Wall clock time and date at job start Tue Mar 31 2020 10:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86810 * 119.99827 * 2 1 4 4 H 1.48507 * 109.46815 * 240.00211 * 3 2 1 5 5 H 1.48496 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47221 * 120.00098 * 3 2 1 7 7 C 1.38810 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00237 * 163.07822 * 7 2 1 9 9 N 1.36936 * 119.99868 * 343.08515 * 7 2 1 10 10 C 1.46927 * 120.62719 * 331.81979 * 9 7 2 11 11 C 1.53195 * 108.77452 * 233.60913 * 10 9 7 12 12 C 1.53036 * 109.31461 * 305.37026 * 11 10 9 13 13 C 1.53037 * 109.54064 * 61.36418 * 12 11 10 14 14 H 1.08994 * 109.49966 * 58.61847 * 13 12 11 15 15 C 1.53001 * 109.49852 * 178.68510 * 13 12 11 16 16 N 1.46502 * 109.47107 * 184.93350 * 15 13 12 17 17 C 1.34776 * 119.99908 * 179.97438 * 16 15 13 18 18 O 1.21282 * 119.99893 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.99720 * 180.02562 * 17 16 15 20 20 C 1.52996 * 112.85478 * 309.66603 * 19 17 16 21 21 F 1.39897 * 109.47638 * 170.33139 * 20 19 17 22 22 F 1.39906 * 109.47055 * 290.33785 * 20 19 17 23 23 C 1.53779 * 113.61516 * 80.86787 * 19 17 16 24 24 C 1.53949 * 87.02526 * 89.22500 * 23 19 17 25 25 C 1.53777 * 87.11053 * 25.36330 * 24 23 19 26 26 C 1.46931 * 120.60901 * 151.84633 * 9 7 2 27 27 H 0.96997 * 120.00791 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.58515 * 113.82637 * 10 9 7 29 29 H 1.08996 * 109.58815 * 353.39634 * 10 9 7 30 30 H 1.08994 * 109.49707 * 185.41305 * 11 10 9 31 31 H 1.09003 * 109.49783 * 65.31959 * 11 10 9 32 32 H 1.09000 * 109.46094 * 301.34095 * 12 11 10 33 33 H 1.09004 * 109.45103 * 181.38016 * 12 11 10 34 34 H 1.09003 * 109.47032 * 64.93373 * 15 13 12 35 35 H 1.08999 * 109.47200 * 304.93570 * 15 13 12 36 36 H 0.96996 * 119.99885 * 359.97438 * 16 15 13 37 37 H 1.09001 * 109.46870 * 50.33038 * 20 19 17 38 38 H 1.09008 * 113.61426 * 203.74732 * 23 19 17 39 39 H 1.08998 * 113.61480 * 334.64398 * 23 19 17 40 40 H 1.09001 * 113.53942 * 270.81641 * 24 23 19 41 41 H 1.09004 * 113.74538 * 139.94105 * 24 23 19 42 42 H 1.08997 * 113.62109 * 220.08908 * 25 24 23 43 43 H 1.09006 * 113.61638 * 89.18596 * 25 24 23 44 44 H 1.09003 * 109.61258 * 6.62069 * 26 9 7 45 45 H 1.08995 * 109.56179 * 246.19557 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3461 10 6 0.2263 -2.3399 1.2680 11 6 0.4981 -3.3189 2.4146 12 6 0.8128 -4.7005 1.8367 13 6 2.0680 -4.6170 0.9651 14 1 2.9031 -4.2536 1.5639 15 6 2.4005 -6.0052 0.4143 16 7 3.6657 -5.9481 -0.3222 17 6 4.1606 -7.0612 -0.8987 18 8 3.5588 -8.1102 -0.8075 19 6 5.4623 -7.0026 -1.6558 20 6 5.5019 -5.8691 -2.6826 21 9 6.8018 -5.7384 -3.1831 22 9 4.6248 -6.1605 -3.7329 23 6 6.7043 -7.0575 -0.7507 24 6 6.6358 -8.5896 -0.8855 25 6 5.9080 -8.3616 -2.2208 26 6 1.8147 -3.6527 -0.1979 27 1 -0.4851 0.8400 0.0004 28 1 -0.6769 -2.6408 0.7371 29 1 0.0993 -1.3342 1.6686 30 1 -0.3823 -3.3839 3.0539 31 1 1.3479 -2.9671 2.9996 32 1 -0.0275 -5.0411 1.2315 33 1 0.9825 -5.4047 2.6512 34 1 1.6045 -6.3305 -0.2555 35 1 2.4921 -6.7112 1.2397 36 1 4.1471 -5.1092 -0.3948 37 1 5.2006 -4.9363 -2.2059 38 1 7.5939 -6.6187 -1.2029 39 1 6.5225 -6.6989 0.2624 40 1 6.0158 -9.0661 -0.1262 41 1 7.6108 -9.0646 -0.9952 42 1 5.0842 -9.0543 -2.3930 43 1 6.5793 -8.2801 -3.0757 44 1 2.7357 -3.5133 -0.7640 45 1 1.0413 -4.0603 -0.8488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602899280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:35 Heat of formation + Delta-G solvation = -110.104903 kcal Electronic energy + Delta-G solvation = -27814.568320 eV Core-core repulsion = 23696.363225 eV Total energy + Delta-G solvation = -4118.205095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.19807 -47.16727 -40.74927 -38.31034 -37.29780 -34.97024 -33.11190 -30.76220 -30.49096 -29.08062 -26.13137 -25.65224 -25.30779 -23.81834 -22.25638 -21.73479 -20.95556 -19.61056 -18.88969 -18.02566 -17.50082 -17.35019 -16.76747 -16.13163 -15.93921 -15.30187 -15.02706 -14.83740 -14.22586 -14.01007 -13.98667 -13.68852 -13.57613 -13.49551 -13.18848 -12.86456 -12.67456 -12.62200 -12.36032 -12.31337 -12.22059 -12.09947 -11.36538 -11.26985 -11.05902 -10.78916 -10.75619 -10.59205 -10.51443 -10.31161 -10.24062 -10.06594 -9.94375 -9.62809 -9.49247 -9.10400 -8.51564 -6.73128 -5.84262 -3.27943 2.32243 2.93595 3.33830 3.39603 3.40445 3.40615 3.82918 3.97227 4.03581 4.39963 4.43040 4.49048 4.66477 4.84698 4.97281 5.09444 5.22496 5.34291 5.35943 5.37174 5.39077 5.55278 5.57295 5.68881 5.75549 5.76694 5.85503 5.91772 6.03249 6.15539 6.23310 6.30212 6.35312 6.51643 6.63694 6.69641 6.79426 6.88927 7.34221 7.35945 7.61900 7.72492 8.03295 8.38874 9.15071 9.78366 10.35198 11.23967 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.003741 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.483359 B = 7483.051644 C = 8710.578779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.258 4.258 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.074 0.926 15 C 0.127 3.873 16 N -0.719 5.719 17 C 0.543 3.457 18 O -0.526 6.526 19 C -0.170 4.170 20 C 0.281 3.719 21 F -0.196 7.196 22 F -0.195 7.195 23 C -0.116 4.116 24 C -0.135 4.135 25 C -0.110 4.110 26 C 0.154 3.846 27 H 0.255 0.745 28 H 0.018 0.982 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.401 0.599 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.093 0.907 44 H 0.048 0.952 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.521 -13.910 0.141 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.139 4.139 14 H 0.092 0.908 15 C 0.003 3.997 16 N -0.370 5.370 17 C 0.327 3.673 18 O -0.402 6.402 19 C -0.175 4.175 20 C 0.227 3.773 21 F -0.178 7.178 22 F -0.176 7.176 23 C -0.154 4.154 24 C -0.173 4.173 25 C -0.148 4.148 26 C 0.027 3.973 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.237 0.763 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.066 0.934 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 10.940 -14.493 0.160 18.159 hybrid contribution 0.581 1.427 -0.214 1.556 sum 11.522 -13.066 -0.054 17.420 Atomic orbital electron populations 1.70017 1.05301 1.25719 1.53400 1.25040 0.95254 0.98420 1.00659 0.86388 0.78962 0.83392 0.78123 1.20855 1.21582 1.20999 1.19096 0.92439 0.84837 1.42355 0.91835 1.44019 1.35937 1.01255 1.50109 1.20799 0.88534 0.98303 0.87998 1.22172 1.00142 0.95923 0.99858 1.21336 0.96662 0.97816 0.97937 1.21972 0.98998 0.93442 0.99488 0.90797 1.21538 0.84369 0.98291 0.95460 1.46073 1.25085 1.11308 1.54577 1.19299 0.84744 0.84179 0.79121 1.90701 1.59581 1.29771 1.60124 1.23304 0.96877 0.98975 0.98311 1.21513 0.73174 0.99223 0.83438 1.92970 1.38881 1.96904 1.89011 1.93029 1.68960 1.95048 1.60541 1.22990 0.94920 0.98192 0.99255 1.22832 1.01224 0.95377 0.97830 1.22789 1.00847 0.93273 0.97878 1.20897 0.97424 0.86963 0.92048 0.93499 0.96417 0.89557 0.93131 0.92744 0.92411 0.93403 0.91259 0.91689 0.76350 0.86932 0.87804 0.90047 0.89392 0.90488 0.89155 0.88813 0.93385 0.96236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 11.20 55.49 0.62 -24.93 16 2 C 0.01 0.14 4.92 -17.43 -0.09 0.06 16 3 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.26 -6.76 9.58 -15.06 -0.14 -6.91 16 8 H 0.06 1.61 7.89 -52.48 -0.41 1.20 16 9 N -0.59 -14.06 2.99 -172.31 -0.52 -14.57 16 10 C 0.17 3.89 5.30 -3.71 -0.02 3.87 16 11 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 12 C -0.10 -1.55 5.17 -26.69 -0.14 -1.69 16 13 C -0.12 -1.82 2.37 -90.50 -0.21 -2.04 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.13 1.72 5.07 -4.04 -0.02 1.70 16 16 N -0.72 -8.80 5.22 -60.29 -0.31 -9.11 16 17 C 0.54 7.03 6.62 -10.99 -0.07 6.96 16 18 O -0.53 -8.50 15.83 5.56 0.09 -8.42 16 19 C -0.17 -1.77 0.96 -154.85 -0.15 -1.92 16 20 C 0.28 2.98 4.72 37.16 0.18 3.16 16 21 F -0.20 -2.10 15.76 2.25 0.04 -2.07 16 22 F -0.19 -2.58 17.20 2.25 0.04 -2.55 16 23 C -0.12 -0.95 7.11 -25.83 -0.18 -1.13 16 24 C -0.14 -1.15 7.76 -25.83 -0.20 -1.35 16 25 C -0.11 -1.10 6.83 -25.92 -0.18 -1.27 16 26 C 0.15 2.96 5.60 -3.71 -0.02 2.93 16 27 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 2.24 6.06 -51.93 -0.31 1.92 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.40 4.30 6.68 -40.82 -0.27 4.03 16 37 H 0.11 1.00 7.11 -51.93 -0.37 0.63 16 38 H 0.10 0.75 7.18 -51.92 -0.37 0.37 16 39 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 1.04 7.41 -51.93 -0.38 0.65 16 43 H 0.09 0.84 7.83 -51.93 -0.41 0.43 16 44 H 0.05 0.87 7.14 -51.93 -0.37 0.50 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -30.48 360.47 -8.17 -38.65 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.11 Total: 1.93 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.41 Total: -0.37 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.21 Total: -48.62 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.07 Total: -4.61 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.48 -8.17 -38.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602899280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.455 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds