 * 109.40293 * 346.88077 * 16 15 13 38 38 H 1.09001 * 109.80458 * 68.24494 * 17 16 15 39 39 H 1.09003 * 109.80198 * 189.05077 * 17 16 15 40 40 H 1.09003 * 110.59946 * 316.23723 * 19 18 17 41 41 H 1.09002 * 110.59666 * 79.18533 * 19 18 17 42 42 H 1.09006 * 110.47284 * 243.68269 * 23 20 19 43 43 H 1.09003 * 110.58609 * 121.13410 * 23 20 19 44 44 H 1.08999 * 110.05226 * 10.79436 * 26 15 13 45 45 H 1.09000 * 110.02148 * 249.33557 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5514 -2.6366 0.0022 12 6 6.0615 -4.0791 0.0015 13 6 7.5684 -4.0791 0.0033 14 8 8.1749 -3.0288 0.0046 15 7 8.2423 -5.2464 0.0035 16 6 7.5131 -6.5210 0.0025 17 6 8.1132 -7.4654 1.0576 18 7 9.5530 -7.5224 0.8364 19 6 10.3075 -8.4385 1.7065 20 6 11.7734 -7.9503 1.5657 21 9 12.4405 -8.6907 0.5840 22 9 12.4402 -8.0535 2.7913 23 6 11.6606 -6.4657 1.1371 24 6 10.1523 -6.1907 1.1218 25 1 9.8223 -5.8236 2.0936 26 6 9.7175 -5.2493 0.0033 27 1 -0.4850 0.8401 -0.0004 28 1 3.8744 -0.6802 0.8912 29 1 3.8752 -0.6803 -0.8888 30 1 3.6585 -3.1502 -0.8893 31 1 3.6577 -3.1506 0.8906 32 1 5.9141 -2.1231 0.8927 33 1 5.9156 -2.1224 -0.8873 34 1 5.6989 -4.5923 -0.8892 35 1 5.6974 -4.5936 0.8908 36 1 7.5907 -6.9819 -0.9822 37 1 6.4640 -6.3381 0.2351 38 1 7.9082 -7.0810 2.0568 39 1 7.6826 -8.4610 0.9497 40 1 9.9713 -8.3503 2.7396 41 1 10.2103 -9.4664 1.3569 42 1 12.0844 -6.3225 0.1431 43 1 12.1588 -5.8193 1.8597 44 1 10.0933 -4.2442 0.1948 45 1 10.0898 -5.6117 -0.9549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592810372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:50 Heat of formation + Delta-G solvation = -135.766097 kcal Electronic energy + Delta-G solvation = -26489.871149 eV Core-core repulsion = 22370.553301 eV Total energy + Delta-G solvation = -4119.317848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.38049 -47.50722 -40.85659 -39.10811 -35.65530 -35.10518 -33.20821 -32.59386 -30.81240 -29.66892 -28.88617 -26.39580 -24.85060 -23.62509 -22.33999 -21.87487 -20.99508 -20.06487 -19.16472 -18.01570 -17.50201 -17.24818 -16.67049 -16.55115 -16.09839 -15.99225 -15.44607 -15.30411 -14.93104 -14.75521 -14.42400 -14.20804 -13.84951 -13.78936 -13.61104 -13.38117 -13.06461 -12.66815 -12.58236 -12.49191 -12.32731 -12.12189 -11.98199 -11.76674 -11.70523 -11.48799 -11.32299 -11.13420 -10.74567 -10.56153 -9.98134 -9.83715 -9.66449 -9.45748 -9.40350 -9.13141 -8.89094 -8.50360 -6.01525 -3.99029 2.53636 2.55961 2.92372 3.22080 3.26675 3.34567 3.41644 3.47436 3.69021 3.96910 4.24495 4.29004 4.43013 4.49162 4.54351 4.66151 4.67382 4.75283 4.86439 4.91182 5.07039 5.11331 5.16514 5.20349 5.23765 5.29426 5.33447 5.38360 5.54949 5.72477 5.96868 5.99389 6.07180 6.15095 6.27151 6.39070 6.65647 6.79151 6.96973 7.13537 7.36593 7.49422 7.83694 8.05599 8.57132 9.03319 9.61853 11.11917 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.036753 B = 0.002070 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.666173 B =13520.724513 C =13871.920953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.106 4.106 12 C -0.138 4.138 13 C 0.515 3.485 14 O -0.534 6.534 15 N -0.623 5.623 16 C 0.114 3.886 17 C 0.040 3.960 18 N -0.518 5.518 19 C 0.010 3.990 20 C 0.284 3.716 21 F -0.187 7.187 22 F -0.194 7.194 23 C -0.152 4.152 24 C 0.047 3.953 25 H 0.071 0.929 26 C 0.130 3.870 27 H 0.262 0.738 28 H 0.015 0.985 29 H 0.011 0.989 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.371 -20.611 2.931 32.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.178 4.178 13 C 0.304 3.696 14 O -0.410 6.410 15 N -0.358 5.358 16 C -0.010 4.010 17 C -0.089 4.089 18 N -0.243 5.243 19 C -0.119 4.119 20 C 0.247 3.753 21 F -0.168 7.168 22 F -0.175 7.175 23 C -0.191 4.191 24 C -0.062 4.062 25 H 0.089 0.911 26 C 0.008 3.992 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 24.580 -20.112 2.408 31.851 hybrid contribution 0.346 0.763 0.906 1.234 sum 24.927 -19.349 3.314 31.728 Atomic orbital electron populations 1.69917 1.06302 1.26831 1.51443 1.25047 0.94743 0.99239 0.94623 0.86772 0.80417 0.83548 0.78547 1.20308 1.21464 1.18915 1.21177 0.89650 0.94366 1.50538 0.91115 1.19577 0.96920 0.92482 0.96316 1.21472 0.91635 0.99956 1.00909 1.21498 0.97255 0.92773 1.02918 1.21820 0.90161 1.01797 1.04016 1.21152 0.90990 0.82665 0.74762 1.90695 1.70468 1.30872 1.48963 1.48292 1.06275 1.06239 1.75030 1.21843 0.96326 0.83180 0.99615 1.22518 0.86841 1.01083 0.98426 1.64083 1.04193 1.04848 1.51161 1.23761 0.90276 0.99695 0.98186 1.21868 0.87814 0.92437 0.73153 1.93042 1.82600 1.78995 1.62149 1.93040 1.82876 1.97011 1.44583 1.23207 0.97192 0.92875 1.05813 1.22897 0.92949 0.90905 0.99462 0.91122 1.21516 0.80068 1.00078 0.97580 0.92814 0.96645 0.97049 0.92831 0.92882 0.91827 0.91750 0.88857 0.89040 0.90358 0.88454 0.93385 0.88579 0.90725 0.87185 0.87350 0.87768 0.88158 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.23 13.96 55.43 0.77 -27.46 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -1.96 5.15 -26.73 -0.14 -2.10 16 11 C -0.11 -1.74 4.50 -26.74 -0.12 -1.86 16 12 C -0.14 -1.65 4.06 -27.89 -0.11 -1.77 16 13 C 0.51 6.58 7.69 -10.98 -0.08 6.50 16 14 O -0.53 -8.95 15.39 5.56 0.09 -8.86 16 15 N -0.62 -5.92 3.03 -172.38 -0.52 -6.44 16 16 C 0.11 0.74 6.43 -3.44 -0.02 0.72 16 17 C 0.04 0.22 5.97 -4.02 -0.02 0.20 16 18 N -0.52 -3.33 4.84 -224.00 -1.08 -4.42 16 19 C 0.01 0.06 6.28 -2.54 -0.02 0.04 16 20 C 0.28 2.01 2.72 -24.57 -0.07 1.94 16 21 F -0.19 -1.63 17.12 2.25 0.04 -1.59 16 22 F -0.19 -1.61 17.12 2.25 0.04 -1.57 16 23 C -0.15 -0.91 6.32 -25.54 -0.16 -1.07 16 24 C 0.05 0.32 2.70 -66.75 -0.18 0.14 16 25 H 0.07 0.53 7.98 -51.93 -0.41 0.11 16 26 C 0.13 1.10 6.04 -3.73 -0.02 1.08 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 29 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 33 H 0.06 1.11 8.10 -51.92 -0.42 0.69 16 34 H 0.09 0.96 8.04 -51.93 -0.42 0.54 16 35 H 0.09 0.92 7.56 -51.92 -0.39 0.53 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.54 5.97 -51.93 -0.31 0.23 16 38 H 0.05 0.28 7.98 -51.93 -0.41 -0.13 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 41 H 0.11 0.55 8.13 -51.93 -0.42 0.13 16 42 H 0.11 0.59 7.89 -51.93 -0.41 0.18 16 43 H 0.10 0.52 8.06 -51.93 -0.42 0.11 16 44 H 0.10 0.98 7.05 -51.93 -0.37 0.61 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -34.26 361.45 -8.68 -42.93 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -7.29 Total: -5.46 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.49 Total: -10.16 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.83 Total: -38.31 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.26 -8.68 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592810372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.833 kcal (2) G-P(sol) polarization free energy of solvation -34.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds