Wall clock time and date at job start Tue Mar 31 2020 10:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00097 * 2 1 4 4 H 1.48505 * 109.47442 * 270.00232 * 3 2 1 5 5 H 1.48506 * 109.47110 * 30.00006 * 3 2 1 6 6 H 1.48493 * 109.47492 * 150.00050 * 3 2 1 7 7 C 1.37880 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00272 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99791 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.49684 * 60.06814 * 9 7 2 11 11 C 1.53040 * 109.49676 * 180.15924 * 9 7 2 12 12 C 1.53041 * 109.53955 * 181.31640 * 11 9 7 13 13 C 1.53185 * 109.31503 * 298.63810 * 12 11 9 14 14 N 1.46932 * 108.77573 * 54.63101 * 13 12 11 15 15 C 1.34776 * 120.63007 * 126.41112 * 14 13 12 16 16 O 1.21581 * 120.00239 * 174.93999 * 15 14 13 17 17 N 1.34781 * 119.99855 * 354.94509 * 15 14 13 18 18 C 1.46504 * 120.00015 * 185.07584 * 17 15 14 19 19 H 1.08995 * 109.46860 * 324.99980 * 18 17 15 20 20 C 1.52997 * 109.47065 * 84.99983 * 18 17 15 21 21 C 1.52995 * 109.47142 * 180.02562 * 20 18 17 22 22 C 1.52998 * 109.47070 * 299.99739 * 21 20 18 23 23 C 1.53005 * 109.46975 * 59.99880 * 22 21 20 24 24 F 1.39896 * 109.47247 * 179.97438 * 23 22 21 25 25 F 1.39908 * 109.46717 * 60.00277 * 23 22 21 26 26 C 1.52995 * 109.47319 * 299.99968 * 23 22 21 27 27 C 1.46919 * 118.73898 * 306.39380 * 14 13 12 28 28 H 0.97000 * 119.99972 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46448 * 301.34433 * 11 9 7 30 30 H 1.09004 * 109.45726 * 61.29855 * 11 9 7 31 31 H 1.09002 * 109.49445 * 178.68128 * 12 11 9 32 32 H 1.09000 * 109.51815 * 58.61036 * 12 11 9 33 33 H 1.09003 * 109.58573 * 294.84610 * 13 12 11 34 34 H 1.08994 * 109.59005 * 174.42206 * 13 12 11 35 35 H 0.97000 * 119.99994 * 5.08051 * 17 15 14 36 36 H 1.09007 * 109.47128 * 300.00256 * 20 18 17 37 37 H 1.09007 * 109.46989 * 59.99945 * 20 18 17 38 38 H 1.09005 * 109.47239 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.47351 * 60.00248 * 21 20 18 40 40 H 1.08998 * 109.47448 * 300.00448 * 22 21 20 41 41 H 1.08997 * 109.47171 * 180.02562 * 22 21 20 42 42 H 1.08991 * 109.47418 * 300.00256 * 26 23 22 43 43 H 1.08997 * 109.46989 * 179.97438 * 26 23 22 44 44 H 1.08997 * 109.58834 * 293.81976 * 27 14 13 45 45 H 1.09003 * 109.70210 * 173.46427 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8757 -0.6814 0.8893 11 6 4.0225 -2.6366 -0.0056 12 6 5.5525 -2.6379 0.0269 13 6 6.0865 -1.9319 -1.2233 14 7 5.4857 -0.5935 -1.3036 15 6 6.2621 0.5017 -1.4230 16 8 5.7523 1.5941 -1.5810 17 7 7.6038 0.3859 -1.3674 18 6 8.4440 1.5859 -1.3853 19 1 7.9858 2.3407 -2.0243 20 6 8.5792 2.1350 0.0364 21 6 9.4562 3.3886 0.0176 22 6 10.8416 3.0337 -0.5259 23 6 10.7064 2.4845 -1.9476 24 9 11.9732 2.1606 -2.4449 25 9 10.1178 3.4533 -2.7676 26 6 9.8295 1.2310 -1.9289 27 6 4.0225 -0.4717 -1.2517 28 1 -0.4850 0.8401 0.0004 29 1 3.6401 -3.1601 0.8707 30 1 3.6781 -3.1409 -0.9085 31 1 5.9151 -3.6656 0.0473 32 1 5.8983 -2.1124 0.9171 33 1 5.8185 -2.5066 -2.1100 34 1 7.1708 -1.8424 -1.1575 35 1 8.0131 -0.4920 -1.3156 36 1 7.5922 2.3882 0.4235 37 1 9.0375 1.3800 0.6754 38 1 9.5529 3.7795 1.0305 39 1 8.9976 4.1433 -0.6212 40 1 11.3002 2.2789 0.1129 41 1 11.4665 3.9266 -0.5389 42 1 10.2880 0.4763 -1.2900 43 1 9.7328 0.8400 -2.9417 44 1 3.5861 -0.9272 -2.1406 45 1 3.7428 0.5808 -1.2057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596497073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:19 Heat of formation + Delta-G solvation = -138.529496 kcal Electronic energy + Delta-G solvation = -28096.157311 eV Core-core repulsion = 23976.719634 eV Total energy + Delta-G solvation = -4119.437678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.26001 -47.24145 -40.27616 -38.28109 -36.82481 -34.23966 -33.22866 -31.95678 -30.78508 -30.43494 -29.30894 -25.24415 -24.85132 -23.21050 -22.70638 -22.06744 -20.51560 -20.17658 -19.04778 -18.10346 -17.57233 -16.96866 -16.71470 -16.46470 -15.90162 -15.19514 -15.14809 -14.80092 -14.42290 -14.11290 -13.94502 -13.86172 -13.78913 -13.55396 -13.30401 -13.05802 -12.99786 -12.88919 -12.60450 -12.55230 -12.24290 -12.04331 -11.66906 -11.37206 -11.22457 -11.07396 -10.95508 -10.79423 -10.63390 -10.41622 -10.10977 -9.82916 -9.72252 -9.25272 -9.11909 -9.05963 -8.58827 -8.00699 -6.10213 -4.11933 2.74368 3.39606 3.42764 3.47757 3.50631 3.58715 3.75343 3.93957 3.98671 4.17671 4.43228 4.47710 4.69934 4.75041 4.91536 4.91898 5.04776 5.10003 5.22298 5.28754 5.32213 5.39706 5.43277 5.44417 5.64519 5.71162 5.75979 5.93157 5.97161 6.03865 6.08126 6.14807 6.37381 6.50449 6.55644 6.58387 6.71247 6.84649 7.09594 7.28193 7.44002 7.72903 8.21340 8.47935 8.88793 8.93008 9.51422 11.01737 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020472 B = 0.003713 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.392921 B = 7539.704488 C = 8334.148712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.272 1.272 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.077 0.923 9 C 0.004 3.996 10 H 0.030 0.970 11 C -0.100 4.100 12 C -0.136 4.136 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.703 3.297 16 O -0.589 6.589 17 N -0.749 5.749 18 C 0.166 3.834 19 H 0.099 0.901 20 C -0.137 4.137 21 C -0.117 4.117 22 C -0.158 4.158 23 C 0.295 3.705 24 F -0.202 7.202 25 F -0.196 7.196 26 C -0.167 4.167 27 C 0.119 3.881 28 H 0.265 0.735 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.393 0.607 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.285 0.264 -1.096 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.711 3.289 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.095 0.905 9 C -0.015 4.015 10 H 0.048 0.952 11 C -0.137 4.137 12 C -0.174 4.174 13 C -0.008 4.008 14 N -0.360 5.360 15 C 0.405 3.595 16 O -0.466 6.466 17 N -0.407 5.407 18 C 0.060 3.940 19 H 0.117 0.883 20 C -0.176 4.176 21 C -0.155 4.155 22 C -0.196 4.196 23 C 0.259 3.741 24 F -0.183 7.183 25 F -0.177 7.177 26 C -0.206 4.206 27 C -0.002 4.002 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.230 0.770 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 23.715 1.186 -1.251 23.778 hybrid contribution 0.722 0.485 -0.179 0.888 sum 24.438 1.671 -1.430 24.536 Atomic orbital electron populations 1.69891 1.06291 1.27165 1.50006 1.25045 0.94757 0.99125 0.94036 0.86963 0.79503 0.83361 0.79055 1.19822 1.22398 1.18965 1.20956 0.88205 0.94617 1.51721 0.90469 1.19504 0.96779 0.92173 0.93077 0.95226 1.21427 0.91874 0.98898 1.01540 1.21988 0.98775 0.99379 0.97301 1.21564 0.96104 0.84051 0.99075 1.47676 1.08005 1.04338 1.75963 1.15911 0.80921 0.84731 0.77957 1.90912 1.72947 1.25640 1.57135 1.45257 1.04956 1.08862 1.81603 1.20584 0.88070 0.88192 0.97122 0.88307 1.22076 1.01480 0.97215 0.96850 1.21477 0.93053 0.98511 1.02457 1.22569 1.00527 1.03538 0.92983 1.20929 0.77557 0.87152 0.88489 1.93013 1.42462 1.93253 1.89525 1.93030 1.84063 1.65374 1.75191 1.22770 0.96046 0.96733 1.05053 1.22505 0.74440 1.02452 1.00778 0.92504 0.92234 0.92485 0.91718 0.92050 0.91504 0.91767 0.77032 0.90081 0.91291 0.90034 0.90475 0.88668 0.89303 0.88291 0.88769 0.91777 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 2 C 0.07 2.12 5.45 -17.82 -0.10 2.03 16 3 Si 0.88 23.38 24.32 -169.99 -4.13 19.24 16 4 H -0.27 -7.35 6.92 56.52 0.39 -6.96 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.26 -7.00 6.53 56.52 0.37 -6.63 16 7 C -0.52 -14.26 9.15 -34.44 -0.31 -14.57 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.00 0.10 1.84 -91.65 -0.17 -0.07 16 10 H 0.03 0.73 7.21 -51.93 -0.37 0.35 16 11 C -0.10 -1.82 5.11 -26.69 -0.14 -1.96 16 12 C -0.14 -1.89 6.08 -26.61 -0.16 -2.05 16 13 C 0.12 1.53 6.43 -3.71 -0.02 1.51 16 14 N -0.62 -11.35 2.97 -178.51 -0.53 -11.88 16 15 C 0.70 12.96 8.26 -86.91 -0.72 12.24 16 16 O -0.59 -13.52 15.41 5.29 0.08 -13.44 16 17 N -0.75 -9.65 4.99 -58.68 -0.29 -9.95 16 18 C 0.17 1.91 2.37 -67.93 -0.16 1.75 16 19 H 0.10 1.42 7.17 -51.93 -0.37 1.05 16 20 C -0.14 -1.44 5.49 -26.73 -0.15 -1.59 16 21 C -0.12 -0.99 5.80 -26.73 -0.16 -1.14 16 22 C -0.16 -1.14 5.45 -26.73 -0.15 -1.29 16 23 C 0.30 2.73 2.10 -26.73 -0.06 2.67 16 24 F -0.20 -2.03 17.06 2.25 0.04 -1.99 16 25 F -0.20 -2.28 16.02 2.25 0.04 -2.25 16 26 C -0.17 -1.42 4.92 -26.73 -0.13 -1.55 16 27 C 0.12 2.67 5.09 -3.72 -0.02 2.65 16 28 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.62 5.57 -51.93 -0.29 0.34 16 35 H 0.39 3.83 6.06 -40.82 -0.25 3.59 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.74 7.80 -51.93 -0.41 0.34 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.08 2.01 2.35 -51.93 -0.12 1.89 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -33.95 347.14 -8.14 -42.09 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.90 Total: 0.99 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -2.44 Total: -1.36 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.05 Total: -48.52 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.07 Total: -4.24 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.13 Total: 19.24 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.95 -8.14 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596497073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.441 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds