Wall clock time and date at job start Tue Mar 31 2020 11:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00319 * 2 1 4 4 H 1.48502 * 109.46845 * 270.00187 * 3 2 1 5 5 H 1.48504 * 109.46651 * 29.99973 * 3 2 1 6 6 H 1.48502 * 109.47126 * 149.99865 * 3 2 1 7 7 C 1.37884 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00068 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99975 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.52655 * 60.07571 * 9 7 2 11 11 C 1.53040 * 109.49945 * 180.15960 * 9 7 2 12 12 C 1.53040 * 109.54113 * 181.31303 * 11 9 7 13 13 C 1.53194 * 109.31216 * 298.63597 * 12 11 9 14 14 N 1.46927 * 108.77439 * 54.63256 * 13 12 11 15 15 C 1.34776 * 120.62473 * 126.37304 * 14 13 12 16 16 O 1.21591 * 119.99720 * 174.98544 * 15 14 13 17 17 N 1.34775 * 120.00361 * 354.97965 * 15 14 13 18 18 C 1.46495 * 120.00016 * 185.07372 * 17 15 14 19 19 C 1.53004 * 109.47161 * 180.02562 * 18 17 15 20 20 H 1.08998 * 110.66873 * 51.76676 * 19 18 17 21 21 C 1.54886 * 110.75520 * 288.33155 * 19 18 17 22 22 C 1.54266 * 104.19580 * 203.74224 * 21 19 18 23 23 C 1.53874 * 106.59762 * 23.60943 * 22 21 19 24 24 F 1.39902 * 110.03399 * 240.71584 * 23 22 21 25 25 F 1.39902 * 110.07460 * 119.30640 * 23 22 21 26 26 C 1.54272 * 106.59828 * 0.02562 * 23 22 21 27 27 C 1.46928 * 118.74160 * 306.38939 * 14 13 12 28 28 H 0.97001 * 119.99940 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.45974 * 301.33902 * 11 9 7 30 30 H 1.09005 * 109.45888 * 61.29063 * 11 9 7 31 31 H 1.08998 * 109.49509 * 178.68500 * 12 11 9 32 32 H 1.08999 * 109.52185 * 58.60234 * 12 11 9 33 33 H 1.09002 * 109.58175 * 294.84936 * 13 12 11 34 34 H 1.08992 * 109.58753 * 174.42303 * 13 12 11 35 35 H 0.96996 * 119.99658 * 5.08248 * 17 15 14 36 36 H 1.09005 * 109.47685 * 300.00668 * 18 17 15 37 37 H 1.09005 * 109.47041 * 60.00561 * 18 17 15 38 38 H 1.09006 * 110.48642 * 322.41811 * 21 19 18 39 39 H 1.09001 * 110.48732 * 85.05967 * 21 19 18 40 40 H 1.09000 * 110.03181 * 264.32658 * 22 21 19 41 41 H 1.08999 * 110.03558 * 142.89155 * 22 21 19 42 42 H 1.09002 * 110.48156 * 217.71063 * 26 23 22 43 43 H 1.08998 * 110.59905 * 95.12947 * 26 23 22 44 44 H 1.09004 * 109.58617 * 293.82380 * 27 14 13 45 45 H 1.08994 * 109.58433 * 173.39967 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8755 -0.6822 0.8909 11 6 4.0224 -2.6367 -0.0047 12 6 5.5524 -2.6381 0.0289 13 6 6.0872 -1.9316 -1.2208 14 7 5.4865 -0.5931 -1.3009 15 6 6.2632 0.5020 -1.4185 16 8 5.7535 1.5947 -1.5756 17 7 7.6048 0.3861 -1.3620 18 6 8.4450 1.5860 -1.3780 19 6 9.9179 1.1783 -1.3053 20 1 10.1498 0.4359 -2.0689 21 6 10.2717 0.6485 0.1065 22 6 11.7949 0.8644 0.2209 23 6 12.1548 1.9885 -0.7663 24 9 13.0567 1.5140 -1.7248 25 9 12.7128 3.0714 -0.0784 26 6 10.8377 2.4169 -1.4457 27 6 4.0232 -0.4713 -1.2500 28 1 -0.4850 0.8401 0.0004 29 1 3.6394 -3.1605 0.8711 30 1 3.6785 -3.1407 -0.9081 31 1 5.9149 -3.6658 0.0490 32 1 5.8976 -2.1130 0.9195 33 1 5.8197 -2.5059 -2.1078 34 1 7.1714 -1.8422 -1.1541 35 1 8.0139 -0.4918 -1.3108 36 1 8.2673 2.1419 -2.2987 37 1 8.1987 2.2136 -0.5215 38 1 9.7467 1.2209 0.8714 39 1 10.0294 -0.4111 0.1881 40 1 12.3229 -0.0508 -0.0468 41 1 12.0545 1.1624 1.2367 42 1 11.0084 2.6475 -2.4973 43 1 10.4035 3.2754 -0.9335 44 1 3.5875 -0.9265 -2.1394 45 1 3.7457 0.5817 -1.2026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595594236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:36 Heat of formation + Delta-G solvation = -138.765425 kcal Electronic energy + Delta-G solvation = -27380.128246 eV Core-core repulsion = 23260.680338 eV Total energy + Delta-G solvation = -4119.447908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.27006 -47.34118 -40.14802 -38.39660 -37.03124 -34.42768 -33.27834 -31.95279 -30.64073 -30.03980 -28.65057 -25.49344 -25.23845 -23.85127 -22.07531 -21.44710 -20.98588 -20.12465 -18.99291 -18.11352 -17.78212 -17.08533 -16.79606 -16.56766 -15.83630 -15.35872 -14.97261 -14.71542 -14.68374 -14.22289 -14.02761 -13.88441 -13.83074 -13.70711 -13.66837 -13.10355 -12.97643 -12.77897 -12.43448 -12.38452 -12.20287 -12.06337 -11.84328 -11.39625 -11.28305 -11.16984 -11.10323 -11.05963 -10.64250 -10.41313 -10.11037 -9.83337 -9.72421 -9.24825 -9.11229 -9.01772 -8.58525 -7.98757 -6.10082 -4.11758 2.85078 3.34047 3.39905 3.47258 3.49803 3.52248 3.59358 3.72160 3.91358 4.12820 4.43471 4.48480 4.53900 4.69433 4.77947 4.85598 4.94926 5.06558 5.17100 5.22514 5.28609 5.32798 5.38921 5.42917 5.50202 5.58965 5.67169 5.75344 5.82975 5.95446 6.07874 6.14375 6.37647 6.51340 6.56104 6.59065 6.71544 6.85543 7.10119 7.29316 7.44409 7.73197 8.23179 8.48137 8.90250 8.93293 9.51603 11.01866 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.003048 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.940397 B = 9185.199759 C = 9867.680313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.882 3.118 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.077 0.923 9 C 0.004 3.996 10 H 0.030 0.970 11 C -0.100 4.100 12 C -0.136 4.136 13 C 0.116 3.884 14 N -0.624 5.624 15 C 0.701 3.299 16 O -0.592 6.592 17 N -0.753 5.753 18 C 0.148 3.852 19 C -0.103 4.103 20 H 0.093 0.907 21 C -0.118 4.118 22 C -0.164 4.164 23 C 0.281 3.719 24 F -0.199 7.199 25 F -0.200 7.200 26 C -0.154 4.154 27 C 0.120 3.880 28 H 0.265 0.735 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.393 0.607 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.317 -1.452 -1.676 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.711 3.289 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.095 0.905 9 C -0.015 4.015 10 H 0.048 0.952 11 C -0.137 4.137 12 C -0.175 4.175 13 C -0.007 4.007 14 N -0.361 5.361 15 C 0.403 3.597 16 O -0.470 6.470 17 N -0.412 5.412 18 C 0.023 3.977 19 C -0.122 4.122 20 H 0.112 0.888 21 C -0.156 4.156 22 C -0.202 4.202 23 C 0.245 3.755 24 F -0.180 7.180 25 F -0.181 7.181 26 C -0.192 4.192 27 C -0.002 4.002 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.229 0.771 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 24.793 -0.506 -1.789 24.863 hybrid contribution 0.846 0.590 -0.054 1.033 sum 25.639 0.084 -1.843 25.705 Atomic orbital electron populations 1.69891 1.06294 1.27163 1.50028 1.25048 0.94758 0.99137 0.94043 0.86959 0.79496 0.83351 0.79044 1.19828 1.22405 1.18978 1.20954 0.88210 0.94608 1.51703 0.90472 1.19504 0.96771 0.92172 0.93101 0.95233 1.21427 0.91886 0.98901 1.01533 1.21991 0.98773 0.99365 0.97326 1.21556 0.96076 0.84071 0.99041 1.47672 1.08003 1.04344 1.76058 1.15930 0.80981 0.84686 0.78113 1.90912 1.73107 1.25690 1.57262 1.45222 1.04940 1.09305 1.81779 1.21066 0.86566 0.87291 1.02753 1.22350 0.94356 0.97147 0.98354 0.88842 1.22466 0.93363 1.02809 0.96938 1.23184 0.98805 0.98147 1.00029 1.21817 0.85523 0.83986 0.84167 1.93022 1.70787 1.88620 1.65585 1.93023 1.87440 1.57445 1.80155 1.23321 0.92557 1.00043 1.03306 1.22502 0.74489 1.02410 1.00750 0.92508 0.92243 0.92489 0.91732 0.92050 0.91541 0.91797 0.77060 0.91277 0.91365 0.89901 0.89943 0.88670 0.88596 0.88456 0.87744 0.91784 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 3 Si 0.88 23.38 24.31 -169.99 -4.13 19.25 16 4 H -0.27 -7.33 6.92 56.52 0.39 -6.94 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.26 -7.02 6.53 56.52 0.37 -6.66 16 7 C -0.52 -14.23 9.15 -34.44 -0.31 -14.55 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.00 0.10 1.84 -91.65 -0.17 -0.07 16 10 H 0.03 0.72 7.21 -51.93 -0.37 0.35 16 11 C -0.10 -1.81 5.11 -26.69 -0.14 -1.95 16 12 C -0.14 -1.88 6.08 -26.61 -0.16 -2.04 16 13 C 0.12 1.52 6.43 -3.71 -0.02 1.50 16 14 N -0.62 -11.31 2.97 -178.49 -0.53 -11.84 16 15 C 0.70 12.86 8.30 -86.92 -0.72 12.14 16 16 O -0.59 -13.62 15.79 5.29 0.08 -13.54 16 17 N -0.75 -9.38 5.39 -65.22 -0.35 -9.73 16 18 C 0.15 1.54 5.12 -4.04 -0.02 1.52 16 19 C -0.10 -0.71 2.91 -88.62 -0.26 -0.97 16 20 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 21 C -0.12 -0.73 6.20 -25.07 -0.16 -0.88 16 22 C -0.16 -1.00 6.50 -25.61 -0.17 -1.16 16 23 C 0.28 2.24 2.57 -25.61 -0.07 2.17 16 24 F -0.20 -1.88 17.04 2.25 0.04 -1.84 16 25 F -0.20 -1.95 17.04 2.25 0.04 -1.91 16 26 C -0.15 -1.06 5.85 -25.06 -0.15 -1.21 16 27 C 0.12 2.67 5.09 -3.71 -0.02 2.65 16 28 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.61 5.56 -51.93 -0.29 0.32 16 35 H 0.39 3.69 5.93 -40.82 -0.24 3.45 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.79 7.99 -51.93 -0.41 0.37 16 38 H 0.08 0.57 7.94 -51.93 -0.41 0.15 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.50 8.02 -51.93 -0.42 0.09 16 41 H 0.10 0.54 8.02 -51.93 -0.42 0.13 16 42 H 0.10 0.62 8.11 -51.93 -0.42 0.20 16 43 H 0.10 0.70 8.03 -51.93 -0.42 0.28 16 44 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.08 2.00 2.35 -51.93 -0.12 1.88 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -34.39 352.37 -8.15 -42.55 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.93 Total: -0.73 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.46 Total: -0.83 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.11 Total: -48.24 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.08 Total: -13.54 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.08 Total: -3.76 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.13 Total: 19.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.39 -8.15 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595594236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.217 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds