Wall clock time and date at job start Tue Mar 31 2020 10:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99748 * 2 1 4 4 H 1.48500 * 109.47145 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46740 * 120.00432 * 3 2 1 6 6 H 1.48500 * 109.47071 * 240.00243 * 3 2 1 7 7 C 1.37875 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99981 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99797 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46979 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99978 * 294.30304 * 10 9 7 12 12 C 1.53237 * 109.33885 * 172.74705 * 11 10 9 13 13 N 1.47074 * 108.52431 * 53.83083 * 12 11 10 14 14 C 1.34774 * 120.88431 * 128.78997 * 13 12 11 15 15 O 1.21285 * 119.99734 * 175.23749 * 14 13 12 16 16 C 1.50697 * 119.99980 * 355.24527 * 14 13 12 17 17 H 1.08997 * 109.47290 * 35.19988 * 16 14 13 18 18 C 1.53001 * 109.46666 * 275.20169 * 16 14 13 19 19 C 1.53004 * 109.47022 * 179.97438 * 18 16 14 20 20 C 1.52998 * 109.47052 * 59.99854 * 19 18 16 21 21 C 1.53001 * 109.47326 * 299.99959 * 20 19 18 22 22 F 1.39898 * 109.47236 * 300.00162 * 21 20 19 23 23 F 1.39899 * 109.47384 * 179.97438 * 21 20 19 24 24 C 1.52998 * 109.47250 * 155.20121 * 16 14 13 25 25 C 1.47091 * 118.23479 * 308.81647 * 13 12 11 26 26 C 1.46896 * 110.99793 * 170.00338 * 10 9 7 27 27 H 0.96998 * 120.00289 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47490 * 299.99922 * 9 7 2 29 29 H 1.08998 * 109.47132 * 60.00608 * 9 7 2 30 30 H 1.08996 * 109.49301 * 292.70961 * 11 10 9 31 31 H 1.09000 * 109.49027 * 52.78440 * 11 10 9 32 32 H 1.08998 * 109.62814 * 294.11820 * 12 11 10 33 33 H 1.08999 * 109.78900 * 173.63589 * 12 11 10 34 34 H 1.08998 * 109.47529 * 299.99581 * 18 16 14 35 35 H 1.09000 * 109.47429 * 59.99785 * 18 16 14 36 36 H 1.08997 * 109.47131 * 299.99939 * 19 18 16 37 37 H 1.08993 * 109.47271 * 179.97438 * 19 18 16 38 38 H 1.08996 * 109.47247 * 180.02562 * 20 19 18 39 39 H 1.08997 * 109.47083 * 60.00055 * 20 19 18 40 40 H 1.09000 * 109.47170 * 299.99400 * 24 16 14 41 41 H 1.08997 * 109.47083 * 59.99740 * 24 16 14 42 42 H 1.08995 * 109.62494 * 291.47475 * 25 13 12 43 43 H 1.08997 * 109.78726 * 170.98717 * 25 13 12 44 44 H 1.08997 * 109.49046 * 307.20747 * 26 10 9 45 45 H 1.08996 * 109.49868 * 67.26662 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9768 -3.6491 -1.2505 12 6 4.0790 -4.7077 -1.1386 13 7 3.4617 -5.9862 -0.7545 14 6 3.7116 -7.1122 -1.4517 15 8 3.2639 -8.1731 -1.0709 16 6 4.5476 -7.0530 -2.7041 17 1 5.3271 -6.3005 -2.5855 18 6 3.6587 -6.6836 -3.8934 19 6 4.5075 -6.6229 -5.1650 20 6 5.1512 -7.9883 -5.4141 21 6 6.0401 -8.3577 -4.2249 22 9 7.0402 -7.3915 -4.0722 23 9 6.6283 -9.6065 -4.4524 24 6 5.1908 -8.4187 -2.9530 25 6 2.5638 -6.0032 0.4104 26 6 1.5212 -4.8935 0.2375 27 1 -0.4850 -0.8400 -0.0004 28 1 0.6247 -2.5571 0.8897 29 1 0.6241 -2.5567 -0.8903 30 1 2.3149 -3.8992 -2.0796 31 1 3.4272 -2.6721 -1.4261 32 1 4.8003 -4.4065 -0.3790 33 1 4.5831 -4.8184 -2.0987 34 1 2.8792 -7.4362 -4.0121 35 1 3.2004 -5.7107 -3.7161 36 1 5.2867 -5.8701 -5.0461 37 1 3.8742 -6.3602 -6.0123 38 1 5.7562 -7.9449 -6.3197 39 1 4.3720 -8.7411 -5.5330 40 1 5.8241 -8.6819 -2.1057 41 1 4.4113 -9.1713 -3.0716 42 1 3.1394 -5.8265 1.3189 43 1 2.0630 -6.9690 0.4762 44 1 0.9161 -4.8191 1.1411 45 1 0.8792 -5.1261 -0.6121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:31 Heat of formation + Delta-G solvation = -146.598427 kcal Electronic energy + Delta-G solvation = -27841.952357 eV Core-core repulsion = 23722.164785 eV Total energy + Delta-G solvation = -4119.787573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.23008 -47.21624 -40.52657 -38.12081 -37.09041 -34.66088 -32.71414 -31.88122 -30.88108 -30.18186 -28.13344 -25.50823 -24.18666 -23.36071 -23.12930 -22.14922 -20.99646 -20.30208 -18.80247 -17.82494 -17.34053 -16.87198 -16.77172 -16.24320 -15.76626 -15.34742 -15.26109 -14.70180 -14.50890 -14.28121 -14.00546 -13.93697 -13.71346 -13.69937 -13.54024 -13.31943 -13.04131 -12.82879 -12.54205 -12.52557 -12.09087 -11.86306 -11.55844 -11.44247 -11.39231 -11.22764 -11.17831 -11.03343 -10.80575 -10.74091 -10.65384 -10.45718 -10.12742 -9.67219 -8.88730 -8.53856 -8.46120 -7.50517 -6.45138 -4.15382 2.51375 2.88153 3.38949 3.41498 3.47379 3.59833 3.75036 3.94290 4.03546 4.41198 4.43030 4.49308 4.59215 4.64200 4.70047 4.81511 4.94940 5.04447 5.16412 5.24229 5.31711 5.32176 5.38765 5.41839 5.47675 5.51977 5.57840 5.62078 5.62815 5.68754 5.75145 5.88975 5.90965 6.11022 6.28626 6.31117 6.52561 6.86778 6.95257 7.39097 7.63610 7.81314 8.09751 8.18998 8.46601 8.77100 9.55790 10.93877 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.003112 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.073393 B = 8994.659655 C = 9743.140784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.072 2.928 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.591 4.591 8 H 0.058 0.942 9 C 0.184 3.816 10 N -0.529 5.529 11 C 0.052 3.948 12 C 0.105 3.895 13 N -0.604 5.604 14 C 0.522 3.478 15 O -0.548 6.548 16 C -0.107 4.107 17 H 0.104 0.896 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.159 4.159 21 C 0.290 3.710 22 F -0.199 7.199 23 F -0.201 7.201 24 C -0.139 4.139 25 C 0.118 3.882 26 C 0.040 3.960 27 H 0.267 0.733 28 H 0.022 0.978 29 H -0.019 1.019 30 H 0.024 0.976 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.169 -15.231 -9.790 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.189 4.189 3 Si 0.900 3.100 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.630 4.630 8 H 0.076 0.924 9 C 0.059 3.941 10 N -0.254 5.254 11 C -0.077 4.077 12 C -0.018 4.018 13 N -0.337 5.337 14 C 0.310 3.690 15 O -0.427 6.427 16 C -0.128 4.128 17 H 0.122 0.878 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.197 4.197 21 C 0.254 3.746 22 F -0.180 7.180 23 F -0.182 7.182 24 C -0.178 4.178 25 C -0.004 4.004 26 C -0.090 4.090 27 H 0.077 0.923 28 H 0.040 0.960 29 H -0.002 1.002 30 H 0.043 0.957 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 10.093 -14.064 -9.187 19.597 hybrid contribution -0.228 -1.768 -0.570 1.872 sum 9.864 -15.831 -9.757 21.051 Atomic orbital electron populations 1.70803 1.06936 1.30436 1.46652 1.25863 0.96453 1.02760 0.93792 0.83495 0.74828 0.75112 0.76588 1.20822 1.21313 1.21417 1.21938 0.94767 0.90855 1.55435 0.92383 1.19829 0.90612 0.88769 0.94938 1.61987 1.27617 1.02350 1.33429 1.22329 0.95051 0.99237 0.91119 1.22111 0.96315 0.82491 1.00861 1.48213 1.46737 1.08621 1.30127 1.20307 0.80845 0.83490 0.84394 1.90672 1.53106 1.28975 1.69906 1.21280 0.98897 0.98414 0.94242 0.87800 1.21592 0.97795 1.03417 0.92471 1.21511 0.99873 0.95813 0.98202 1.22553 0.99924 1.00375 0.96830 1.21089 0.83128 0.72468 0.97937 1.92999 1.64355 1.63785 1.96837 1.93010 1.86105 1.43274 1.95839 1.22338 1.00380 0.98890 0.96161 1.21744 0.91642 0.99361 0.87644 1.22436 0.95033 0.90614 1.00886 0.92307 0.96023 1.00170 0.95744 0.88242 0.90370 0.89800 0.90601 0.90065 0.90400 0.89781 0.89297 0.88601 0.89156 0.87587 0.90819 0.89348 0.90081 0.95579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.00 13.65 55.43 0.76 -26.25 16 2 C 0.02 0.42 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 24.30 29.90 -169.99 -5.08 19.21 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.59 -15.91 8.41 -34.44 -0.29 -16.20 16 8 H 0.06 1.54 7.12 -52.49 -0.37 1.17 16 9 C 0.18 4.52 4.04 -4.97 -0.02 4.50 16 10 N -0.53 -10.61 4.62 -235.76 -1.09 -11.70 16 11 C 0.05 0.89 5.46 -3.70 -0.02 0.87 16 12 C 0.10 1.41 6.42 -3.61 -0.02 1.38 16 13 N -0.60 -8.56 3.01 -172.46 -0.52 -9.07 16 14 C 0.52 7.16 6.81 -10.99 -0.07 7.09 16 15 O -0.55 -9.09 15.57 5.55 0.09 -9.00 16 16 C -0.11 -1.10 1.57 -91.77 -0.14 -1.25 16 17 H 0.10 1.00 6.00 -51.93 -0.31 0.69 16 18 C -0.11 -1.02 5.06 -26.73 -0.14 -1.16 16 19 C -0.12 -0.82 5.80 -26.73 -0.16 -0.98 16 20 C -0.16 -1.14 5.45 -26.73 -0.15 -1.29 16 21 C 0.29 2.75 2.10 -26.70 -0.06 2.69 16 22 F -0.20 -2.14 16.02 2.25 0.04 -2.10 16 23 F -0.20 -2.19 17.06 2.25 0.04 -2.15 16 24 C -0.14 -1.40 4.27 -26.70 -0.11 -1.51 16 25 C 0.12 1.77 6.58 -3.60 -0.02 1.75 16 26 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 27 H 0.27 7.87 7.22 -40.82 -0.29 7.58 16 28 H 0.02 0.57 7.84 -51.93 -0.41 0.16 16 29 H -0.02 -0.51 7.99 -51.93 -0.41 -0.92 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.10 1.86 6.67 -51.93 -0.35 1.51 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 0.88 5.24 -51.93 -0.27 0.61 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.77 7.88 -51.93 -0.41 0.36 16 36 H 0.08 0.56 7.80 -51.93 -0.41 0.16 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.11 1.08 7.87 -51.93 -0.41 0.67 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.31 7.11 -51.93 -0.37 0.94 16 44 H 0.08 1.36 7.99 -51.93 -0.41 0.94 16 45 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -31.36 354.21 -8.78 -40.15 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.03 Total: -1.32 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.32 Total: -3.11 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.85 Total: -47.02 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.25 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.21 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.36 -8.78 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.452 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds