Wall clock time and date at job start Tue Mar 31 2020 11:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47041 * 2 1 4 4 C 1.39249 * 119.78161 * 124.72991 * 3 2 1 5 5 C 1.38159 * 119.01480 * 179.70293 * 4 3 2 6 6 N 1.37722 * 120.64525 * 180.26183 * 5 4 3 7 7 C 1.46501 * 119.99713 * 0.33820 * 6 5 4 8 8 C 1.53040 * 109.45910 * 275.02492 * 7 6 5 9 9 C 1.53191 * 109.31201 * 178.60634 * 8 7 6 10 10 N 1.46921 * 108.76795 * 54.65383 * 9 8 7 11 11 C 1.36934 * 120.63376 * 126.36011 * 10 9 8 12 12 H 1.07993 * 120.00337 * 208.02356 * 11 10 9 13 13 C 1.38814 * 119.99347 * 28.02349 * 11 10 9 14 14 N 1.31619 * 120.00564 * 17.53032 * 13 11 10 15 15 Si 1.86803 * 119.99777 * 197.52097 * 13 11 10 16 16 H 1.48500 * 109.46838 * 94.07066 * 15 13 11 17 17 H 1.48503 * 109.47369 * 214.06713 * 15 13 11 18 18 H 1.48502 * 109.47158 * 334.07073 * 15 13 11 19 19 C 1.46932 * 118.73888 * 306.38649 * 10 9 8 20 20 C 1.53037 * 109.45750 * 154.97222 * 7 6 5 21 21 N 1.36512 * 118.70915 * 0.59367 * 5 4 3 22 22 N 1.40067 * 133.37296 * 179.71626 * 21 5 4 23 23 C 1.31063 * 107.03810 * 179.97438 * 22 21 5 24 24 N 1.32728 * 109.62454 * 359.97438 * 23 22 21 25 25 C 1.32852 * 109.74393 * 359.97438 * 24 23 22 26 26 N 1.31650 * 119.78309 * 305.00450 * 3 2 1 27 27 H 1.08999 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47354 * 299.99422 * 1 2 3 29 29 H 1.08994 * 109.47380 * 59.99488 * 1 2 3 30 30 H 1.09000 * 109.46851 * 240.00714 * 2 1 3 31 31 H 1.08992 * 109.47437 * 119.99969 * 2 1 3 32 32 H 1.07998 * 120.49282 * 0.02562 * 4 3 2 33 33 H 0.96995 * 119.99810 * 180.33377 * 6 5 4 34 34 H 1.08994 * 109.45798 * 35.00047 * 7 6 5 35 35 H 1.09002 * 109.49596 * 298.57286 * 8 7 6 36 36 H 1.09005 * 109.49440 * 58.66348 * 8 7 6 37 37 H 1.09005 * 109.59547 * 294.86492 * 9 8 7 38 38 H 1.08997 * 109.70339 * 174.50619 * 9 8 7 39 39 H 0.96998 * 120.00284 * 180.02562 * 14 13 11 40 40 H 1.08998 * 109.58801 * 293.82055 * 19 10 9 41 41 H 1.08998 * 109.70102 * 173.46282 * 19 10 9 42 42 H 1.08999 * 109.50228 * 301.33759 * 20 7 6 43 43 H 1.09003 * 109.50156 * 61.42797 * 20 7 6 44 44 H 1.08004 * 125.18956 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9120 1.8435 0.9933 5 6 3.3674 3.1477 0.9745 6 7 4.2424 3.5997 1.9373 7 6 4.7049 2.6925 2.9906 8 6 3.6861 2.6755 4.1324 9 6 4.1558 1.6997 5.2160 10 7 5.5168 2.0697 5.6274 11 6 5.8123 2.2863 6.9469 12 1 6.6108 2.9609 7.2178 13 6 5.0852 1.6385 7.9362 14 7 4.3640 0.5792 7.6361 15 14 5.1305 2.2703 9.6936 16 1 3.9845 3.1872 9.9196 17 1 5.0406 1.1245 10.6340 18 1 6.4024 3.0014 9.9241 19 6 6.5549 2.2035 4.5962 20 6 6.0581 3.1733 3.5195 21 7 2.9279 3.9816 -0.0129 22 7 3.1765 5.3258 -0.3182 23 6 2.4800 5.6111 -1.3912 24 7 1.8079 4.5365 -1.7851 25 6 2.0607 3.5231 -0.9641 26 7 1.6323 2.2559 -0.9359 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.2376 1.1604 1.7638 33 1 4.5523 4.5186 1.9179 34 1 4.8107 1.6871 2.5832 35 1 3.5983 3.6758 4.5566 36 1 2.7167 2.3555 3.7503 37 1 4.1575 0.6849 4.8182 38 1 3.4869 1.7544 6.0748 39 1 3.8557 0.1268 8.3274 40 1 6.7522 1.2298 4.1478 41 1 7.4697 2.5918 5.0438 42 1 6.7772 3.2078 2.7011 43 1 5.9478 4.1689 3.9495 44 1 2.4565 6.5738 -1.8802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609334048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:07 Heat of formation + Delta-G solvation = 151.488958 kcal Electronic energy + Delta-G solvation = -26552.857718 eV Core-core repulsion = 22928.978122 eV Total energy + Delta-G solvation = -3623.879596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.171 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.79964 -39.48751 -38.26116 -36.26531 -34.09188 -33.17384 -32.11297 -30.37310 -30.34068 -30.10967 -29.24084 -25.54707 -24.95813 -24.01523 -22.53396 -22.28584 -21.80591 -21.13050 -19.80309 -18.64450 -17.88153 -16.94767 -16.67095 -16.57167 -15.55199 -15.13929 -14.88607 -14.52862 -14.25068 -14.11009 -13.91800 -13.63474 -13.55526 -13.23691 -12.96940 -12.82132 -12.43292 -12.41009 -11.87930 -11.74211 -11.64639 -11.31816 -11.18765 -11.12591 -10.87192 -10.67076 -10.44080 -10.36973 -10.17230 -10.01041 -9.92814 -9.80134 -9.67473 -9.40051 -8.62712 -7.89312 -6.88507 -5.95182 -3.38285 0.70385 0.84899 1.68628 2.60548 2.84413 3.28728 3.36774 3.37357 3.38595 3.50398 4.09956 4.36394 4.51249 4.63671 4.83345 4.95699 5.10440 5.13358 5.21952 5.22633 5.25655 5.33737 5.42401 5.49499 5.65895 5.75951 5.77453 5.85140 5.93091 5.96240 6.09019 6.13476 6.18790 6.23692 6.26562 6.36190 6.37785 6.50233 6.67654 6.79991 7.06028 7.18670 7.43250 7.65806 7.66010 8.00706 8.27874 9.04069 9.66485 10.21403 11.13702 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.003340 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.941216 B = 8382.177535 C = 9333.712093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C 0.268 3.732 4 C -0.324 4.324 5 C 0.495 3.505 6 N -0.694 5.694 7 C 0.151 3.849 8 C -0.154 4.154 9 C 0.173 3.827 10 N -0.591 5.591 11 C -0.260 4.260 12 H 0.067 0.933 13 C 0.006 3.994 14 N -0.900 5.900 15 Si 0.903 3.097 16 H -0.287 1.287 17 H -0.290 1.290 18 H -0.278 1.278 19 C 0.150 3.850 20 C -0.140 4.140 21 N -0.366 5.366 22 N -0.358 5.358 23 C 0.254 3.746 24 N -0.547 5.547 25 C 0.487 3.513 26 N -0.514 5.514 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.169 0.831 33 H 0.412 0.588 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.024 0.976 38 H 0.093 0.907 39 H 0.256 0.744 40 H 0.023 0.977 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 1.769 -14.024 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C 0.111 3.889 4 C -0.358 4.358 5 C 0.268 3.732 6 N -0.319 5.319 7 C 0.048 3.952 8 C -0.195 4.195 9 C 0.047 3.953 10 N -0.314 5.314 11 C -0.389 4.389 12 H 0.085 0.915 13 C -0.193 4.193 14 N -0.544 5.544 15 Si 0.732 3.268 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.203 1.203 19 C 0.022 3.978 20 C -0.180 4.180 21 N -0.152 5.152 22 N -0.189 5.189 23 C -0.049 4.049 24 N -0.282 5.282 25 C 0.127 3.873 26 N -0.237 5.237 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.186 0.814 33 H 0.248 0.752 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.111 0.889 39 H 0.066 0.934 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.208 2.053 -14.431 14.925 hybrid contribution 0.671 1.027 1.566 1.990 sum -2.537 3.080 -12.865 13.469 Atomic orbital electron populations 1.21688 0.93364 1.02178 1.03055 1.20614 0.97557 0.88731 1.04309 1.21489 0.86441 0.95478 0.85501 1.21290 1.11974 0.93481 1.09016 1.18136 0.86580 0.87303 0.81210 1.45351 1.44519 1.16023 1.26021 1.21475 0.95480 0.92569 0.85684 1.22741 0.97011 1.02986 0.96738 1.20785 0.87184 0.92450 0.94898 1.44096 1.03670 1.81071 1.02523 1.19187 1.18086 1.20239 0.81377 0.91505 1.25045 1.00725 0.95385 0.98120 1.70009 1.33416 1.18001 1.32963 0.86275 0.78001 0.78036 0.84448 1.21394 1.21638 1.20324 1.20840 0.92680 0.95049 0.89209 1.22385 0.94174 1.01878 0.99564 1.48859 1.34480 1.10199 1.21614 1.78282 1.29758 0.89190 1.21637 1.26119 0.89597 0.98548 0.90621 1.70932 1.30784 0.98103 1.28390 1.22846 0.86915 0.92506 0.85019 1.67745 1.29849 0.98277 1.27815 0.91833 0.92576 0.91323 0.88872 0.88961 0.81363 0.75162 0.89413 0.91999 0.92485 0.95824 0.88879 0.93437 0.95891 0.91931 0.92196 0.91433 0.75707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.77 37.16 0.36 -0.91 16 2 C -0.07 -0.65 6.34 -27.88 -0.18 -0.83 16 3 C 0.27 3.29 6.21 -82.29 -0.51 2.78 16 4 C -0.32 -4.02 8.46 -39.23 -0.33 -4.35 16 5 C 0.50 6.86 7.74 -152.97 -1.18 5.68 16 6 N -0.69 -9.02 5.19 -53.48 -0.28 -9.29 16 7 C 0.15 2.08 2.10 -67.89 -0.14 1.94 16 8 C -0.15 -2.52 5.58 -26.61 -0.15 -2.67 16 9 C 0.17 3.61 5.31 -3.71 -0.02 3.59 16 10 N -0.59 -13.20 2.99 -172.32 -0.52 -13.72 16 11 C -0.26 -6.59 9.58 -15.06 -0.14 -6.73 16 12 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 13 C 0.01 0.17 4.90 -17.43 -0.09 0.08 16 14 N -0.90 -24.36 11.22 55.49 0.62 -23.74 16 15 Si 0.90 20.58 29.59 -169.99 -5.03 15.55 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 19 C 0.15 2.69 6.51 -3.71 -0.02 2.66 16 20 C -0.14 -2.01 5.55 -26.61 -0.15 -2.15 16 21 N -0.37 -5.58 3.93 -12.98 -0.05 -5.63 16 22 N -0.36 -5.23 12.76 29.26 0.37 -4.85 16 23 C 0.25 3.30 12.98 -91.97 -1.19 2.10 16 24 N -0.55 -8.69 11.26 -15.67 -0.18 -8.87 16 25 C 0.49 7.92 9.00 -323.17 -2.91 5.01 16 26 N -0.51 -7.70 10.00 -10.18 -0.10 -7.81 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.69 7.95 -51.93 -0.41 0.27 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.66 7.90 -51.93 -0.41 0.25 16 32 H 0.17 1.84 6.09 -52.49 -0.32 1.52 16 33 H 0.41 5.26 8.71 -40.82 -0.36 4.90 16 34 H 0.09 1.16 6.50 -51.93 -0.34 0.83 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.87 7.69 -51.93 -0.40 0.47 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 39 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.23 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 356.54 15.07 5.37 5.37 Total: -1.00 -30.38 356.54 -12.75 -43.14 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.32 Total: 3.65 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: -6.65 Total: 6.20 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -0.13 Total: -73.91 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.38 -12.75 -43.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.626 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds