Wall clock time and date at job start Tue Mar 31 2020 10:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00196 * 2 1 4 4 H 1.48504 * 109.47321 * 240.00276 * 3 2 1 5 5 H 1.48501 * 109.47316 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46989 * 120.00430 * 3 2 1 7 7 C 1.37878 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99846 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00016 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.52592 * 60.07854 * 9 7 2 11 11 C 1.53074 * 109.62357 * 180.10986 * 9 7 2 12 12 C 1.53041 * 109.65925 * 181.16630 * 11 9 7 13 13 C 1.53199 * 109.31313 * 298.70046 * 12 11 9 14 14 N 1.46925 * 108.77562 * 54.63407 * 13 12 11 15 15 C 1.34775 * 120.63097 * 126.37499 * 14 13 12 16 16 O 1.21585 * 119.99810 * 174.98610 * 15 14 13 17 17 N 1.34773 * 119.99548 * 354.97832 * 15 14 13 18 18 C 1.46509 * 119.99865 * 185.07796 * 17 15 14 19 19 C 1.52996 * 109.47132 * 180.02562 * 18 17 15 20 20 H 1.08992 * 110.01760 * 305.70050 * 19 18 17 21 21 C 1.54266 * 110.03102 * 67.09551 * 19 18 17 22 22 C 1.54968 * 104.16184 * 142.86009 * 21 19 18 23 23 C 1.54882 * 102.77520 * 322.11059 * 22 21 19 24 24 C 1.53876 * 110.03066 * 184.30645 * 19 18 17 25 25 F 1.39905 * 110.03223 * 359.97438 * 24 19 18 26 26 F 1.39900 * 110.03411 * 121.43177 * 24 19 18 27 27 C 1.46924 * 118.73744 * 306.39097 * 14 13 12 28 28 H 0.97000 * 119.99700 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.34585 * 61.13968 * 11 9 7 30 30 H 1.08998 * 109.43716 * 301.24986 * 11 9 7 31 31 H 1.08996 * 109.49614 * 178.74639 * 12 11 9 32 32 H 1.08998 * 109.52116 * 58.66541 * 12 11 9 33 33 H 1.08998 * 109.57853 * 294.84493 * 13 12 11 34 34 H 1.09002 * 109.70206 * 174.49464 * 13 12 11 35 35 H 0.97000 * 120.00552 * 5.07719 * 17 15 14 36 36 H 1.09005 * 109.46845 * 300.00179 * 18 17 15 37 37 H 1.09003 * 109.47202 * 59.99741 * 18 17 15 38 38 H 1.09000 * 110.48218 * 261.56927 * 21 19 18 39 39 H 1.08997 * 110.49088 * 24.20792 * 21 19 18 40 40 H 1.09000 * 110.76393 * 203.77405 * 22 21 19 41 41 H 1.09004 * 110.71926 * 80.42235 * 22 21 19 42 42 H 1.09005 * 110.48345 * 279.23270 * 23 22 21 43 43 H 1.09002 * 110.59909 * 156.64855 * 23 22 21 44 44 H 1.09003 * 109.58820 * 173.39970 * 27 14 13 45 45 H 1.09006 * 109.59033 * 293.68386 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5582 -0.8907 11 6 2.2426 -3.6653 0.0016 12 6 1.4784 -4.9910 -0.0277 13 6 0.6027 -5.0988 1.2246 14 7 -0.2557 -3.9091 1.3053 15 6 -1.5921 -4.0337 1.4270 16 8 -2.2829 -3.0455 1.5844 17 7 -2.1628 -5.2535 1.3741 18 6 -3.6222 -5.3810 1.3944 19 6 -4.0059 -6.8604 1.3251 20 1 -3.5363 -7.3275 0.4595 21 6 -3.5678 -7.5810 2.6169 22 6 -4.7062 -8.5966 2.8892 23 6 -5.9744 -7.8076 2.4791 24 6 -5.5353 -7.0047 1.2372 25 9 -6.1371 -5.7418 1.2463 26 9 -5.8854 -7.6951 0.0718 27 6 0.3705 -2.5812 1.2505 28 1 -0.4850 0.8401 0.0004 29 1 2.8535 -3.6181 0.9030 30 1 2.8849 -3.5969 -0.8764 31 1 2.1870 -5.8189 -0.0486 32 1 0.8485 -5.0287 -0.9165 33 1 1.2364 -5.1530 2.1098 34 1 -0.0172 -5.9933 1.1637 35 1 -1.6073 -6.0470 1.3225 36 1 -4.0119 -4.9476 2.3156 37 1 -4.0448 -4.8551 0.5383 38 1 -2.6217 -8.0997 2.4623 39 1 -3.4848 -6.8715 3.4402 40 1 -4.7418 -8.8631 3.9456 41 1 -4.5867 -9.4852 2.2693 42 1 -6.2806 -7.1346 3.2800 43 1 -6.7852 -8.4903 2.2248 44 1 -0.4026 -1.8142 1.2041 45 1 0.9832 -2.4290 2.1391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595643575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:43 Heat of formation + Delta-G solvation = -141.802323 kcal Electronic energy + Delta-G solvation = -27596.353052 eV Core-core repulsion = 23476.773454 eV Total energy + Delta-G solvation = -4119.579598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.13197 -47.18453 -39.78921 -38.09086 -36.73361 -34.33239 -33.26139 -31.76398 -30.25253 -29.53231 -28.19877 -25.38197 -24.99193 -23.62873 -21.81540 -21.66281 -20.59841 -20.10687 -18.84158 -17.93542 -17.57105 -16.80216 -16.32471 -16.15256 -15.50881 -15.26468 -14.74844 -14.64203 -14.42805 -14.27275 -13.84192 -13.73060 -13.60068 -13.42564 -13.35248 -12.99720 -12.60160 -12.54163 -12.23322 -12.15141 -11.92106 -11.72812 -11.69123 -11.27171 -11.11520 -10.96035 -10.95098 -10.87479 -10.50783 -10.39552 -10.20555 -9.86442 -9.44300 -9.08421 -8.94401 -8.75571 -8.39136 -7.62804 -5.95707 -4.04968 3.02538 3.34549 3.40481 3.41620 3.52492 3.64859 3.83386 3.89682 4.00878 4.40015 4.48392 4.59703 4.65369 4.77296 4.91629 4.98436 5.03810 5.26787 5.29340 5.34055 5.47458 5.49155 5.53484 5.55851 5.61570 5.75358 5.82374 5.91866 5.97919 6.16050 6.31914 6.59436 6.67068 6.76775 6.81457 7.00276 7.07661 7.36246 7.50867 7.76606 7.95356 8.08927 8.43467 8.59296 8.98373 9.26413 9.60501 11.09366 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022633 B = 0.003039 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.851384 B = 9210.256057 C = 9919.431762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.116 3.884 14 N -0.622 5.622 15 C 0.701 3.299 16 O -0.581 6.581 17 N -0.756 5.756 18 C 0.151 3.849 19 C -0.145 4.145 20 H 0.106 0.894 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.162 4.162 24 C 0.290 3.710 25 F -0.192 7.192 26 F -0.197 7.197 27 C 0.129 3.871 28 H 0.264 0.736 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.390 0.610 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.122 0.878 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.825 -20.639 5.728 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.403 3.597 16 O -0.458 6.458 17 N -0.416 5.416 18 C 0.026 3.974 19 C -0.165 4.165 20 H 0.124 0.876 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.200 4.200 24 C 0.253 3.747 25 F -0.173 7.173 26 F -0.178 7.178 27 C 0.009 3.991 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.226 0.774 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.140 0.860 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.530 -19.708 5.802 22.244 hybrid contribution 0.632 0.501 -0.305 0.863 sum -7.898 -19.206 5.496 21.482 Atomic orbital electron populations 1.69884 1.05710 1.26951 1.49054 1.25059 0.94878 0.99235 0.94854 0.86654 0.79556 0.83224 0.78522 1.20330 1.21261 1.20266 1.21025 0.92829 0.90139 1.52128 0.92445 1.18985 0.92613 0.92153 0.94168 0.95416 1.21614 0.98558 0.94071 1.00512 1.21946 0.98607 0.99140 0.97492 1.21487 0.93319 0.87469 0.98548 1.47782 1.03475 1.08877 1.75750 1.15906 0.82532 0.82987 0.78321 1.90933 1.61720 1.36561 1.56584 1.45229 1.06406 1.07575 1.82428 1.21004 0.80697 0.92376 1.03347 1.23026 0.92710 0.98752 1.02018 0.87566 1.22497 0.98962 0.98022 0.96160 1.22493 0.92948 0.97966 1.02565 1.23375 1.00227 1.00169 0.96186 1.21687 0.92051 0.77139 0.83844 1.93043 1.85361 1.42119 1.96749 1.93023 1.93442 1.79358 1.52010 1.22184 0.98350 0.80484 0.98125 0.92579 0.93203 0.93081 0.92360 0.92194 0.92143 0.92288 0.77407 0.90926 0.91125 0.90042 0.89861 0.89828 0.90453 0.88154 0.88888 0.85972 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.00 11.39 55.43 0.63 -25.37 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.25 8.57 -34.44 -0.30 -14.54 16 8 H 0.06 1.52 7.75 -52.49 -0.41 1.12 16 9 C 0.04 1.00 2.25 -91.63 -0.21 0.79 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.17 5.11 -26.67 -0.14 -2.31 16 12 C -0.13 -2.11 6.09 -26.61 -0.16 -2.27 16 13 C 0.12 1.75 6.43 -3.71 -0.02 1.73 16 14 N -0.62 -12.57 2.97 -178.49 -0.53 -13.11 16 15 C 0.70 14.47 8.30 -86.92 -0.72 13.75 16 16 O -0.58 -14.88 15.79 5.29 0.08 -14.80 16 17 N -0.76 -11.19 5.31 -65.22 -0.35 -11.54 16 18 C 0.15 2.04 4.08 -4.04 -0.02 2.02 16 19 C -0.15 -1.37 2.82 -89.50 -0.25 -1.62 16 20 H 0.11 0.94 8.02 -51.93 -0.42 0.52 16 21 C -0.12 -0.82 6.05 -25.03 -0.15 -0.97 16 22 C -0.12 -0.67 6.91 -24.70 -0.17 -0.84 16 23 C -0.16 -1.12 6.40 -25.08 -0.16 -1.28 16 24 C 0.29 2.91 2.53 -25.61 -0.06 2.85 16 25 F -0.19 -2.44 15.46 2.25 0.03 -2.40 16 26 F -0.20 -2.24 17.04 2.25 0.04 -2.20 16 27 C 0.13 3.17 5.38 -3.71 -0.02 3.15 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.68 5.56 -51.93 -0.29 0.40 16 35 H 0.39 4.51 5.79 -40.82 -0.24 4.28 16 36 H 0.07 1.04 7.97 -51.93 -0.41 0.63 16 37 H 0.07 1.12 7.79 -51.93 -0.40 0.71 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.64 7.77 -51.93 -0.40 0.23 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.65 8.12 -51.93 -0.42 0.23 16 43 H 0.09 0.56 8.11 -51.93 -0.42 0.13 16 44 H 0.12 3.55 5.15 -51.93 -0.27 3.28 16 45 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 356.78 15.07 5.38 5.38 Total: -1.00 -33.08 356.78 -9.25 -42.33 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -7.04 Total: 3.15 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.48 Total: 2.12 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.25 Total: -50.01 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.08 Total: -14.80 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.07 Total: -4.60 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.08 -9.25 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595643575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.470 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds