Wall clock time and date at job start Tue Mar 31 2020 11:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00270 * 2 1 4 4 H 1.48503 * 109.47540 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46948 * 299.99517 * 3 2 1 6 6 H 1.48496 * 109.47761 * 59.99443 * 3 2 1 7 7 C 1.37880 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99710 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00217 * 0.27681 * 7 2 1 10 10 H 1.09004 * 109.49018 * 59.72252 * 9 7 2 11 11 C 1.53035 * 109.49783 * 179.78700 * 9 7 2 12 12 C 1.53045 * 109.53776 * 181.32175 * 11 9 7 13 13 C 1.53199 * 109.30891 * 298.63697 * 12 11 9 14 14 N 1.46926 * 108.77947 * 54.63240 * 13 12 11 15 15 C 1.34770 * 120.62961 * 126.38626 * 14 13 12 16 16 O 1.21585 * 119.99876 * 174.96344 * 15 14 13 17 17 N 1.34780 * 120.00367 * 354.97336 * 15 14 13 18 18 C 1.46495 * 120.00170 * 185.06492 * 17 15 14 19 19 C 1.53007 * 109.47122 * 274.99779 * 18 17 15 20 20 C 1.53000 * 109.47045 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47161 * 59.99969 * 20 19 18 22 22 F 1.39900 * 109.47034 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47211 * 60.00007 * 21 20 19 24 24 C 1.53004 * 109.47310 * 299.99612 * 21 20 19 25 25 C 1.52999 * 109.46961 * 154.99823 * 18 17 15 26 26 C 1.46929 * 118.76453 * 306.41471 * 14 13 12 27 27 H 0.96996 * 119.99488 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46277 * 301.33728 * 11 9 7 29 29 H 1.08996 * 109.46155 * 61.31668 * 11 9 7 30 30 H 1.08999 * 109.50069 * 58.58143 * 12 11 9 31 31 H 1.08992 * 109.49770 * 178.68873 * 12 11 9 32 32 H 1.08995 * 109.58623 * 174.42532 * 13 12 11 33 33 H 1.09008 * 109.58426 * 294.70112 * 13 12 11 34 34 H 0.97003 * 119.99523 * 5.06337 * 17 15 14 35 35 H 1.09005 * 109.47339 * 34.99691 * 18 17 15 36 36 H 1.09000 * 109.46504 * 300.00013 * 19 18 17 37 37 H 1.08999 * 109.46626 * 59.99765 * 19 18 17 38 38 H 1.09001 * 109.46739 * 299.99809 * 20 19 18 39 39 H 1.09001 * 109.46652 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.46968 * 300.00801 * 24 21 20 41 41 H 1.08996 * 109.46993 * 179.97438 * 24 21 20 42 42 H 1.09001 * 109.47414 * 299.99598 * 25 18 17 43 43 H 1.09001 * 109.47424 * 60.00232 * 25 18 17 44 44 H 1.09000 * 109.56342 * 293.78490 * 26 14 13 45 45 H 1.09003 * 109.61949 * 173.35207 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0052 10 1 0.6242 -2.5534 -0.8953 11 6 2.2450 -3.6628 -0.0087 12 6 1.4810 -4.9884 -0.0478 13 6 0.6044 -5.1049 1.2032 14 7 -0.2542 -3.9159 1.2915 15 6 -1.5907 -4.0415 1.4116 16 8 -2.2817 -3.0546 1.5758 17 7 -2.1613 -5.2610 1.3500 18 6 -3.6206 -5.3887 1.3690 19 6 -4.1134 -5.3929 2.8175 20 6 -5.6374 -5.5269 2.8373 21 6 -6.0431 -6.8358 2.1568 22 9 -7.4366 -6.9586 2.1755 23 9 -5.4712 -7.9139 2.8408 24 6 -5.5504 -6.8316 0.7083 25 6 -4.0268 -6.6973 0.6883 26 6 0.3712 -2.5872 1.2458 27 1 -0.4849 0.8401 -0.0004 28 1 2.8881 -3.5885 -0.8855 29 1 2.8550 -3.6221 0.8936 30 1 0.8516 -5.0195 -0.9371 31 1 2.1897 -5.8161 -0.0737 32 1 -0.0153 -5.9988 1.1331 33 1 1.2374 -5.1677 2.0884 34 1 -1.6057 -6.0540 1.2930 35 1 -4.0659 -4.5484 0.8362 36 1 -3.6681 -6.2331 3.3502 37 1 -3.8238 -4.4606 3.3024 38 1 -6.0829 -4.6869 2.3044 39 1 -5.9884 -5.5294 3.8693 40 1 -5.9959 -5.9916 0.1754 41 1 -5.8391 -7.7642 0.2236 42 1 -3.6758 -6.6943 -0.3437 43 1 -3.5817 -7.5375 1.2211 44 1 0.9848 -2.4418 2.1349 45 1 -0.4020 -1.8200 1.2034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596521703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:11 Heat of formation + Delta-G solvation = -146.956788 kcal Electronic energy + Delta-G solvation = -27730.351854 eV Core-core repulsion = 23610.548741 eV Total energy + Delta-G solvation = -4119.803112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.15071 -47.13532 -39.96909 -38.06617 -36.51779 -33.83673 -33.02496 -31.71047 -31.40659 -29.80520 -28.51251 -25.07619 -24.46716 -23.43588 -22.44606 -21.81786 -20.40309 -20.05468 -18.77780 -17.67826 -17.55723 -16.82011 -16.44112 -16.29004 -16.01768 -14.92481 -14.66721 -14.37119 -14.23241 -14.05385 -13.73926 -13.69035 -13.55576 -13.41190 -13.14543 -12.81687 -12.65771 -12.57632 -12.47635 -12.24087 -12.00160 -11.93734 -11.74034 -11.48442 -11.00851 -10.93918 -10.83220 -10.49570 -10.40676 -10.38574 -10.23421 -9.88491 -9.46292 -9.11182 -8.94662 -8.79189 -8.42612 -7.65469 -5.99038 -4.07693 3.11769 3.30901 3.38982 3.41811 3.54077 3.78611 3.88280 4.12216 4.14920 4.40547 4.47299 4.60971 4.74121 4.90996 5.00778 5.16076 5.21569 5.31162 5.34192 5.38632 5.48489 5.50536 5.59072 5.62574 5.71213 5.78526 5.96022 6.03023 6.14126 6.16516 6.30535 6.58194 6.65409 6.79426 6.81084 6.98126 7.05881 7.33566 7.49295 7.74670 7.92484 8.06140 8.40878 8.57463 8.96131 9.23640 9.57985 11.06178 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023138 B = 0.003051 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.840201 B = 9174.959239 C = 9958.751412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.028 0.972 11 C -0.110 4.110 12 C -0.133 4.133 13 C 0.115 3.885 14 N -0.622 5.622 15 C 0.701 3.299 16 O -0.583 6.583 17 N -0.753 5.753 18 C 0.163 3.837 19 C -0.131 4.131 20 C -0.154 4.154 21 C 0.286 3.714 22 F -0.204 7.204 23 F -0.200 7.200 24 C -0.152 4.152 25 C -0.127 4.127 26 C 0.130 3.870 27 H 0.263 0.737 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.391 0.609 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.468 -16.580 2.914 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.046 0.954 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.358 5.358 15 C 0.403 3.597 16 O -0.460 6.460 17 N -0.411 5.411 18 C 0.057 3.943 19 C -0.170 4.170 20 C -0.193 4.193 21 C 0.250 3.750 22 F -0.185 7.185 23 F -0.181 7.181 24 C -0.191 4.191 25 C -0.165 4.165 26 C 0.009 3.991 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.227 0.773 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.057 0.943 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.129 -15.710 3.038 18.422 hybrid contribution 0.645 0.286 0.063 0.708 sum -8.484 -15.424 3.102 17.874 Atomic orbital electron populations 1.69903 1.05713 1.26687 1.49378 1.25056 0.94880 0.99250 0.94857 0.86546 0.80041 0.83849 0.77622 1.19818 1.21039 1.20971 1.21116 0.92920 0.90131 1.51763 0.92348 1.18991 0.92618 0.92199 0.94181 0.95391 1.21613 0.98549 0.94079 1.00524 1.21949 0.98605 0.99135 0.97475 1.21492 0.93361 0.87501 0.98538 1.47791 1.03537 1.08880 1.75632 1.15945 0.82527 0.83084 0.78142 1.90914 1.61667 1.36706 1.56722 1.45344 1.06304 1.07597 1.81844 1.20718 0.80535 0.97807 0.95250 1.21962 0.92661 1.04146 0.98210 1.22488 0.98717 0.95292 1.02798 1.21195 0.74123 0.85905 0.93745 1.93002 1.31422 1.96667 1.97434 1.92985 1.84536 1.58649 1.81972 1.22436 0.97542 1.05619 0.93490 1.21778 0.93964 0.98098 1.02662 1.22183 0.98322 0.80464 0.98131 0.92736 0.93083 0.93201 0.92201 0.92366 0.92169 0.92145 0.77318 0.89068 0.91061 0.89395 0.88393 0.89376 0.88291 0.89134 0.89650 0.90493 0.94322 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.50 11.40 55.43 0.63 -24.87 16 2 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -13.99 8.56 -34.44 -0.29 -14.28 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.96 2.25 -91.65 -0.21 0.75 16 10 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 11 C -0.11 -2.14 5.11 -26.69 -0.14 -2.28 16 12 C -0.13 -2.06 6.08 -26.61 -0.16 -2.22 16 13 C 0.12 1.72 6.43 -3.71 -0.02 1.69 16 14 N -0.62 -12.19 2.97 -178.49 -0.53 -12.72 16 15 C 0.70 13.72 8.26 -86.92 -0.72 13.00 16 16 O -0.58 -13.98 15.45 5.29 0.08 -13.90 16 17 N -0.75 -10.51 4.99 -58.68 -0.29 -10.80 16 18 C 0.16 1.95 2.42 -67.93 -0.16 1.78 16 19 C -0.13 -1.48 5.37 -26.73 -0.14 -1.63 16 20 C -0.15 -1.49 5.45 -26.73 -0.15 -1.64 16 21 C 0.29 2.80 2.10 -26.73 -0.06 2.75 16 22 F -0.20 -2.25 17.06 2.25 0.04 -2.21 16 23 F -0.20 -2.21 16.02 2.25 0.04 -2.18 16 24 C -0.15 -1.23 5.45 -26.75 -0.15 -1.38 16 25 C -0.13 -1.10 5.27 -26.75 -0.14 -1.24 16 26 C 0.13 3.11 5.39 -3.71 -0.02 3.09 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.69 5.57 -51.93 -0.29 0.40 16 33 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.39 4.42 6.06 -40.82 -0.25 4.17 16 35 H 0.09 1.28 7.66 -51.93 -0.40 0.88 16 36 H 0.07 0.77 7.80 -51.93 -0.41 0.37 16 37 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.62 7.80 -51.93 -0.41 0.22 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.12 3.46 5.17 -51.93 -0.27 3.19 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -31.61 354.10 -9.22 -40.83 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.05 Total: 4.37 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.45 Total: 0.02 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.19 Total: -48.39 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.08 Total: -13.90 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.07 Total: -4.39 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.61 -9.22 -40.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596521703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.131 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds