Wall clock time and date at job start Tue Mar 31 2020 11:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47518 * 2 1 4 4 C 1.50702 * 109.47025 * 119.99738 * 2 1 3 5 5 C 1.38243 * 120.00056 * 119.99718 * 4 2 1 6 6 C 1.38236 * 119.99868 * 180.02562 * 5 4 2 7 7 C 1.38235 * 119.99970 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99393 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47532 * 89.99894 * 8 7 6 10 10 C 1.50698 * 109.47335 * 179.97438 * 9 8 7 11 11 O 1.20830 * 119.99657 * 0.02562 * 10 9 8 12 12 O 1.34225 * 119.99926 * 179.97438 * 10 9 8 13 13 C 1.45206 * 117.00038 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47242 * 180.02562 * 13 12 10 15 15 C 1.50702 * 115.55234 * 65.10414 * 14 13 12 16 16 H 1.07991 * 119.99998 * 266.10996 * 15 14 13 17 17 C 1.37874 * 119.99495 * 86.11124 * 15 14 13 18 18 N 1.31520 * 120.00529 * 353.69839 * 17 15 14 19 19 Si 1.86804 * 119.99967 * 173.70632 * 17 15 14 20 20 H 1.48496 * 109.47224 * 89.99407 * 19 17 15 21 21 H 1.48495 * 109.47017 * 209.99798 * 19 17 15 22 22 H 1.48508 * 109.46414 * 329.99398 * 19 17 15 23 23 C 1.53006 * 117.49835 * 279.43786 * 14 13 12 24 24 C 1.52999 * 117.49669 * 210.78173 * 14 13 12 25 25 C 1.38229 * 119.99877 * 0.25169 * 7 6 5 26 26 C 1.38230 * 120.00516 * 359.49204 * 25 7 6 27 27 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47283 * 300.00287 * 1 2 3 29 29 H 1.08996 * 109.46779 * 60.00462 * 1 2 3 30 30 H 1.08998 * 109.47024 * 239.99377 * 2 1 3 31 31 H 1.08997 * 109.47195 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46626 * 299.99817 * 3 2 1 33 33 H 1.08996 * 109.46750 * 59.99546 * 3 2 1 34 34 H 1.08000 * 119.99758 * 0.02562 * 5 4 2 35 35 H 1.08003 * 119.99673 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.46281 * 209.99938 * 8 7 6 37 37 H 1.08994 * 109.47249 * 329.99097 * 8 7 6 38 38 H 1.09004 * 109.47037 * 299.99798 * 9 8 7 39 39 H 1.09006 * 109.46936 * 59.99714 * 9 8 7 40 40 H 1.09005 * 109.46947 * 300.00350 * 13 12 10 41 41 H 1.09006 * 109.46730 * 60.00046 * 13 12 10 42 42 H 0.96996 * 120.00311 * 180.02562 * 18 17 15 43 43 H 1.09000 * 117.49306 * 359.97438 * 23 14 13 44 44 H 1.08992 * 117.50187 * 145.02005 * 23 14 13 45 45 H 1.09004 * 117.49367 * 214.98355 * 24 14 13 46 46 H 1.08998 * 117.49992 * 359.96526 * 24 14 13 47 47 H 1.08008 * 119.99350 * 179.72773 * 25 7 6 48 48 H 1.08000 * 120.00561 * 180.22784 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8270 -1.8344 1.1038 6 6 3.2873 -2.4863 2.2325 7 6 2.9525 -2.0145 3.4880 8 6 3.4539 -2.7256 4.7184 9 6 4.8015 -2.1337 5.1361 10 6 5.3026 -2.8444 6.3669 11 8 4.6490 -3.7335 6.8592 12 8 6.4753 -2.4904 6.9156 13 6 6.8956 -3.2184 8.0996 14 6 8.2446 -2.6782 8.5783 15 6 8.2386 -1.2510 9.0621 16 1 8.4879 -0.4495 8.3826 17 6 7.9149 -0.9686 10.3722 18 7 7.4918 -1.9276 11.1665 19 14 8.0769 0.7764 11.0191 20 1 6.7997 1.5035 10.8071 21 1 8.3905 0.7392 12.4701 22 1 9.1697 1.4734 10.2941 23 6 9.5002 -3.1749 7.8586 24 6 9.1896 -3.6573 9.2777 25 6 2.1532 -0.8939 3.6147 26 6 1.6972 -0.2389 2.4860 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 3.0882 -2.2032 0.1229 35 1 3.9079 -3.3647 2.1334 36 1 2.7353 -2.6004 5.5284 37 1 3.5749 -3.7867 4.5009 38 1 5.5201 -2.2588 4.3261 39 1 4.6804 -1.0724 5.3537 40 1 6.1531 -3.0907 8.8873 41 1 6.9923 -4.2773 7.8596 42 1 7.2637 -1.7289 12.0881 43 1 9.3650 -3.8868 7.0444 44 1 10.3219 -2.4695 7.7354 45 1 9.8072 -3.2690 10.0877 46 1 8.8500 -4.6861 9.3973 47 1 1.8880 -0.5279 4.5956 48 1 1.0757 0.6388 2.5850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744275949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:05 Heat of formation + Delta-G solvation = -68.202104 kcal Electronic energy + Delta-G solvation = -25239.557304 eV Core-core repulsion = 21645.106030 eV Total energy + Delta-G solvation = -3594.451274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.05804 -39.57763 -36.91437 -36.16736 -35.21160 -33.20651 -31.96170 -31.06939 -29.41848 -27.46222 -26.95492 -25.43339 -24.62391 -23.01754 -21.96535 -21.17540 -20.18798 -19.88941 -19.25202 -17.19599 -16.56124 -16.37285 -16.08137 -15.50106 -15.37798 -15.02740 -14.63559 -14.30143 -13.95750 -13.90153 -13.83092 -13.63274 -13.35547 -13.00748 -12.86002 -12.56548 -12.18674 -12.04529 -11.97166 -11.73719 -11.57718 -11.53915 -11.36922 -11.06084 -10.98720 -10.87430 -10.84841 -10.79301 -10.53486 -10.29160 -10.00838 -9.83860 -9.55747 -9.03917 -8.82502 -8.64152 -8.46881 -8.21052 -6.07443 -4.12683 1.17933 1.28461 2.78728 3.27820 3.33395 3.35196 3.38818 3.65548 4.37611 4.38658 4.49433 4.77768 4.80917 4.87435 4.88405 5.04263 5.10901 5.14632 5.21261 5.25232 5.29592 5.32513 5.37342 5.50281 5.50964 5.56956 5.64641 5.70573 5.78937 5.87604 5.90568 5.91467 5.98731 6.01010 6.13160 6.24610 6.30944 6.33482 6.47682 6.53134 6.55183 6.66259 6.73367 6.88233 7.02897 7.27787 7.36639 7.48041 7.85866 8.35952 8.46763 8.89076 9.53102 11.01927 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.017508 B = 0.002334 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.918679 B =11991.636499 C =12758.117017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.083 4.083 5 C -0.117 4.117 6 C -0.112 4.112 7 C -0.082 4.082 8 C -0.069 4.069 9 C -0.108 4.108 10 C 0.452 3.548 11 O -0.526 6.526 12 O -0.338 6.338 13 C 0.115 3.885 14 C 0.036 3.964 15 C -0.489 4.489 16 H 0.063 0.937 17 C 0.068 3.932 18 N -0.882 5.882 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.205 4.205 24 C -0.145 4.145 25 C -0.112 4.112 26 C -0.113 4.113 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.261 0.739 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.123 0.877 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 2.263 -20.892 24.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.083 4.083 5 C -0.135 4.135 6 C -0.130 4.130 7 C -0.082 4.082 8 C -0.107 4.107 9 C -0.146 4.146 10 C 0.296 3.704 11 O -0.416 6.416 12 O -0.253 6.253 13 C 0.042 3.958 14 C 0.036 3.964 15 C -0.527 4.527 16 H 0.081 0.919 17 C -0.135 4.135 18 N -0.518 5.518 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.242 4.242 24 C -0.182 4.182 25 C -0.130 4.130 26 C -0.131 4.131 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.141 0.859 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.802 1.963 -20.503 23.739 hybrid contribution 0.032 0.735 0.650 0.981 sum -11.770 2.697 -19.854 23.237 Atomic orbital electron populations 1.21860 0.94418 1.01984 1.01880 1.20121 0.95884 0.96083 0.95418 1.21863 1.01373 0.95079 1.01881 1.19841 0.98033 0.95861 0.94605 1.21021 0.98359 0.95690 0.98457 1.21068 0.99976 1.00098 0.91893 1.19863 0.97705 0.95972 0.94631 1.20404 0.95546 0.99685 0.95029 1.21306 0.97472 1.01520 0.94283 1.23565 0.80028 0.81574 0.85252 1.90612 1.57424 1.30740 1.62850 1.86522 1.35502 1.60078 1.43225 1.22894 0.98570 0.91526 0.82781 1.18789 0.84622 0.95339 0.97673 1.20381 1.47328 0.89958 0.95007 0.91874 1.25024 0.94457 0.97139 0.96899 1.70002 1.43213 1.32078 1.06532 0.86588 0.78577 0.84796 0.78049 1.20606 1.21156 1.19728 1.23009 1.02817 1.03729 0.94694 1.22533 1.04332 0.97233 0.94124 1.21099 0.97774 0.95310 0.98777 1.20936 1.00385 0.99905 0.91893 0.92565 0.92423 0.92482 0.90618 0.92430 0.92495 0.92391 0.86293 0.85970 0.89973 0.90094 0.88030 0.87793 0.90664 0.94357 0.92909 0.91573 0.90059 0.89409 0.91650 0.85882 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.01 37.16 0.33 -0.58 16 2 C -0.06 -0.40 3.09 -91.77 -0.28 -0.69 16 3 C -0.14 -0.96 9.01 37.16 0.33 -0.63 16 4 C -0.08 -0.75 4.78 -104.62 -0.50 -1.25 16 5 C -0.12 -1.09 9.67 -39.58 -0.38 -1.47 16 6 C -0.11 -1.13 9.70 -39.58 -0.38 -1.52 16 7 C -0.08 -0.89 5.13 -104.63 -0.54 -1.43 16 8 C -0.07 -0.84 4.64 -27.88 -0.13 -0.97 16 9 C -0.11 -1.46 5.79 -27.89 -0.16 -1.62 16 10 C 0.45 8.53 7.96 36.00 0.29 8.82 16 11 O -0.53 -11.12 15.73 -18.75 -0.30 -11.41 16 12 O -0.34 -7.43 10.16 -39.24 -0.40 -7.83 16 13 C 0.12 2.77 5.29 37.16 0.20 2.96 16 14 C 0.04 0.91 1.62 -155.66 -0.25 0.65 16 15 C -0.49 -13.38 8.78 -34.44 -0.30 -13.68 16 16 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 17 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 18 N -0.88 -24.96 12.88 55.43 0.71 -24.24 16 19 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.21 -4.49 9.96 -26.69 -0.27 -4.76 16 24 C -0.14 -3.38 9.37 -26.70 -0.25 -3.63 16 25 C -0.11 -1.16 9.70 -39.59 -0.38 -1.55 16 26 C -0.11 -1.07 8.71 -39.58 -0.34 -1.42 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.37 7.39 -51.93 -0.38 -0.02 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.49 7.88 -51.93 -0.41 0.08 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.39 7.39 -51.93 -0.38 0.00 16 34 H 0.12 0.88 7.95 -52.49 -0.42 0.47 16 35 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 36 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 37 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.99 8.13 -51.93 -0.42 1.57 16 41 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 45 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 46 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 47 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 48 H 0.12 0.95 7.10 -52.49 -0.37 0.57 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -30.35 400.90 -10.34 -40.70 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.26 Total: 1.69 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -3.12 Total: -21.00 kcal Atomic # 7 Polarization: -24.96 SS G_CDS: 0.71 Total: -24.24 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.69 Total: -19.24 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.35 -10.34 -40.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744275949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.506 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds