Wall clock time and date at job start Tue Mar 31 2020 11:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00300 * 2 1 4 4 H 1.48500 * 109.47526 * 239.99917 * 3 2 1 5 5 H 1.48505 * 109.47298 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47053 * 120.00177 * 3 2 1 7 7 C 1.37880 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99759 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99951 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49568 * 59.93830 * 9 7 2 11 11 C 1.53042 * 109.49454 * 179.97438 * 9 7 2 12 12 C 1.53039 * 109.53403 * 181.34878 * 11 9 7 13 13 C 1.53187 * 109.31533 * 298.63516 * 12 11 9 14 14 N 1.46921 * 108.77682 * 54.63525 * 13 12 11 15 15 C 1.34780 * 120.63337 * 126.37244 * 14 13 12 16 16 O 1.21579 * 119.99920 * 185.22983 * 15 14 13 17 17 N 1.34776 * 119.99663 * 5.22299 * 15 14 13 18 18 C 1.46497 * 119.99714 * 175.01986 * 17 15 14 19 19 C 1.53001 * 109.47182 * 180.02562 * 18 17 15 20 20 H 1.09003 * 110.53815 * 307.61610 * 19 18 17 21 21 C 1.54893 * 110.48423 * 70.22191 * 19 18 17 22 22 C 1.54895 * 102.74434 * 156.62263 * 21 19 18 23 23 C 1.54263 * 104.19625 * 322.06094 * 22 21 19 24 24 F 1.39899 * 110.02964 * 264.32475 * 23 22 21 25 25 F 1.39894 * 110.03235 * 142.89876 * 23 22 21 26 26 C 1.53874 * 106.60124 * 23.60865 * 23 22 21 27 27 C 1.46932 * 118.73890 * 306.64420 * 14 13 12 28 28 H 0.97010 * 119.99866 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46157 * 61.32979 * 11 9 7 30 30 H 1.09003 * 109.44734 * 301.35872 * 11 9 7 31 31 H 1.09007 * 109.49429 * 178.67951 * 12 11 9 32 32 H 1.09001 * 109.52665 * 58.60652 * 12 11 9 33 33 H 1.09011 * 109.58614 * 294.84955 * 13 12 11 34 34 H 1.08996 * 109.70975 * 174.49946 * 13 12 11 35 35 H 0.97003 * 120.00252 * 355.02530 * 17 15 14 36 36 H 1.08999 * 109.47471 * 60.00529 * 18 17 15 37 37 H 1.09000 * 109.47053 * 299.99967 * 18 17 15 38 38 H 1.08993 * 110.75994 * 38.31180 * 21 19 18 39 39 H 1.08996 * 110.75983 * 274.93270 * 21 19 18 40 40 H 1.08998 * 110.48419 * 203.37666 * 22 21 19 41 41 H 1.08998 * 110.48716 * 80.73795 * 22 21 19 42 42 H 1.08994 * 110.03226 * 119.28894 * 26 23 22 43 43 H 1.09004 * 110.03063 * 240.71955 * 26 23 22 44 44 H 1.08997 * 109.58815 * 173.13980 * 27 14 13 45 45 H 1.09000 * 109.58707 * 293.56861 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6229 -2.5566 -0.8896 11 6 2.2448 -3.6629 -0.0018 12 6 1.4808 -4.9885 -0.0358 13 6 0.6059 -5.1012 1.2166 14 7 -0.2526 -3.9120 1.3025 15 6 -1.5890 -4.0371 1.4245 16 8 -2.2969 -3.0490 1.3990 17 7 -2.1406 -5.2576 1.5747 18 6 -3.5797 -5.3863 1.8165 19 6 -3.9443 -6.8662 1.9494 20 1 -3.5691 -7.4307 1.0957 21 6 -3.3830 -7.4461 3.2716 22 6 -4.3072 -8.6617 3.5310 23 6 -5.7027 -8.1780 3.0855 24 9 -6.4213 -7.7064 4.1893 25 9 -6.3990 -9.2244 2.4713 26 6 -5.4719 -7.0364 2.0800 27 6 0.3729 -2.5837 1.2467 28 1 -0.4850 0.8401 -0.0004 29 1 2.8563 -3.6192 0.8994 30 1 2.8866 -3.5911 -0.8800 31 1 2.1895 -5.8163 -0.0604 32 1 0.8503 -5.0229 -0.9243 33 1 1.2401 -5.1588 2.1014 34 1 -0.0139 -5.9955 1.1528 35 1 -1.5847 -6.0509 1.5227 36 1 -4.1288 -4.9501 0.9820 37 1 -3.8417 -4.8638 2.7366 38 1 -3.4664 -6.7184 4.0787 39 1 -2.3492 -7.7670 3.1445 40 1 -4.3124 -8.9177 4.5905 41 1 -3.9907 -9.5161 2.9328 42 1 -5.9025 -7.2976 1.1133 43 1 -5.9198 -6.1149 2.4520 44 1 -0.4006 -1.8172 1.1999 45 1 0.9876 -2.4317 2.1339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595594233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:26 Heat of formation + Delta-G solvation = -145.860423 kcal Electronic energy + Delta-G solvation = -27138.675499 eV Core-core repulsion = 23018.919929 eV Total energy + Delta-G solvation = -4119.755570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.19275 -47.26585 -39.83073 -38.25004 -36.73666 -34.15807 -33.21724 -31.75220 -30.17246 -29.64663 -28.52203 -25.32754 -24.99126 -23.67339 -21.82402 -21.46632 -20.79631 -20.05268 -18.76031 -17.97180 -17.56187 -17.02787 -16.46931 -16.16639 -15.62280 -15.15853 -14.76806 -14.55496 -14.45550 -14.26881 -13.81259 -13.75398 -13.64276 -13.59022 -13.31967 -13.05346 -12.61178 -12.58176 -12.30006 -12.12690 -12.01717 -11.85738 -11.75644 -11.22691 -11.07782 -11.00452 -10.96682 -10.88886 -10.51752 -10.41281 -10.21813 -9.86896 -9.44975 -9.08254 -8.94408 -8.77345 -8.40071 -7.64026 -5.96314 -4.05814 3.11316 3.33647 3.39491 3.40597 3.43705 3.59887 3.81544 3.85556 4.00364 4.37618 4.46943 4.58075 4.64650 4.77317 4.87460 4.96592 5.05726 5.25831 5.28245 5.33185 5.38949 5.48213 5.53140 5.57210 5.60928 5.68834 5.83091 5.93217 5.97699 6.15088 6.30906 6.58696 6.66779 6.78270 6.80336 6.99423 7.04507 7.36325 7.50602 7.75772 7.94636 8.08349 8.42711 8.58375 8.97657 9.25407 9.59653 11.08467 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.002636 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.004277 B =10621.480440 C =11306.689161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.116 3.884 14 N -0.622 5.622 15 C 0.699 3.301 16 O -0.581 6.581 17 N -0.757 5.757 18 C 0.148 3.852 19 C -0.101 4.101 20 H 0.092 0.908 21 C -0.119 4.119 22 C -0.161 4.161 23 C 0.281 3.719 24 F -0.198 7.198 25 F -0.201 7.201 26 C -0.157 4.157 27 C 0.129 3.871 28 H 0.264 0.736 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.390 0.610 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 -19.622 5.761 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.401 3.599 16 O -0.458 6.458 17 N -0.417 5.417 18 C 0.023 3.977 19 C -0.120 4.120 20 H 0.110 0.890 21 C -0.156 4.156 22 C -0.199 4.199 23 C 0.244 3.756 24 F -0.179 7.179 25 F -0.182 7.182 26 C -0.196 4.196 27 C 0.008 3.992 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.226 0.774 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.141 0.859 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.642 -18.729 5.780 21.037 hybrid contribution 0.556 0.320 -0.004 0.641 sum -7.086 -18.409 5.776 20.554 Atomic orbital electron populations 1.69890 1.05680 1.26901 1.49064 1.25058 0.94880 0.99212 0.94883 0.86664 0.79570 0.83256 0.78533 1.20324 1.21273 1.20277 1.21030 0.92822 0.90148 1.52123 0.92464 1.18901 0.92616 0.92168 0.94300 0.95386 1.21615 0.98553 0.94082 1.00509 1.21946 0.98606 0.99148 0.97488 1.21477 0.93337 0.87475 0.98505 1.47785 1.03530 1.08846 1.75753 1.15946 0.82615 0.83107 0.78260 1.90937 1.60402 1.36643 1.57830 1.45277 1.08680 1.07424 1.80338 1.21080 0.81223 0.93468 1.01904 1.22201 0.93774 0.96975 0.99065 0.88996 1.22616 0.99291 0.96228 0.97508 1.23372 0.91914 1.00473 1.04167 1.21836 0.87048 0.84723 0.81944 1.93026 1.80656 1.88808 1.55423 1.93012 1.81901 1.60069 1.83248 1.23136 0.97922 0.98478 1.00024 1.22094 0.98381 0.80578 0.98153 0.92606 0.93208 0.93080 0.92366 0.92209 0.92210 0.92260 0.77424 0.91421 0.91558 0.89881 0.89770 0.88870 0.88360 0.88301 0.88041 0.85887 0.94295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 11.39 55.43 0.63 -25.11 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.13 8.57 -34.44 -0.29 -14.42 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.97 2.24 -91.87 -0.21 0.76 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.15 5.11 -26.69 -0.14 -2.28 16 12 C -0.13 -2.07 6.08 -26.61 -0.16 -2.24 16 13 C 0.12 1.71 6.39 -3.72 -0.02 1.69 16 14 N -0.62 -12.25 2.98 -178.76 -0.53 -12.79 16 15 C 0.70 13.89 8.30 -86.92 -0.72 13.17 16 16 O -0.58 -14.46 15.77 5.30 0.08 -14.38 16 17 N -0.76 -10.38 5.36 -65.23 -0.35 -10.73 16 18 C 0.15 1.71 4.96 -4.04 -0.02 1.69 16 19 C -0.10 -0.77 2.89 -88.96 -0.26 -1.03 16 20 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 21 C -0.12 -0.80 6.19 -24.73 -0.15 -0.95 16 22 C -0.16 -1.04 6.40 -25.07 -0.16 -1.20 16 23 C 0.28 2.41 2.57 -25.61 -0.07 2.34 16 24 F -0.20 -2.08 17.04 2.25 0.04 -2.04 16 25 F -0.20 -2.00 17.04 2.25 0.04 -1.96 16 26 C -0.16 -1.21 6.07 -25.62 -0.16 -1.36 16 27 C 0.13 3.11 5.39 -3.93 -0.02 3.09 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.06 0.66 5.64 -51.93 -0.29 0.37 16 35 H 0.39 4.17 5.93 -40.82 -0.24 3.93 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.83 8.02 -51.93 -0.42 0.41 16 38 H 0.08 0.63 7.96 -51.93 -0.41 0.22 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.56 8.11 -51.93 -0.42 0.14 16 41 H 0.10 0.53 8.12 -51.93 -0.42 0.10 16 42 H 0.10 0.68 8.02 -51.93 -0.42 0.27 16 43 H 0.10 0.80 7.71 -51.93 -0.40 0.40 16 44 H 0.12 3.52 5.11 -51.93 -0.27 3.25 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -32.69 358.98 -9.23 -41.92 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.06 Total: 2.54 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.47 Total: 0.90 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.25 Total: -48.63 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.08 Total: -14.38 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.08 Total: -4.01 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.69 -9.23 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595594233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.941 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds