Wall clock time and date at job start Tue Mar 31 2020 11:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46990 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99630 * 2 1 3 5 5 H 1.09006 * 109.46995 * 303.10350 * 4 2 1 6 6 C 1.53000 * 109.47271 * 183.09981 * 4 2 1 7 7 C 1.50702 * 109.47067 * 174.31573 * 6 4 2 8 8 O 1.20827 * 119.99700 * 354.16694 * 7 6 4 9 9 O 1.34226 * 120.00084 * 174.16421 * 7 6 4 10 10 C 1.45201 * 117.00024 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46967 * 180.02562 * 10 9 7 12 12 C 1.50701 * 115.54742 * 300.46525 * 11 10 9 13 13 H 1.07998 * 119.99900 * 95.38946 * 12 11 10 14 14 C 1.37877 * 120.00151 * 275.11712 * 12 11 10 15 15 N 1.31517 * 120.00011 * 355.52659 * 14 12 11 16 16 Si 1.86797 * 120.00434 * 175.52687 * 14 12 11 17 17 H 1.48505 * 109.47094 * 89.99689 * 16 14 12 18 18 H 1.48497 * 109.47519 * 210.00281 * 16 14 12 19 19 H 1.48507 * 109.46977 * 330.00078 * 16 14 12 20 20 C 1.53000 * 117.50040 * 86.13754 * 11 10 9 21 21 C 1.52999 * 117.49963 * 154.79775 * 11 10 9 22 22 C 1.50696 * 109.46929 * 63.09646 * 4 2 1 23 23 C 1.38239 * 120.00026 * 59.72977 * 22 4 2 24 24 C 1.38238 * 120.00379 * 179.78354 * 23 22 4 25 25 C 1.38234 * 119.99464 * 0.44726 * 24 23 22 26 26 C 1.38227 * 120.00334 * 359.80584 * 25 24 23 27 27 C 1.38234 * 120.00186 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47048 * 300.00897 * 1 2 3 29 29 H 1.09007 * 109.46829 * 59.99891 * 1 2 3 30 30 H 1.08996 * 109.47201 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47053 * 240.00034 * 2 1 3 32 32 H 1.09002 * 109.47454 * 306.21056 * 3 2 1 33 33 H 1.08992 * 109.47648 * 66.21954 * 3 2 1 34 34 H 1.09012 * 109.47234 * 186.22050 * 3 2 1 35 35 H 1.09002 * 109.46838 * 54.31888 * 6 4 2 36 36 H 1.08999 * 109.47159 * 294.31520 * 6 4 2 37 37 H 1.08994 * 109.47381 * 60.00103 * 10 9 7 38 38 H 1.08996 * 109.46851 * 299.99729 * 10 9 7 39 39 H 0.96993 * 120.00280 * 180.02562 * 15 14 12 40 40 H 1.09004 * 117.49348 * 215.00321 * 20 11 10 41 41 H 1.08998 * 117.50045 * 0.02562 * 20 11 10 42 42 H 1.09002 * 117.49671 * 359.97207 * 21 11 10 43 43 H 1.09001 * 117.49944 * 144.96811 * 21 11 10 44 44 H 1.08008 * 119.99929 * 359.97438 * 23 22 4 45 45 H 1.07999 * 119.99987 * 180.27095 * 24 23 22 46 46 H 1.08003 * 119.99630 * 179.83411 * 25 24 23 47 47 H 1.07999 * 119.99978 * 180.02562 * 26 25 24 48 48 H 1.08001 * 120.00434 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6319 -0.2404 2.1384 6 6 3.5680 -0.6540 1.2889 7 6 4.0631 -1.2403 2.5859 8 8 3.2744 -1.5710 3.4394 9 8 5.3803 -1.3952 2.7929 10 6 5.7849 -1.9668 4.0649 11 6 7.3109 -2.0644 4.1177 12 6 7.9458 -2.9076 3.0421 13 1 8.3197 -2.4428 2.1418 14 6 8.0545 -4.2718 3.2098 15 7 7.6851 -4.8265 4.3436 16 14 8.7265 -5.3324 1.8267 17 1 10.2007 -5.4483 1.9633 18 1 8.1151 -6.6838 1.8972 19 1 8.3981 -4.7081 0.5199 20 6 8.0815 -0.8324 4.5966 21 6 7.9715 -2.0649 5.4978 22 6 1.6013 -2.1624 1.2116 23 6 1.9940 -2.9773 0.1662 24 6 1.5953 -4.3005 0.1338 25 6 0.7963 -4.8064 1.1421 26 6 0.3993 -3.9902 2.1847 27 6 0.8018 -2.6682 2.2194 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.5887 1.9875 -0.8292 33 1 1.7705 1.9232 0.9403 34 1 3.1244 1.4446 -0.1114 35 1 3.8880 0.3853 1.2144 36 1 3.9785 -1.2213 0.4536 37 1 5.3530 -2.9620 4.1699 38 1 5.4336 -1.3306 4.8772 39 1 7.7618 -5.7861 4.4617 40 1 9.0477 -0.6319 4.1336 41 1 7.5014 0.0475 4.8745 42 1 7.3189 -1.9952 6.3681 43 1 8.8650 -2.6755 5.6278 44 1 2.6148 -2.5809 -0.6237 45 1 1.9057 -4.9382 -0.6806 46 1 0.4826 -5.8395 1.1154 47 1 -0.2245 -4.3856 2.9726 48 1 0.4913 -2.0304 3.0338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:58 Heat of formation + Delta-G solvation = -58.724682 kcal Electronic energy + Delta-G solvation = -27016.167723 eV Core-core repulsion = 23422.127421 eV Total energy + Delta-G solvation = -3594.040302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.26479 -39.06887 -37.00547 -36.43799 -35.11011 -31.93597 -31.88336 -30.74437 -29.95395 -27.19101 -26.83749 -25.37500 -24.48291 -22.60462 -21.63137 -21.15464 -20.30763 -19.32509 -19.19442 -16.97441 -16.93520 -16.44924 -15.79449 -15.44027 -15.19863 -14.64326 -14.52217 -14.40754 -14.22658 -13.79487 -13.71948 -13.21381 -12.98028 -12.84099 -12.46202 -12.33911 -12.22001 -12.06337 -11.85070 -11.59042 -11.42216 -11.35572 -11.00389 -10.97853 -10.94028 -10.85463 -10.55814 -10.52001 -10.42850 -10.25351 -9.89276 -9.79935 -9.43395 -8.92376 -8.71456 -8.49274 -8.41634 -8.15529 -6.03975 -4.09446 1.52756 1.61020 2.87095 3.29243 3.36470 3.39794 3.41960 3.94695 4.40816 4.58063 4.65960 4.81118 5.03645 5.08403 5.14050 5.21357 5.25397 5.25873 5.32524 5.40842 5.48285 5.50167 5.61136 5.67404 5.69663 5.76146 5.78207 5.80605 5.94476 5.99638 6.01081 6.14196 6.19243 6.22604 6.26113 6.29386 6.34739 6.54089 6.63437 6.68574 6.70112 6.76927 6.82828 7.06891 7.18415 7.29196 7.40070 7.55254 7.88323 8.38996 8.54148 8.91582 9.55987 11.04923 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.012355 B = 0.004173 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.831124 B = 6707.919657 C = 7671.276309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.153 4.153 4 C -0.032 4.032 5 H 0.088 0.912 6 C -0.113 4.113 7 C 0.451 3.549 8 O -0.518 6.518 9 O -0.337 6.337 10 C 0.119 3.881 11 C 0.035 3.965 12 C -0.486 4.486 13 H 0.062 0.938 14 C 0.069 3.931 15 N -0.882 5.882 16 Si 0.890 3.110 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.208 4.208 21 C -0.140 4.140 22 C -0.066 4.066 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.090 4.090 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.038 0.962 39 H 0.260 0.740 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.305 7.710 -8.369 18.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.106 4.106 3 C -0.210 4.210 4 C -0.051 4.051 5 H 0.106 0.894 6 C -0.150 4.150 7 C 0.294 3.706 8 O -0.408 6.408 9 O -0.252 6.252 10 C 0.045 3.955 11 C 0.034 3.966 12 C -0.524 4.524 13 H 0.080 0.920 14 C -0.134 4.134 15 N -0.519 5.519 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.245 4.245 21 C -0.178 4.178 22 C -0.066 4.066 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.141 4.141 27 C -0.108 4.108 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.510 7.411 -7.988 18.146 hybrid contribution 0.404 -0.922 -0.392 1.081 sum -14.106 6.488 -8.380 17.644 Atomic orbital electron populations 1.21816 0.94860 1.02067 1.01466 1.21151 0.96143 0.95941 0.97325 1.21957 1.01395 0.95729 1.01966 1.20112 0.93020 0.92589 0.99342 0.89356 1.21538 0.95591 1.03206 0.94684 1.23491 0.81902 0.76028 0.89159 1.90597 1.56788 1.47392 1.46001 1.86526 1.23690 1.73635 1.41385 1.22785 0.96741 0.96564 0.79386 1.18786 0.87325 0.95188 0.95289 1.20348 1.38763 0.90926 1.02319 0.91990 1.24999 0.95020 0.97964 0.95442 1.70001 1.47230 1.11071 1.23570 0.86618 0.78967 0.79801 0.82818 1.20618 1.21193 1.19699 1.23026 1.02360 0.91914 1.07176 1.22511 1.02863 0.99162 0.93245 1.19650 0.97232 0.95113 0.94638 1.20968 1.00314 0.93977 0.98430 1.21058 0.98454 0.95449 0.99010 1.21080 0.98898 0.99451 0.94981 1.21102 1.00605 0.94145 0.98234 1.20980 0.97033 0.95413 0.97414 0.92710 0.92839 0.92359 0.90748 0.92556 0.92456 0.92073 0.87493 0.87987 0.91240 0.94417 0.92990 0.90139 0.91686 0.91852 0.89153 0.86346 0.86423 0.86587 0.86496 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.99 37.16 0.33 -0.95 16 2 C -0.09 -0.82 2.37 -90.62 -0.21 -1.03 16 3 C -0.15 -1.26 8.56 37.16 0.32 -0.94 16 4 C -0.03 -0.39 1.28 -91.77 -0.12 -0.51 16 5 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 6 C -0.11 -1.53 4.93 -27.88 -0.14 -1.67 16 7 C 0.45 8.57 7.64 36.01 0.28 8.85 16 8 O -0.52 -10.76 14.22 -18.75 -0.27 -11.03 16 9 O -0.34 -7.49 10.06 -39.25 -0.39 -7.89 16 10 C 0.12 2.86 5.31 37.16 0.20 3.05 16 11 C 0.03 0.87 1.72 -155.66 -0.27 0.60 16 12 C -0.49 -13.38 8.67 -34.44 -0.30 -13.68 16 13 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 14 C 0.07 1.90 5.43 -17.82 -0.10 1.80 16 15 N -0.88 -25.18 12.66 55.43 0.70 -24.48 16 16 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.21 -4.58 9.95 -26.69 -0.27 -4.85 16 21 C -0.14 -3.32 9.18 -26.69 -0.24 -3.57 16 22 C -0.07 -0.91 2.73 -104.62 -0.29 -1.19 16 23 C -0.12 -1.59 8.61 -39.58 -0.34 -1.93 16 24 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 25 C -0.13 -1.66 10.05 -39.59 -0.40 -2.06 16 26 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 27 C -0.09 -1.29 8.82 -39.58 -0.35 -1.64 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.57 7.32 -51.93 -0.38 0.19 16 31 H 0.07 0.68 7.27 -51.93 -0.38 0.30 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.49 6.61 -51.92 -0.34 0.14 16 35 H 0.11 1.21 6.20 -51.93 -0.32 0.89 16 36 H 0.10 1.32 7.22 -51.93 -0.38 0.95 16 37 H 0.07 1.85 8.13 -51.93 -0.42 1.43 16 38 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.09 2.27 8.14 -51.93 -0.42 1.84 16 44 H 0.12 1.38 7.05 -52.48 -0.37 1.01 16 45 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 47 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 48 H 0.12 1.65 7.95 -52.49 -0.42 1.23 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -30.70 390.99 -9.79 -40.50 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.02 Total: 4.49 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.69 Total: -23.78 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.70 Total: -24.48 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.66 Total: -18.92 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.70 -9.79 -40.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.227 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds