Wall clock time and date at job start Tue Mar 31 2020 11:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00354 * 2 1 4 4 H 1.48499 * 109.46629 * 270.00052 * 3 2 1 5 5 H 1.48503 * 109.46781 * 29.99839 * 3 2 1 6 6 H 1.48494 * 109.47177 * 149.99788 * 3 2 1 7 7 C 1.37879 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99920 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.50145 * 60.06661 * 9 7 2 11 11 C 1.53047 * 109.52208 * 180.14389 * 9 7 2 12 12 C 1.53048 * 109.53628 * 181.33338 * 11 9 7 13 13 C 1.53622 * 109.23865 * 298.51020 * 12 11 9 14 14 N 1.46924 * 108.54877 * 54.85895 * 13 12 11 15 15 C 1.34778 * 120.63555 * 126.36155 * 14 13 12 16 16 O 1.21576 * 120.00070 * 184.94484 * 15 14 13 17 17 N 1.34770 * 119.99547 * 4.94917 * 15 14 13 18 18 C 1.46501 * 119.99942 * 175.01437 * 17 15 14 19 19 C 1.53004 * 109.47227 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.46957 * 179.97438 * 19 18 17 21 21 C 1.53783 * 113.61443 * 185.00148 * 20 19 18 22 22 C 1.53781 * 87.08079 * 220.01934 * 21 20 19 23 23 F 1.39900 * 113.61788 * 139.97756 * 22 21 20 24 24 F 1.39902 * 113.61229 * 270.88293 * 22 21 20 25 25 C 1.53780 * 113.61536 * 87.50110 * 20 19 18 26 26 C 1.46934 * 118.73599 * 306.09414 * 14 13 12 27 27 H 0.96998 * 119.99963 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.46164 * 301.35031 * 11 9 7 29 29 H 1.08997 * 109.46286 * 61.31454 * 11 9 7 30 30 H 1.08994 * 109.49480 * 58.58241 * 12 11 9 31 31 H 1.08997 * 109.49666 * 178.65005 * 12 11 9 32 32 H 1.09002 * 109.74269 * 295.11604 * 13 12 11 33 33 H 1.09005 * 109.66459 * 174.55209 * 13 12 11 34 34 H 0.97004 * 120.00568 * 355.00547 * 17 15 14 35 35 H 1.08996 * 109.47219 * 59.99366 * 18 17 15 36 36 H 1.09004 * 109.47259 * 299.99569 * 18 17 15 37 37 H 1.08998 * 109.47396 * 60.00109 * 19 18 17 38 38 H 1.08996 * 109.46737 * 299.99303 * 19 18 17 39 39 H 1.09000 * 112.90715 * 316.24813 * 20 19 18 40 40 H 1.08996 * 113.61829 * 105.47147 * 21 20 19 41 41 H 1.09005 * 113.61319 * 334.56040 * 21 20 19 42 42 H 1.09000 * 113.61503 * 25.43102 * 25 20 19 43 43 H 1.09001 * 113.69096 * 254.53698 * 25 20 19 44 44 H 1.08996 * 109.58432 * 173.64337 * 26 14 13 45 45 H 1.08995 * 109.58202 * 293.92789 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6253 -2.5581 -0.8901 11 6 2.2444 -3.6633 0.0048 12 6 1.4798 -4.9887 -0.0288 13 6 0.6016 -5.0984 1.2269 14 7 -0.2572 -3.9086 1.3019 15 6 -1.5940 -4.0328 1.4208 16 8 -2.3013 -3.0445 1.3916 17 7 -2.1464 -5.2527 1.5723 18 6 -3.5862 -5.3803 1.8109 19 6 -3.9519 -6.8599 1.9449 20 6 -5.4555 -6.9930 2.1947 21 6 -5.9095 -8.4371 2.4657 22 6 -7.1448 -8.1271 1.6039 23 9 -7.5203 -9.1804 0.7632 24 9 -8.2181 -7.6017 2.3314 25 6 -6.2910 -7.0557 0.9052 26 6 0.3696 -2.5806 1.2509 27 1 -0.4850 0.8400 -0.0004 28 1 2.8891 -3.5938 -0.8713 29 1 2.8531 -3.6181 0.9079 30 1 0.8521 -5.0240 -0.9190 31 1 2.1882 -5.8169 -0.0499 32 1 1.2325 -5.1502 2.1142 33 1 -0.0182 -5.9929 1.1640 34 1 -1.5908 -6.0464 1.5232 35 1 -4.1331 -4.9455 0.9743 36 1 -3.8502 -4.8558 2.7293 37 1 -3.4051 -7.2950 2.7814 38 1 -3.6881 -7.3839 1.0263 39 1 -5.8299 -6.2737 2.9230 40 1 -6.1448 -8.6317 3.5120 41 1 -5.2520 -9.1903 2.0314 42 1 -5.7379 -7.4312 0.0443 43 1 -6.8348 -6.1358 0.6905 44 1 -0.4032 -1.8134 1.2038 45 1 0.9800 -2.4303 2.1413 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595649649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:18 Heat of formation + Delta-G solvation = -117.646281 kcal Electronic energy + Delta-G solvation = -26601.322064 eV Core-core repulsion = 22482.789951 eV Total energy + Delta-G solvation = -4118.532113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.11132 -47.45089 -39.76232 -38.77017 -36.86596 -34.71014 -33.32375 -31.80679 -30.51340 -29.56891 -26.68800 -25.41833 -25.00294 -23.74505 -22.09782 -21.75742 -20.49015 -19.93712 -18.80765 -17.71917 -17.45077 -16.90262 -16.62533 -16.20242 -15.77035 -15.58681 -15.00735 -14.55409 -14.32754 -14.05925 -13.99490 -13.73695 -13.69461 -13.66910 -13.33181 -12.99271 -12.81146 -12.57806 -12.44521 -12.22272 -11.96573 -11.80208 -11.49127 -11.22882 -11.03663 -10.97158 -10.89722 -10.75010 -10.48860 -10.40500 -10.21050 -9.86201 -9.43020 -9.08159 -8.93439 -8.74985 -8.39377 -7.62467 -5.95938 -4.05318 3.11639 3.20416 3.33125 3.39915 3.42015 3.43230 3.85877 3.90399 3.95190 3.98876 4.38981 4.47696 4.73610 4.95677 4.98517 5.01325 5.07726 5.17897 5.28592 5.32417 5.33694 5.38430 5.45306 5.48756 5.61194 5.78197 5.93934 5.95133 5.99938 6.16253 6.31647 6.59273 6.67605 6.81314 6.81904 7.00199 7.05904 7.36797 7.51919 7.76721 7.95224 8.08821 8.43280 8.60163 8.98373 9.27225 9.60136 11.08867 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.024500 B = 0.002379 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.605057 B =11767.643697 C =12510.500702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.699 3.301 16 O -0.582 6.582 17 N -0.759 5.759 18 C 0.140 3.860 19 C -0.118 4.118 20 C -0.100 4.100 21 C -0.160 4.160 22 C 0.250 3.750 23 F -0.193 7.193 24 F -0.181 7.181 25 C -0.163 4.163 26 C 0.128 3.872 27 H 0.263 0.737 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.390 0.610 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 -19.591 4.819 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.171 4.171 13 C -0.008 4.008 14 N -0.360 5.360 15 C 0.400 3.600 16 O -0.459 6.459 17 N -0.419 5.419 18 C 0.015 3.985 19 C -0.155 4.155 20 C -0.119 4.119 21 C -0.198 4.198 22 C 0.214 3.786 23 F -0.174 7.174 24 F -0.162 7.162 25 C -0.201 4.201 26 C 0.008 3.992 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.225 0.775 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.115 0.885 44 H 0.141 0.859 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.568 -18.701 4.820 21.552 hybrid contribution 0.506 0.350 -0.069 0.619 sum -9.061 -18.351 4.751 21.010 Atomic orbital electron populations 1.69903 1.05674 1.26773 1.49181 1.25064 0.94877 0.99218 0.94909 0.86608 0.79806 0.83607 0.78060 1.20724 1.21195 1.19944 1.21071 0.92859 0.90155 1.51953 0.92417 1.18979 0.92596 0.92155 0.94240 0.95355 1.21617 0.98544 0.94114 1.00499 1.22019 0.98576 0.99099 0.97446 1.21571 0.93318 0.87481 0.98466 1.47793 1.03493 1.08857 1.75848 1.15963 0.82621 0.83161 0.78250 1.90932 1.60469 1.36630 1.57829 1.45326 1.08826 1.07413 1.80364 1.21052 0.80871 0.94904 1.01686 1.21715 0.94118 0.96825 1.02875 1.22323 0.95610 0.96440 0.97487 1.24160 0.94614 0.99258 1.01772 1.22167 0.83067 0.85498 0.87884 1.93009 1.93249 1.59032 1.72131 1.93022 1.58849 1.86424 1.77861 1.24247 0.97317 0.99140 0.99370 1.22177 0.98348 0.80613 0.98088 0.92674 0.93092 0.93212 0.92197 0.92402 0.92179 0.92204 0.77453 0.91739 0.91921 0.90551 0.90751 0.87347 0.88796 0.86902 0.86789 0.88529 0.85907 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.81 11.39 55.43 0.63 -25.18 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.15 8.57 -34.44 -0.29 -14.44 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.17 5.11 -26.68 -0.14 -2.30 16 12 C -0.13 -2.09 6.10 -26.38 -0.16 -2.25 16 13 C 0.12 1.73 6.42 -3.49 -0.02 1.71 16 14 N -0.62 -12.43 2.97 -178.23 -0.53 -12.96 16 15 C 0.70 14.09 8.29 -86.92 -0.72 13.37 16 16 O -0.58 -14.62 15.77 5.30 0.08 -14.54 16 17 N -0.76 -10.66 5.46 -65.23 -0.36 -11.02 16 18 C 0.14 1.62 5.67 -4.04 -0.02 1.59 16 19 C -0.12 -0.82 5.16 -26.73 -0.14 -0.96 16 20 C -0.10 -0.65 3.63 -89.81 -0.33 -0.97 16 21 C -0.16 -0.93 7.43 -25.92 -0.19 -1.13 16 22 C 0.25 2.05 3.28 -25.92 -0.08 1.96 16 23 F -0.19 -1.90 17.41 2.25 0.04 -1.86 16 24 F -0.18 -1.81 17.38 2.25 0.04 -1.77 16 25 C -0.16 -1.15 7.42 -25.92 -0.19 -1.34 16 26 C 0.13 3.12 5.41 -3.71 -0.02 3.10 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.68 5.64 -51.93 -0.29 0.39 16 34 H 0.39 4.28 5.96 -40.82 -0.24 4.04 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.46 7.84 -51.93 -0.41 0.06 16 39 H 0.11 0.73 8.13 -51.93 -0.42 0.30 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.11 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.11 0.71 7.90 -51.93 -0.41 0.30 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.12 3.53 5.11 -51.93 -0.27 3.26 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -33.10 363.70 -9.32 -42.43 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.08 Total: 2.37 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.61 Total: 0.76 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.25 Total: -49.16 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.08 Total: -3.62 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.10 -9.32 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595649649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.220 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds