Wall clock time and date at job start Tue Mar 31 2020 10:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00181 * 2 1 4 4 H 1.48496 * 109.47320 * 274.99415 * 3 2 1 5 5 H 1.48498 * 109.47228 * 35.00067 * 3 2 1 6 6 H 1.48504 * 109.46773 * 154.99304 * 3 2 1 7 7 C 1.37876 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00666 * 175.12557 * 7 2 1 9 9 C 1.50698 * 119.99982 * 355.12820 * 7 2 1 10 10 H 1.08997 * 109.50276 * 305.33474 * 9 7 2 11 11 C 1.53040 * 109.50095 * 185.23623 * 9 7 2 12 12 C 1.53039 * 109.53984 * 178.68386 * 11 9 7 13 13 C 1.52763 * 109.38321 * 61.23933 * 12 11 9 14 14 N 1.46920 * 109.00958 * 305.58885 * 13 12 11 15 15 C 1.34776 * 120.63003 * 233.58073 * 14 13 12 16 16 O 1.21591 * 119.99758 * 184.74787 * 15 14 13 17 17 N 1.34772 * 120.00445 * 4.75326 * 15 14 13 18 18 C 1.46500 * 120.00441 * 174.89254 * 17 15 14 19 19 C 1.53005 * 109.47083 * 179.97438 * 18 17 15 20 20 H 1.09001 * 110.01132 * 53.61282 * 19 18 17 21 21 C 1.54265 * 110.02937 * 175.00081 * 19 18 17 22 22 C 1.54896 * 104.19243 * 142.89842 * 21 19 18 23 23 C 1.54888 * 102.74560 * 322.05863 * 22 21 19 24 24 C 1.53870 * 110.03614 * 292.17142 * 19 18 17 25 25 F 1.39901 * 110.03121 * 359.97438 * 24 19 18 26 26 F 1.39899 * 110.03252 * 121.42596 * 24 19 18 27 27 C 1.46925 * 118.74039 * 53.31115 * 14 13 12 28 28 H 0.97003 * 119.99646 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.45958 * 298.70557 * 11 9 7 30 30 H 1.09000 * 109.45957 * 58.67542 * 11 9 7 31 31 H 1.09002 * 109.50118 * 181.31783 * 12 11 9 32 32 H 1.08999 * 109.49668 * 301.41433 * 12 11 9 33 33 H 1.09003 * 109.50759 * 185.70535 * 13 12 11 34 34 H 1.09003 * 109.43279 * 65.42503 * 13 12 11 35 35 H 0.97010 * 119.99558 * 354.89580 * 17 15 14 36 36 H 1.09000 * 109.46540 * 60.00825 * 18 17 15 37 37 H 1.08997 * 109.46963 * 300.00135 * 18 17 15 38 38 H 1.08996 * 110.49047 * 261.57532 * 21 19 18 39 39 H 1.08999 * 110.48400 * 24.22267 * 21 19 18 40 40 H 1.09003 * 110.75275 * 80.37506 * 22 21 19 41 41 H 1.08999 * 110.75391 * 203.74390 * 22 21 19 42 42 H 1.08997 * 110.48176 * 156.62381 * 23 22 21 43 43 H 1.08997 * 110.48575 * 279.12921 * 23 22 21 44 44 H 1.08998 * 109.58727 * 66.42183 * 27 14 13 45 45 H 1.08998 * 109.58900 * 186.85509 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1074 -1.3947 5 1 1.5035 2.6199 0.8030 6 1 3.5955 1.4119 0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1959 -0.0789 9 6 1.2551 -2.4967 0.1120 10 1 0.6221 -2.4776 0.9991 11 6 2.2526 -3.6523 0.2202 12 6 1.4925 -4.9726 0.3664 13 6 0.6241 -5.1972 -0.8701 14 7 -0.2370 -4.0237 -1.0698 15 6 -1.5723 -4.1639 -1.1871 16 8 -2.2654 -3.1968 -1.4379 17 7 -2.1395 -5.3758 -1.0262 18 6 -3.5982 -5.5100 -1.0423 19 6 -3.9776 -6.9784 -0.8405 20 1 -3.5015 -7.3664 0.0600 21 6 -5.5100 -7.1179 -0.7300 22 6 -5.8244 -8.4454 -1.4636 23 6 -4.8340 -8.4208 -2.6542 24 6 -3.5479 -7.8069 -2.0639 25 9 -2.9338 -6.9801 -3.0107 26 9 -2.6690 -8.8218 -1.6706 27 6 0.3845 -2.6939 -1.1332 28 1 -0.4850 0.8401 -0.0004 29 1 2.8688 -3.6856 -0.6784 30 1 2.8895 -3.5018 1.0919 31 1 2.2036 -5.7926 0.4670 32 1 0.8574 -4.9306 1.2512 33 1 0.0063 -6.0834 -0.7249 34 1 1.2635 -5.3339 -1.7423 35 1 -1.5817 -6.1594 -0.8996 36 1 -3.9843 -5.1639 -2.0011 37 1 -4.0272 -4.9099 -0.2398 38 1 -5.8132 -7.1785 0.3152 39 1 -6.0057 -6.2823 -1.2242 40 1 -5.6289 -9.3002 -0.8160 41 1 -6.8549 -8.4560 -1.8184 42 1 -4.6440 -9.4323 -3.0132 43 1 -5.2216 -7.7976 -3.4600 44 1 1.0040 -2.6223 -2.0271 45 1 -0.3914 -1.9289 -1.1614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595643573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:36 Heat of formation + Delta-G solvation = -140.683732 kcal Electronic energy + Delta-G solvation = -27974.196918 eV Core-core repulsion = 23854.665826 eV Total energy + Delta-G solvation = -4119.531092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.08636 -47.12560 -39.68805 -38.05219 -36.71967 -34.32130 -33.22211 -31.71738 -30.27728 -29.55347 -28.09340 -25.34248 -24.94895 -23.58594 -21.76145 -21.70202 -20.57218 -19.95785 -18.73307 -17.95070 -17.59024 -16.82623 -16.27750 -16.15754 -15.77351 -15.00102 -14.69362 -14.58675 -14.36848 -14.22256 -13.79795 -13.66672 -13.53772 -13.43275 -13.06670 -12.97721 -12.56976 -12.52704 -12.22971 -12.02565 -11.91263 -11.72934 -11.63591 -11.58974 -11.11835 -10.97940 -10.85795 -10.78517 -10.47759 -10.34205 -10.20619 -9.80983 -9.39082 -9.03094 -8.87753 -8.68235 -8.41265 -7.57035 -5.94968 -4.03033 3.21438 3.34673 3.41540 3.44383 3.46779 3.60765 3.87874 3.95220 4.03890 4.42924 4.50715 4.58480 4.69458 4.80240 4.92690 4.98962 5.08023 5.30406 5.34749 5.35549 5.46514 5.53230 5.54705 5.56974 5.68197 5.73329 5.77876 5.93677 6.04555 6.21405 6.36923 6.64126 6.70987 6.84073 6.85975 7.03487 7.11585 7.40088 7.56548 7.78356 7.97379 8.09760 8.45751 8.64863 9.01240 9.32345 9.62312 11.10786 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.025472 B = 0.003206 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.981715 B = 8730.769120 C = 9363.401792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.109 4.109 12 C -0.134 4.134 13 C 0.117 3.883 14 N -0.622 5.622 15 C 0.704 3.296 16 O -0.585 6.585 17 N -0.755 5.755 18 C 0.149 3.851 19 C -0.145 4.145 20 H 0.106 0.894 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.162 4.162 24 C 0.280 3.720 25 F -0.187 7.187 26 F -0.200 7.200 27 C 0.132 3.868 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.389 0.611 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.039 0.961 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 -20.184 -2.153 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.405 3.595 16 O -0.463 6.463 17 N -0.415 5.415 18 C 0.024 3.976 19 C -0.164 4.164 20 H 0.124 0.876 21 C -0.152 4.152 22 C -0.160 4.160 23 C -0.200 4.200 24 C 0.243 3.757 25 F -0.168 7.168 26 F -0.181 7.181 27 C 0.011 3.989 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.225 0.775 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.057 0.943 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.056 -19.301 -2.351 22.367 hybrid contribution 1.040 0.362 -0.002 1.102 sum -10.015 -18.939 -2.353 21.553 Atomic orbital electron populations 1.69933 1.05747 1.26745 1.49120 1.25060 0.94856 0.99231 0.94868 0.86594 0.79877 0.83649 0.77961 1.20744 1.21204 1.19920 1.21070 0.93136 0.90190 1.51589 0.92409 1.19004 0.92620 0.92052 0.94302 0.95166 1.21616 0.98561 0.94101 1.00435 1.21879 0.98649 0.99146 0.97520 1.21389 0.93326 0.87754 0.98304 1.47767 1.03625 1.09444 1.75035 1.15872 0.82511 0.82764 0.78310 1.90909 1.61586 1.38109 1.55661 1.45257 1.06509 1.08900 1.80845 1.21025 0.81046 0.92498 1.02996 1.23128 0.99172 0.96554 0.97558 0.87622 1.22353 0.92209 0.98375 1.02276 1.22482 0.99410 0.98074 0.95991 1.23366 0.93407 1.03207 1.00057 1.21846 0.85495 0.80612 0.87703 1.93072 1.85068 1.72433 1.66211 1.93015 1.72232 1.61405 1.91409 1.22180 0.98112 0.80191 0.98429 0.92738 0.93243 0.93040 0.92329 0.92244 0.92320 0.92172 0.77464 0.90888 0.90756 0.89732 0.89799 0.90448 0.89790 0.89024 0.88242 0.94288 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.11 11.61 55.43 0.64 -25.46 16 2 C 0.06 1.77 5.36 -17.82 -0.10 1.68 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.37 8.49 -34.44 -0.29 -14.66 16 8 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 9 C 0.04 1.00 2.20 -91.65 -0.20 0.80 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.11 -2.23 5.11 -26.69 -0.14 -2.37 16 12 C -0.13 -2.23 6.06 -26.83 -0.16 -2.39 16 13 C 0.12 1.94 6.40 -3.94 -0.03 1.91 16 14 N -0.62 -13.20 2.98 -178.76 -0.53 -13.74 16 15 C 0.70 15.14 8.30 -86.92 -0.72 14.42 16 16 O -0.59 -15.16 15.79 5.29 0.08 -15.08 16 17 N -0.76 -12.17 4.58 -65.22 -0.30 -12.47 16 18 C 0.15 1.98 4.40 -4.04 -0.02 1.96 16 19 C -0.14 -1.34 2.81 -89.50 -0.25 -1.59 16 20 H 0.11 0.92 8.02 -51.93 -0.42 0.51 16 21 C -0.11 -0.74 6.36 -25.07 -0.16 -0.90 16 22 C -0.12 -0.66 6.91 -24.74 -0.17 -0.83 16 23 C -0.16 -1.15 6.40 -25.08 -0.16 -1.31 16 24 C 0.28 2.83 2.33 -25.62 -0.06 2.77 16 25 F -0.19 -2.48 14.76 2.25 0.03 -2.45 16 26 F -0.20 -2.22 17.04 2.25 0.04 -2.18 16 27 C 0.13 3.31 5.46 -3.71 -0.02 3.29 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.81 5.57 -51.93 -0.29 0.52 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.39 5.49 5.81 -40.82 -0.24 5.26 16 36 H 0.07 1.05 7.63 -51.93 -0.40 0.66 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.54 7.85 -51.93 -0.41 0.14 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 43 H 0.10 0.67 8.12 -51.93 -0.42 0.24 16 44 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.12 3.46 5.38 -51.93 -0.28 3.18 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -33.33 356.33 -9.22 -42.55 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.06 Total: 4.15 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -2.47 Total: 2.78 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.19 Total: -51.67 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.08 Total: -15.08 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.07 Total: -4.64 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.33 -9.22 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595643573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.138 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds