Wall clock time and date at job start Tue Mar 31 2020 10:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00217 * 2 1 4 4 H 1.48500 * 109.47346 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47256 * 300.00251 * 3 2 1 6 6 H 1.48497 * 109.47074 * 60.00530 * 3 2 1 7 7 C 1.37880 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00003 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.49931 * 59.93790 * 9 7 2 11 11 C 1.53039 * 109.49707 * 180.02562 * 9 7 2 12 12 C 1.53042 * 109.54012 * 181.31500 * 11 9 7 13 13 C 1.53185 * 109.31236 * 298.63684 * 12 11 9 14 14 N 1.46928 * 108.77496 * 54.63660 * 13 12 11 15 15 C 1.34777 * 120.63079 * 126.37155 * 14 13 12 16 16 O 1.21588 * 119.99584 * 185.22703 * 15 14 13 17 17 N 1.34770 * 120.00185 * 5.21863 * 15 14 13 18 18 C 1.46498 * 119.99960 * 175.02634 * 17 15 14 19 19 H 1.08998 * 109.47556 * 325.00649 * 18 17 15 20 20 C 1.52999 * 109.47520 * 205.00061 * 18 17 15 21 21 C 1.52991 * 109.47639 * 179.97438 * 20 18 17 22 22 C 1.53009 * 109.47016 * 60.00235 * 21 20 18 23 23 C 1.52991 * 109.46832 * 300.00130 * 22 21 20 24 24 F 1.39908 * 109.47245 * 179.97438 * 23 22 21 25 25 F 1.39904 * 109.47377 * 299.99711 * 23 22 21 26 26 C 1.52999 * 109.47646 * 60.00120 * 23 22 21 27 27 C 1.46922 * 118.73599 * 306.63659 * 14 13 12 28 28 H 0.96997 * 120.00008 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46294 * 61.29886 * 11 9 7 30 30 H 1.09003 * 109.46372 * 301.33919 * 11 9 7 31 31 H 1.08996 * 109.49656 * 178.67918 * 12 11 9 32 32 H 1.09002 * 109.51720 * 58.60606 * 12 11 9 33 33 H 1.09000 * 109.58935 * 294.84281 * 13 12 11 34 34 H 1.09005 * 109.58673 * 174.41819 * 13 12 11 35 35 H 0.97001 * 120.00486 * 355.03005 * 17 15 14 36 36 H 1.09006 * 109.46784 * 59.99840 * 20 18 17 37 37 H 1.09001 * 109.46940 * 300.00360 * 20 18 17 38 38 H 1.09003 * 109.47581 * 179.97438 * 21 20 18 39 39 H 1.08998 * 109.47552 * 300.00658 * 21 20 18 40 40 H 1.09001 * 109.47108 * 59.99851 * 22 21 20 41 41 H 1.09000 * 109.46845 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.47441 * 59.99277 * 26 23 22 43 43 H 1.08994 * 109.47502 * 180.02562 * 26 23 22 44 44 H 1.09003 * 109.58606 * 173.14664 * 27 14 13 45 45 H 1.08998 * 109.59063 * 293.57264 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6229 -2.5567 -0.8896 11 6 2.2448 -3.6629 -0.0005 12 6 1.4808 -4.9886 -0.0336 13 6 0.6056 -5.1003 1.2186 14 7 -0.2530 -3.9109 1.3030 15 6 -1.5895 -4.0360 1.4247 16 8 -2.2974 -3.0479 1.3980 17 7 -2.1411 -5.2564 1.5757 18 6 -3.5804 -5.3848 1.8169 19 1 -3.9222 -4.5501 2.4288 20 6 -3.8598 -6.7002 2.5467 21 6 -5.3628 -6.8341 2.7992 22 6 -6.1074 -6.8244 1.4625 23 6 -5.8280 -5.5090 0.7328 24 9 -6.5083 -5.5003 -0.4897 25 9 -6.2662 -4.4376 1.5185 26 6 -4.3249 -5.3751 0.4802 27 6 0.3725 -2.5827 1.2464 28 1 -0.4850 0.8400 0.0004 29 1 2.8560 -3.6185 0.9009 30 1 2.8872 -3.5919 -0.8783 31 1 2.1895 -5.8163 -0.0573 32 1 0.8507 -5.0236 -0.9224 33 1 1.2393 -5.1571 2.1036 34 1 -0.0144 -5.9944 1.1525 35 1 -1.5852 -6.0497 1.5247 36 1 -3.3297 -6.7070 3.4991 37 1 -3.5180 -7.5349 1.9347 38 1 -5.5620 -7.7714 3.3187 39 1 -5.7043 -5.9993 3.4113 40 1 -5.7660 -7.6591 0.8504 41 1 -7.1782 -6.9193 1.6425 42 1 -3.9835 -6.2098 -0.1318 43 1 -4.1259 -4.4378 -0.0392 44 1 -0.4011 -1.8163 1.1987 45 1 0.9869 -2.4300 2.1337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596497076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:31 Heat of formation + Delta-G solvation = -145.878606 kcal Electronic energy + Delta-G solvation = -27978.111640 eV Core-core repulsion = 23858.355281 eV Total energy + Delta-G solvation = -4119.756359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.97174 -46.96195 -39.96022 -38.07440 -36.56245 -33.97472 -33.16435 -31.76561 -30.41034 -29.87677 -29.13264 -25.06871 -24.60556 -23.09347 -22.53648 -21.80653 -20.40317 -20.04221 -18.76386 -17.77761 -17.24563 -16.83942 -16.40139 -16.15998 -15.58340 -15.22148 -14.68570 -14.45874 -14.31024 -14.02276 -13.71796 -13.59980 -13.35921 -13.28206 -13.25307 -12.83172 -12.79242 -12.55788 -12.37510 -12.34539 -12.06695 -11.86818 -11.39786 -11.17582 -11.06569 -10.97364 -10.86680 -10.53453 -10.45751 -10.38450 -10.21954 -9.87175 -9.43427 -9.08532 -8.92452 -8.87084 -8.40165 -7.65439 -5.95912 -4.05403 3.06046 3.32637 3.40712 3.43464 3.65717 3.78563 4.03226 4.16854 4.24655 4.42687 4.49115 4.59221 4.72224 4.92130 4.99704 5.08703 5.22198 5.24916 5.33789 5.44460 5.48511 5.51311 5.59757 5.62123 5.73542 5.76481 5.94765 5.99942 6.06423 6.15560 6.30993 6.58832 6.66837 6.75571 6.80424 6.99531 7.04368 7.36071 7.50126 7.76221 7.94684 8.08660 8.43091 8.56931 8.98589 9.23880 9.60335 11.08969 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018379 B = 0.003476 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.095843 B = 8053.116714 C = 8952.834777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.109 4.109 12 C -0.134 4.134 13 C 0.116 3.884 14 N -0.622 5.622 15 C 0.698 3.302 16 O -0.577 6.577 17 N -0.752 5.752 18 C 0.170 3.830 19 H 0.096 0.904 20 C -0.131 4.131 21 C -0.114 4.114 22 C -0.158 4.158 23 C 0.293 3.707 24 F -0.203 7.203 25 F -0.196 7.196 26 C -0.174 4.174 27 C 0.128 3.872 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.391 0.609 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.124 0.876 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.082 -19.017 4.980 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.019 3.981 10 H 0.046 0.954 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.358 5.358 15 C 0.400 3.600 16 O -0.453 6.453 17 N -0.410 5.410 18 C 0.064 3.936 19 H 0.114 0.886 20 C -0.169 4.169 21 C -0.153 4.153 22 C -0.196 4.196 23 C 0.256 3.744 24 F -0.184 7.184 25 F -0.177 7.177 26 C -0.213 4.213 27 C 0.008 3.992 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.227 0.773 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.142 0.858 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.759 -18.078 4.976 20.695 hybrid contribution 0.647 0.573 -0.264 0.903 sum -8.112 -17.505 4.713 19.861 Atomic orbital electron populations 1.69905 1.05687 1.26714 1.49207 1.25062 0.94867 0.99239 0.94876 0.86553 0.80018 0.83901 0.77633 1.19820 1.21033 1.20974 1.21102 0.92891 0.90114 1.51921 0.92356 1.18912 0.92626 0.92226 0.94295 0.95384 1.21610 0.98536 0.94055 1.00513 1.21947 0.98612 0.99170 0.97471 1.21490 0.93354 0.87460 0.98542 1.47796 1.03482 1.08898 1.75647 1.15993 0.82658 0.83147 0.78218 1.90956 1.60320 1.36535 1.57522 1.45345 1.07956 1.07598 1.80130 1.20530 0.80313 0.98787 0.94012 0.88633 1.21906 0.96589 0.96947 1.01479 1.21443 0.94174 1.03684 0.95954 1.22555 1.03142 0.95645 0.98306 1.21034 0.91016 0.86030 0.76322 1.93006 1.82273 1.97022 1.46142 1.93021 1.91125 1.58931 1.74608 1.23009 0.91008 1.06235 1.01080 1.22107 0.98413 0.80550 0.98172 0.92695 0.93206 0.93085 0.92346 0.92226 0.92139 0.92214 0.77265 0.90254 0.90994 0.90017 0.90420 0.88759 0.89439 0.89026 0.88330 0.85837 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 11.39 55.43 0.63 -25.34 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.20 8.56 -34.44 -0.29 -14.49 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.96 2.24 -91.88 -0.21 0.75 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.15 5.11 -26.69 -0.14 -2.29 16 12 C -0.13 -2.10 6.08 -26.61 -0.16 -2.26 16 13 C 0.12 1.72 6.39 -3.71 -0.02 1.70 16 14 N -0.62 -12.34 2.98 -178.77 -0.53 -12.88 16 15 C 0.70 13.99 8.26 -86.92 -0.72 13.28 16 16 O -0.58 -14.44 15.43 5.29 0.08 -14.36 16 17 N -0.75 -10.60 4.99 -58.67 -0.29 -10.89 16 18 C 0.17 2.12 2.29 -67.93 -0.16 1.97 16 19 H 0.10 1.47 7.31 -51.93 -0.38 1.09 16 20 C -0.13 -1.04 5.39 -26.74 -0.14 -1.19 16 21 C -0.11 -0.81 5.80 -26.73 -0.16 -0.97 16 22 C -0.16 -1.26 5.45 -26.73 -0.15 -1.40 16 23 C 0.29 3.52 2.10 -26.74 -0.06 3.46 16 24 F -0.20 -2.75 17.06 2.25 0.04 -2.71 16 25 F -0.20 -2.84 16.02 2.25 0.04 -2.81 16 26 C -0.17 -2.22 5.03 -26.73 -0.13 -2.36 16 27 C 0.13 3.12 5.39 -3.94 -0.02 3.10 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.68 5.65 -51.93 -0.29 0.38 16 35 H 0.39 4.30 6.09 -40.82 -0.25 4.05 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.63 7.80 -51.93 -0.41 0.22 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.10 1.64 8.10 -51.93 -0.42 1.22 16 44 H 0.12 3.56 5.10 -51.93 -0.27 3.29 16 45 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -32.98 354.07 -9.22 -42.20 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.05 Total: 4.09 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.45 Total: 0.96 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.19 Total: -49.10 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.08 Total: -14.36 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.07 Total: -5.52 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.98 -9.22 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596497076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.675 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds