Wall clock time and date at job start Tue Mar 31 2020 11:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.31653 * 119.78239 * 2 1 4 4 C 1.33791 * 121.22363 * 179.97438 * 3 2 1 5 5 N 1.32857 * 132.41487 * 180.02562 * 4 3 2 6 6 C 1.32735 * 109.74031 * 180.02562 * 5 4 3 7 7 N 1.31062 * 109.62432 * 359.97438 * 6 5 4 8 8 N 1.36645 * 120.42651 * 359.97438 * 4 3 2 9 9 C 1.36512 * 120.18650 * 0.02562 * 8 4 3 10 10 N 1.37715 * 120.64268 * 179.97438 * 9 8 4 11 11 C 1.46959 * 110.99920 * 299.99727 * 10 9 8 12 12 C 1.53058 * 109.36419 * 183.19101 * 11 10 9 13 13 N 1.46955 * 109.36051 * 301.59955 * 12 11 10 14 14 C 1.46906 * 110.99744 * 183.18754 * 13 12 11 15 15 C 1.50703 * 109.47109 * 169.99905 * 14 13 12 16 16 H 1.08005 * 119.99876 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99989 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99944 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47418 * 89.99710 * 19 17 15 21 21 H 1.48498 * 109.47091 * 209.99770 * 19 17 15 22 22 H 1.48498 * 109.46997 * 329.99580 * 19 17 15 23 23 C 1.46959 * 110.88319 * 59.32174 * 13 12 11 24 24 C 1.46959 * 111.00199 * 63.79868 * 10 9 8 25 25 C 1.38152 * 118.71122 * 0.24894 * 9 8 4 26 26 C 1.50703 * 120.49016 * 179.72945 * 25 9 8 27 27 H 1.09000 * 109.46650 * 90.00362 * 1 2 3 28 28 H 1.08996 * 109.47245 * 209.99911 * 1 2 3 29 29 H 1.08992 * 109.47117 * 330.00769 * 1 2 3 30 30 H 1.08000 * 125.18200 * 179.97438 * 6 5 4 31 31 H 1.08995 * 109.48972 * 63.22276 * 11 10 9 32 32 H 1.08993 * 109.50763 * 303.16985 * 11 10 9 33 33 H 1.08994 * 109.48935 * 181.63483 * 12 11 10 34 34 H 1.09001 * 109.50540 * 61.57751 * 12 11 10 35 35 H 1.08992 * 109.47459 * 289.99824 * 14 13 12 36 36 H 1.09004 * 109.47040 * 49.99975 * 14 13 12 37 37 H 0.96997 * 119.99752 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.48972 * 60.64434 * 23 13 12 39 39 H 1.08998 * 109.48999 * 180.71033 * 23 13 12 40 40 H 1.08999 * 109.48803 * 296.77756 * 24 10 9 41 41 H 1.09000 * 109.48812 * 56.82393 * 24 10 9 42 42 H 1.09000 * 109.47395 * 89.99688 * 26 25 9 43 43 H 1.09004 * 109.47107 * 210.00274 * 26 25 9 44 44 H 1.09002 * 109.47064 * 329.99749 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1610 1.1426 0.0000 4 6 3.4985 1.1763 0.0005 5 7 4.3697 2.1794 0.0011 6 6 5.6069 1.6987 0.0009 7 7 5.5701 0.3885 0.0007 8 7 4.2199 0.0158 0.0016 9 6 3.5802 -1.1901 0.0016 10 7 4.2979 -2.3654 0.0021 11 6 5.1583 -2.4577 -1.1857 12 6 5.8769 -3.8091 -1.1882 13 7 6.6678 -3.9425 0.0431 14 6 7.4334 -5.1963 0.0437 15 6 8.4110 -5.1874 1.1906 16 1 8.4585 -4.3357 1.8531 17 6 9.2448 -6.2665 1.3941 18 7 9.1865 -7.3038 0.5877 19 14 10.4560 -6.2558 2.8161 20 1 9.8124 -6.8423 4.0191 21 1 11.6519 -7.0580 2.4537 22 1 10.8666 -4.8584 3.1061 23 6 5.8075 -3.8503 1.2310 24 6 5.0889 -2.4990 1.2335 25 6 2.1988 -1.2086 -0.0047 26 6 1.4516 -2.5173 -0.0111 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 6.5066 2.2961 0.0008 31 1 5.8946 -1.6543 -1.1647 32 1 4.5484 -2.3685 -2.0846 33 1 6.5376 -3.8680 -2.0530 34 1 5.1415 -4.6122 -1.2369 35 1 6.7509 -6.0388 0.1547 36 1 7.9771 -5.2905 -0.8964 37 1 9.7728 -8.0631 0.7311 38 1 5.0712 -4.6536 1.2099 39 1 6.4177 -3.9393 2.1298 40 1 5.8245 -1.6961 1.2820 41 1 4.4282 -2.4397 2.0983 42 1 1.2668 -2.8352 1.0150 43 1 0.5009 -2.3904 -0.5290 44 1 2.0467 -3.2730 -0.5240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601262579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:03 Heat of formation + Delta-G solvation = 158.896954 kcal Electronic energy + Delta-G solvation = -27018.130850 eV Core-core repulsion = 23394.572489 eV Total energy + Delta-G solvation = -3623.558361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.05491 -39.88965 -38.79069 -36.07001 -33.66410 -33.37435 -32.30475 -31.30291 -30.76603 -28.93157 -28.34139 -26.88664 -25.21270 -23.40427 -23.12794 -22.77826 -21.88077 -21.33054 -19.85773 -18.48786 -17.62796 -16.78762 -16.77240 -16.35015 -15.15391 -15.03152 -14.85911 -14.46676 -14.37589 -14.26124 -14.17783 -13.68641 -13.53346 -13.31754 -13.18612 -12.79088 -12.62259 -12.27880 -12.12941 -12.07311 -12.00184 -11.76167 -11.37840 -11.02717 -10.91771 -10.84416 -10.63237 -10.53045 -10.23670 -10.17460 -9.86633 -9.55005 -9.28689 -9.03665 -8.62292 -8.49499 -7.37152 -6.08768 -4.10554 0.15715 0.58227 1.77026 2.43023 3.07381 3.22092 3.23554 3.27795 3.34578 3.38970 3.91704 4.36305 4.36705 4.46538 4.57018 4.73541 4.85109 4.97454 5.12508 5.19996 5.23394 5.27417 5.33487 5.36938 5.43023 5.56394 5.59392 5.67162 5.69629 5.75418 5.84370 5.87129 6.03168 6.09517 6.16284 6.24468 6.41091 6.47578 6.60687 6.77350 7.18085 7.23948 7.34230 7.71440 7.84954 7.97456 8.08359 8.44220 8.96607 9.54154 11.02024 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.003398 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.214827 B = 8238.203961 C = 8945.302751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.234 3.766 3 N -0.469 5.469 4 C 0.446 3.554 5 N -0.536 5.536 6 C 0.248 3.752 7 N -0.330 5.330 8 N -0.345 5.345 9 C 0.374 3.626 10 N -0.482 5.482 11 C 0.054 3.946 12 C 0.061 3.939 13 N -0.536 5.536 14 C 0.195 3.805 15 C -0.509 4.509 16 H 0.063 0.937 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.897 3.103 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.072 3.928 24 C 0.055 3.945 25 C -0.167 4.167 26 C -0.089 4.089 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.229 0.771 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.035 0.965 35 H -0.007 1.007 36 H 0.031 0.969 37 H 0.262 0.738 38 H 0.033 0.967 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.927 11.496 -2.277 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.070 3.930 3 N -0.186 5.186 4 C 0.085 3.915 5 N -0.270 5.270 6 C -0.053 4.053 7 N -0.161 5.161 8 N -0.129 5.129 9 C 0.163 3.837 10 N -0.205 5.205 11 C -0.072 4.072 12 C -0.068 4.068 13 N -0.261 5.261 14 C 0.070 3.930 15 C -0.548 4.548 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.725 3.275 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.057 4.057 24 C -0.071 4.071 25 C -0.176 4.176 26 C -0.147 4.147 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.245 0.755 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.011 0.989 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.385 12.202 -2.311 21.365 hybrid contribution 1.164 -0.832 0.689 1.589 sum -16.221 11.370 -1.622 19.875 Atomic orbital electron populations 1.20905 0.86245 1.04911 1.04440 1.21795 0.97943 0.86107 0.87119 1.67769 1.02308 1.28630 1.19867 1.22749 0.89925 0.82222 0.96632 1.70884 0.98791 1.26957 1.30352 1.26324 0.96117 0.89698 0.93206 1.78629 0.90115 1.15012 1.32351 1.50336 1.07992 1.08777 1.45823 1.20106 0.91565 0.79722 0.92329 1.59880 1.29523 1.24772 1.06356 1.22472 0.94569 1.00637 0.89479 1.22035 0.95593 0.93736 0.95449 1.62295 1.23572 1.40729 0.99507 1.19712 0.91939 0.83103 0.98223 1.21129 1.18934 1.02463 1.12269 0.91909 1.24978 0.97416 0.95429 0.96672 1.69953 1.39282 1.06784 1.37688 0.86505 0.80629 0.78123 0.82231 1.20710 1.21210 1.19758 1.21971 0.94510 0.92719 0.96477 1.22532 0.95300 1.00975 0.88272 1.20450 0.89172 0.98742 1.09189 1.20566 0.99051 0.91764 1.03349 0.88763 0.88967 0.89260 0.75452 0.91091 0.90945 0.90195 0.94730 0.98892 0.95044 0.92861 0.94833 0.88728 0.91461 0.90819 0.90443 0.90643 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 9.39 36.01 0.34 -0.24 16 2 C 0.23 2.38 6.81 -82.29 -0.56 1.82 16 3 N -0.47 -6.45 10.38 -10.18 -0.11 -6.56 16 4 C 0.45 7.00 8.99 -323.16 -2.91 4.09 16 5 N -0.54 -8.50 11.26 -15.66 -0.18 -8.67 16 6 C 0.25 3.42 12.98 -91.96 -1.19 2.23 16 7 N -0.33 -5.22 10.08 29.26 0.29 -4.92 16 8 N -0.35 -5.28 3.65 -12.98 -0.05 -5.32 16 9 C 0.37 5.07 5.32 -152.98 -0.81 4.26 16 10 N -0.48 -6.86 3.68 -172.56 -0.64 -7.49 16 11 C 0.05 0.82 5.40 -3.76 -0.02 0.80 16 12 C 0.06 1.05 5.61 -3.76 -0.02 1.03 16 13 N -0.54 -11.13 4.70 -235.91 -1.11 -12.23 16 14 C 0.19 4.91 4.72 -4.97 -0.02 4.89 16 15 C -0.51 -13.94 8.47 -34.44 -0.29 -14.23 16 16 H 0.06 1.71 7.13 -52.48 -0.37 1.33 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.16 13.29 55.43 0.74 -25.43 16 19 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 24 C 0.05 0.86 5.44 -3.77 -0.02 0.84 16 25 C -0.17 -1.75 5.92 -104.27 -0.62 -2.37 16 26 C -0.09 -0.66 8.99 36.01 0.32 -0.33 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.30 6.76 -51.93 -0.35 -0.05 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.23 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.07 1.21 6.61 -51.93 -0.34 0.87 16 32 H 0.07 0.97 8.13 -51.93 -0.42 0.54 16 33 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 36 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.89 6.79 -51.93 -0.35 1.54 16 40 H 0.07 1.20 6.92 -51.93 -0.36 0.84 16 41 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.35 6.78 -51.93 -0.35 0.00 16 44 H 0.09 0.76 7.52 -51.93 -0.39 0.37 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -33.19 352.89 -12.97 -46.16 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -6.30 Total: -2.71 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -5.93 Total: 5.57 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -1.04 Total: -70.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.19 -12.97 -46.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601262579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.052 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds