Wall clock time and date at job start Tue Mar 31 2020 10:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99430 * 2 1 4 4 H 1.48500 * 109.47085 * 274.98655 * 3 2 1 5 5 H 1.48502 * 109.47338 * 34.99017 * 3 2 1 6 6 H 1.48500 * 109.46945 * 154.99146 * 3 2 1 7 7 C 1.37870 * 120.00453 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99893 * 189.51070 * 7 2 1 9 9 C 1.50699 * 119.99710 * 9.50315 * 7 2 1 10 10 H 1.08998 * 109.50096 * 305.45909 * 9 7 2 11 11 C 1.53051 * 109.49614 * 185.39710 * 9 7 2 12 12 C 1.53040 * 109.53646 * 178.65348 * 11 9 7 13 13 C 1.53191 * 109.31223 * 61.36466 * 12 11 9 14 14 N 1.46919 * 108.89676 * 305.29166 * 13 12 11 15 15 C 1.34771 * 120.63171 * 233.68364 * 14 13 12 16 16 O 1.21593 * 120.00066 * 174.90177 * 15 14 13 17 17 N 1.34779 * 120.00362 * 354.90167 * 15 14 13 18 18 C 1.46496 * 120.00177 * 184.96451 * 17 15 14 19 19 C 1.53003 * 109.46804 * 179.97438 * 18 17 15 20 20 H 1.09000 * 110.01796 * 53.60826 * 19 18 17 21 21 C 1.54267 * 110.03059 * 292.16196 * 19 18 17 22 22 C 1.54889 * 104.19303 * 217.10551 * 21 19 18 23 23 C 1.54883 * 102.75045 * 37.94718 * 22 21 19 24 24 C 1.53879 * 110.03066 * 174.99934 * 19 18 17 25 25 F 1.39906 * 110.03024 * 238.57011 * 24 19 18 26 26 F 1.39906 * 110.03176 * 359.94752 * 24 19 18 27 27 C 1.47211 * 118.55343 * 53.53788 * 14 13 12 28 28 H 0.96997 * 120.00546 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.45924 * 58.63107 * 11 9 7 30 30 H 1.09001 * 109.44709 * 298.66974 * 11 9 7 31 31 H 1.08997 * 109.49893 * 301.41329 * 12 11 9 32 32 H 1.08997 * 109.51917 * 181.33377 * 12 11 9 33 33 H 1.08998 * 109.58736 * 65.15545 * 13 12 11 34 34 H 1.09004 * 109.58615 * 185.42942 * 13 12 11 35 35 H 0.96997 * 119.99200 * 4.95869 * 17 15 14 36 36 H 1.08998 * 109.47301 * 299.99568 * 18 17 15 37 37 H 1.09000 * 109.47449 * 59.99980 * 18 17 15 38 38 H 1.08992 * 110.48775 * 335.78737 * 21 19 18 39 39 H 1.08997 * 110.48281 * 98.43183 * 21 19 18 40 40 H 1.09002 * 110.75929 * 279.62712 * 22 21 19 41 41 H 1.09006 * 110.75494 * 156.26082 * 22 21 19 42 42 H 1.09003 * 110.48696 * 203.37624 * 23 22 21 43 43 H 1.08998 * 110.49104 * 80.73357 * 23 22 21 44 44 H 1.09000 * 109.53250 * 186.67193 * 27 14 13 45 45 H 1.09004 * 109.67279 * 66.37289 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5031 2.6200 0.8028 6 1 3.5953 1.4123 0.5919 7 6 2.0046 -1.1939 -0.0005 8 1 3.0734 -1.2003 0.1540 9 6 1.2666 -2.4900 -0.2166 10 1 0.4561 -2.5723 0.5076 11 6 2.2325 -3.6637 -0.0378 12 6 1.4767 -4.9814 -0.2239 13 6 0.9022 -5.0398 -1.6428 14 7 0.0853 -3.8410 -1.8751 15 6 -1.1904 -3.9503 -2.2957 16 8 -1.8849 -2.9572 -2.3955 17 7 -1.6965 -5.1604 -2.6058 18 6 -3.0459 -5.2684 -3.1658 19 6 -3.3737 -6.7400 -3.4261 20 1 -3.2165 -7.3234 -2.5189 21 6 -2.4886 -7.2849 -4.5660 22 6 -3.4216 -8.2441 -5.3460 23 6 -4.7822 -7.5050 -5.3062 24 6 -4.8320 -6.8800 -3.8967 25 9 -5.5384 -7.7168 -3.0260 26 9 -5.4410 -5.6216 -3.9507 27 6 0.6898 -2.5203 -1.6354 28 1 -0.4851 0.8400 -0.0004 29 1 2.6632 -3.6303 0.9630 30 1 3.0292 -3.5942 -0.7784 31 1 0.6642 -5.0402 0.5003 32 1 2.1597 -5.8174 -0.0731 33 1 1.7171 -5.0725 -2.3659 34 1 0.2829 -5.9305 -1.7498 35 1 -1.1672 -5.9596 -2.4582 36 1 -3.7664 -4.8547 -2.4601 37 1 -3.0959 -4.7141 -4.1030 38 1 -2.1526 -6.4721 -5.2099 39 1 -1.6357 -7.8287 -4.1600 40 1 -3.4912 -9.2089 -4.8435 41 1 -3.0784 -8.3664 -6.3734 42 1 -5.6031 -8.2095 -5.4404 43 1 -4.8166 -6.7278 -6.0696 44 1 -0.0718 -1.7471 -1.7369 45 1 1.4870 -2.3450 -2.3579 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595643574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:40 Heat of formation + Delta-G solvation = -143.075845 kcal Electronic energy + Delta-G solvation = -27542.107179 eV Core-core repulsion = 23422.472357 eV Total energy + Delta-G solvation = -4119.634822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.14975 -47.19838 -39.81486 -38.11292 -36.75233 -34.35973 -33.25002 -31.76685 -30.29475 -29.58397 -28.21478 -25.39174 -24.99529 -23.65527 -21.84405 -21.67630 -20.62329 -20.12128 -18.88594 -17.95432 -17.57904 -16.82453 -16.34333 -16.17778 -15.54153 -15.26246 -14.80046 -14.63397 -14.42090 -14.32120 -13.88503 -13.74576 -13.61554 -13.38549 -13.33426 -13.03278 -12.64890 -12.58033 -12.25453 -12.14818 -11.94783 -11.75905 -11.70267 -11.29673 -11.13248 -10.97808 -10.95743 -10.90785 -10.52892 -10.40149 -10.23340 -9.86578 -9.49554 -9.04828 -8.98023 -8.80118 -8.35166 -7.67683 -5.97958 -4.03188 2.99247 3.33881 3.41598 3.43307 3.50664 3.62878 3.79928 3.86035 3.98857 4.38342 4.48072 4.57899 4.63606 4.75852 4.89935 4.96866 5.01878 5.24725 5.27740 5.33428 5.46179 5.48182 5.51026 5.54541 5.60852 5.73367 5.81262 5.88652 5.96277 6.15568 6.31277 6.56024 6.64621 6.73792 6.80423 6.98173 6.99735 7.28543 7.47447 7.76041 7.90548 8.02653 8.42547 8.54450 9.01035 9.22130 9.61097 11.09601 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.003002 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.986980 B = 9324.909135 C =10028.229023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.066 3.934 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.038 3.962 10 H 0.036 0.964 11 C -0.109 4.109 12 C -0.134 4.134 13 C 0.117 3.883 14 N -0.623 5.623 15 C 0.701 3.299 16 O -0.581 6.581 17 N -0.756 5.756 18 C 0.151 3.849 19 C -0.146 4.146 20 H 0.106 0.894 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.162 4.162 24 C 0.290 3.710 25 F -0.197 7.197 26 F -0.192 7.192 27 C 0.135 3.865 28 H 0.263 0.737 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.390 0.610 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 -20.164 -10.625 23.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.019 3.981 10 H 0.054 0.946 11 C -0.147 4.147 12 C -0.173 4.173 13 C -0.007 4.007 14 N -0.359 5.359 15 C 0.402 3.598 16 O -0.458 6.458 17 N -0.416 5.416 18 C 0.026 3.974 19 C -0.165 4.165 20 H 0.125 0.875 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.200 4.200 24 C 0.253 3.747 25 F -0.178 7.178 26 F -0.173 7.173 27 C 0.014 3.986 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.226 0.774 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.987 -19.242 -10.688 22.810 hybrid contribution 0.487 0.507 0.267 0.752 sum -5.500 -18.735 -10.420 22.132 Atomic orbital electron populations 1.69991 1.05815 1.26840 1.48490 1.25046 0.94760 0.99206 0.94804 0.86660 0.79954 0.83851 0.78037 1.20634 1.21297 1.19916 1.21030 0.94066 0.90565 1.50622 0.92398 1.18988 0.94334 0.92242 0.92577 0.94591 1.21610 0.98527 0.94074 1.00453 1.21955 1.00041 0.99206 0.96048 1.21476 0.94574 0.87169 0.97500 1.47801 1.10105 1.08856 1.69179 1.15910 0.82221 0.83099 0.78555 1.90944 1.58642 1.36031 1.60151 1.45227 1.17338 1.07865 1.71138 1.21009 0.84155 0.92549 0.99728 1.23031 0.92475 0.99346 1.01654 0.87546 1.22485 0.97696 0.99485 0.95973 1.22485 0.93263 0.98538 1.01706 1.23375 1.00618 1.01881 0.94079 1.21696 0.87677 0.75001 0.90353 1.93025 1.81048 1.71602 1.72164 1.93043 1.85219 1.42091 1.96927 1.22127 0.97322 0.80787 0.98351 0.92729 0.92963 0.93282 0.92143 0.92312 0.92124 0.92270 0.77380 0.90977 0.91049 0.89869 0.90025 0.90440 0.89814 0.88876 0.88144 0.87745 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 12.21 55.43 0.68 -25.39 16 2 C 0.07 1.84 5.24 -17.82 -0.09 1.74 16 3 Si 0.89 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.28 8.48 -34.44 -0.29 -14.57 16 8 H 0.06 1.54 7.77 -52.49 -0.41 1.13 16 9 C 0.04 0.94 2.11 -91.65 -0.19 0.75 16 10 H 0.04 1.02 8.09 -51.93 -0.42 0.60 16 11 C -0.11 -2.15 5.11 -26.68 -0.14 -2.28 16 12 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 13 C 0.12 1.74 6.38 -3.72 -0.02 1.71 16 14 N -0.62 -12.37 2.98 -178.27 -0.53 -12.90 16 15 C 0.70 14.28 8.30 -86.92 -0.72 13.56 16 16 O -0.58 -14.81 15.79 5.28 0.08 -14.72 16 17 N -0.76 -10.99 5.31 -65.23 -0.35 -11.33 16 18 C 0.15 1.99 4.09 -4.04 -0.02 1.98 16 19 C -0.15 -1.34 2.81 -89.50 -0.25 -1.59 16 20 H 0.11 0.91 8.02 -51.93 -0.42 0.50 16 21 C -0.12 -0.80 6.08 -25.07 -0.15 -0.95 16 22 C -0.12 -0.65 6.91 -24.74 -0.17 -0.83 16 23 C -0.16 -1.09 6.40 -25.08 -0.16 -1.25 16 24 C 0.29 2.86 2.53 -25.61 -0.06 2.79 16 25 F -0.20 -2.20 17.04 2.25 0.04 -2.16 16 26 F -0.19 -2.40 15.45 2.25 0.03 -2.37 16 27 C 0.13 3.25 5.50 -3.56 -0.02 3.23 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.68 5.64 -51.93 -0.29 0.38 16 35 H 0.39 4.42 5.84 -40.82 -0.24 4.18 16 36 H 0.07 1.13 7.75 -51.93 -0.40 0.73 16 37 H 0.07 1.00 7.97 -51.93 -0.41 0.58 16 38 H 0.08 0.62 7.76 -51.93 -0.40 0.21 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.54 8.11 -51.93 -0.42 0.12 16 43 H 0.10 0.63 8.12 -51.93 -0.42 0.21 16 44 H 0.10 2.98 5.94 -51.93 -0.31 2.68 16 45 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -33.37 358.28 -9.21 -42.58 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.09 Total: 2.47 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.46 Total: 2.02 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.20 Total: -49.62 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.08 Total: -14.72 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.07 Total: -4.53 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.37 -9.21 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595643574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.496 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds