Wall clock time and date at job start Tue Mar 31 2020 11:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38251 * 120.00344 * 2 1 4 4 C 1.38217 * 120.00441 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99238 * 359.97387 * 4 3 2 6 6 C 1.38213 * 120.00554 * 359.81430 * 5 4 3 7 7 C 1.38216 * 119.99973 * 180.02562 * 2 1 3 8 8 C 1.50699 * 119.99692 * 359.97438 * 7 2 1 9 9 C 1.50705 * 109.47437 * 62.54226 * 8 7 2 10 10 O 1.20825 * 120.00269 * 239.48588 * 9 8 7 11 11 O 1.34231 * 119.99835 * 59.48031 * 9 8 7 12 12 C 1.45194 * 116.99946 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47105 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.47050 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99943 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99508 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00092 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46934 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47320 * 119.99886 * 18 16 14 21 21 H 1.48503 * 109.47027 * 240.00089 * 18 16 14 22 22 C 1.53002 * 109.47160 * 182.54310 * 8 7 2 23 23 C 1.53002 * 109.47179 * 180.02562 * 22 8 7 24 24 C 1.52997 * 109.46820 * 299.99626 * 23 22 8 25 25 C 1.52998 * 109.47204 * 60.00454 * 24 23 22 26 26 C 1.52999 * 109.47061 * 299.99829 * 25 24 23 27 27 H 1.08994 * 109.47343 * 271.86738 * 1 2 3 28 28 H 1.09000 * 109.46539 * 31.86733 * 1 2 3 29 29 H 1.08998 * 109.46956 * 151.86142 * 1 2 3 30 30 H 1.07999 * 119.99779 * 359.97087 * 3 2 1 31 31 H 1.08000 * 120.00324 * 179.97438 * 4 3 2 32 32 H 1.08007 * 119.99447 * 179.97438 * 5 4 3 33 33 H 1.07999 * 119.99660 * 180.23382 * 6 5 4 34 34 H 1.08996 * 109.47347 * 300.00156 * 12 11 9 35 35 H 1.08999 * 109.47049 * 60.00216 * 12 11 9 36 36 H 1.08996 * 109.47242 * 300.00339 * 13 12 11 37 37 H 1.08999 * 109.46895 * 60.00240 * 13 12 11 38 38 H 0.97004 * 119.99454 * 180.02562 * 17 16 14 39 39 H 1.09007 * 109.46705 * 300.00024 * 22 8 7 40 40 H 1.09000 * 109.47309 * 59.99735 * 22 8 7 41 41 H 1.09002 * 109.46730 * 180.02562 * 23 22 8 42 42 H 1.09000 * 109.46964 * 60.00127 * 23 22 8 43 43 H 1.09000 * 109.47033 * 300.00164 * 24 23 22 44 44 H 1.09005 * 109.47015 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.47300 * 180.02562 * 25 24 23 46 46 H 1.09000 * 109.46891 * 59.99668 * 25 24 23 47 47 H 1.09000 * 109.47100 * 300.00243 * 26 25 24 48 48 H 1.08998 * 109.47188 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5806 1.1973 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5806 -1.1970 0.0060 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 6 0.6255 -2.6093 -1.2610 10 8 -0.5751 -2.7270 -1.1932 11 8 1.2298 -2.5738 -2.4591 12 6 0.3783 -2.6819 -3.6302 13 6 1.2390 -2.6218 -4.8938 14 6 0.3554 -2.7345 -6.1093 15 1 -0.7132 -2.8382 -5.9923 16 6 0.9112 -2.7053 -7.3708 17 7 2.2126 -2.5795 -7.5132 18 14 -0.1842 -2.8443 -8.8775 19 1 -1.6000 -2.9762 -8.4497 20 1 -0.0309 -1.6276 -9.7149 21 1 0.2077 -4.0403 -9.6657 22 6 2.4375 -3.6643 0.0628 23 6 1.6725 -4.9894 0.0622 24 6 0.7456 -5.0436 1.2783 25 6 -0.2474 -3.8814 1.2149 26 6 0.5176 -2.5564 1.2155 27 1 -0.3634 0.0335 1.0270 28 1 -0.3632 0.8728 -0.5426 29 1 -0.3633 -0.9062 -0.4846 30 1 1.6584 2.1326 -0.0005 31 1 4.1206 2.1326 0.0001 32 1 5.3517 -0.0001 0.0016 33 1 4.1206 -2.1323 0.0107 34 1 -0.1603 -3.6290 -3.6018 35 1 -0.3354 -1.8581 -3.6378 36 1 1.7774 -1.6744 -4.9220 37 1 1.9531 -3.4453 -4.8865 38 1 2.6036 -2.5586 -8.4007 39 1 3.0976 -3.6259 -0.8038 40 1 3.0300 -3.5869 0.9745 41 1 2.3799 -5.8173 0.1078 42 1 1.0804 -5.0666 -0.8498 43 1 1.3378 -4.9663 2.1901 44 1 0.2009 -5.9878 1.2781 45 1 -0.9074 -3.9197 2.0815 46 1 -0.8395 -3.9587 0.3030 47 1 1.1098 -2.4791 2.1273 48 1 -0.1898 -1.7284 1.1708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750148898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:58 Heat of formation + Delta-G solvation = -83.312247 kcal Electronic energy + Delta-G solvation = -27818.249362 eV Core-core repulsion = 24223.142863 eV Total energy + Delta-G solvation = -3595.106499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.45190 -39.10509 -37.65518 -35.96246 -33.44789 -33.31011 -32.57478 -30.63463 -30.21145 -28.98233 -26.93290 -25.40214 -24.12695 -22.95877 -22.07415 -21.37976 -20.85696 -20.44054 -19.27566 -17.22685 -16.76522 -16.34160 -15.97762 -15.71706 -15.20752 -15.02431 -14.65884 -14.48766 -14.16588 -13.98825 -13.68528 -13.27543 -13.12652 -13.05659 -12.67785 -12.47035 -12.34656 -12.11859 -12.06203 -11.96619 -11.69699 -11.33992 -11.16650 -11.07009 -10.99898 -10.91524 -10.86708 -10.67589 -10.56427 -10.18894 -9.98000 -9.91660 -9.62426 -9.52529 -9.26999 -8.76232 -8.52421 -8.44122 -6.09873 -4.14082 1.32864 1.42520 2.56498 3.18117 3.27398 3.35050 3.40248 3.78156 4.38836 4.44491 4.53944 4.66768 4.89754 4.94599 5.00900 5.08300 5.10868 5.14452 5.26753 5.28871 5.37657 5.41351 5.44654 5.52481 5.58573 5.64210 5.72918 5.76549 5.83020 5.90987 5.97210 6.03127 6.05920 6.09211 6.10133 6.17306 6.18346 6.23670 6.30310 6.47518 6.50981 6.53713 6.64746 6.66236 7.01905 7.07246 7.57487 7.63819 7.87665 8.20533 8.28891 8.91665 9.50252 11.01664 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.012471 B = 0.004084 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.712819 B = 6854.320740 C = 7901.177452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.120 4.120 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.102 4.102 7 C -0.075 4.075 8 C -0.005 4.005 9 C 0.476 3.524 10 O -0.511 6.511 11 O -0.349 6.349 12 C 0.074 3.926 13 C 0.026 3.974 14 C -0.525 4.525 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.110 4.110 23 C -0.126 4.126 24 C -0.119 4.119 25 C -0.136 4.136 26 C -0.107 4.107 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.071 0.929 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.929 1.994 21.002 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.134 4.134 5 C -0.143 4.143 6 C -0.120 4.120 7 C -0.075 4.075 8 C -0.006 4.006 9 C 0.320 3.680 10 O -0.402 6.402 11 O -0.264 6.264 12 C 0.002 3.998 13 C -0.011 4.011 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.147 4.147 23 C -0.163 4.163 24 C -0.156 4.156 25 C -0.173 4.173 26 C -0.144 4.144 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.090 0.910 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.713 1.965 20.823 20.986 hybrid contribution -0.535 0.044 -1.051 1.181 sum 1.178 2.009 19.772 19.908 Atomic orbital electron populations 1.21392 0.91414 1.04824 1.02477 1.19769 0.96066 0.92600 0.98793 1.20984 0.94308 0.97253 1.01240 1.21129 0.94243 0.98079 0.99914 1.21098 0.99820 0.92407 1.00967 1.21120 0.93199 0.98620 0.99043 1.19301 0.93631 0.92523 1.02013 1.19435 0.95486 0.94406 0.91308 1.23159 0.87148 0.71816 0.85876 1.90524 1.16057 1.45865 1.87726 1.86557 1.43271 1.81596 1.14983 1.23633 0.93616 1.00603 0.81965 1.19150 0.95392 0.98793 0.87805 1.21015 0.93606 1.51409 0.90293 0.92263 1.24979 0.95098 0.94902 0.99141 1.69990 1.10105 1.49565 1.23129 0.86438 0.80727 0.77758 0.82545 1.19584 1.20821 1.20818 1.21718 0.97025 0.92481 1.03484 1.21610 0.98727 0.97013 0.98978 1.21559 0.97571 0.98626 0.97870 1.21843 0.98164 0.93453 1.03888 1.21773 0.97959 0.99760 0.94918 0.90793 0.91591 0.89170 0.86108 0.86172 0.85997 0.85312 0.92409 0.92472 0.95426 0.95427 0.92792 0.89948 0.90294 0.91224 0.91862 0.92191 0.92055 0.92059 0.89006 0.91025 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.01 36.01 0.29 -1.62 16 2 C -0.07 -1.00 5.67 -104.62 -0.59 -1.59 16 3 C -0.12 -1.49 9.71 -39.58 -0.38 -1.87 16 4 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 5 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16 6 C -0.10 -1.29 8.98 -39.59 -0.36 -1.64 16 7 C -0.07 -1.03 4.68 -104.63 -0.49 -1.52 16 8 C -0.01 -0.07 0.45 -156.81 -0.07 -0.14 16 9 C 0.48 8.38 3.45 36.01 0.12 8.51 16 10 O -0.51 -9.59 11.72 -18.75 -0.22 -9.81 16 11 O -0.35 -7.18 10.05 -39.26 -0.39 -7.58 16 12 C 0.07 1.69 5.40 37.16 0.20 1.89 16 13 C 0.03 0.68 5.35 -27.88 -0.15 0.54 16 14 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 18 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.11 -1.32 3.34 -26.73 -0.09 -1.41 16 23 C -0.13 -1.50 5.70 -26.73 -0.15 -1.65 16 24 C -0.12 -1.26 5.92 -26.73 -0.16 -1.41 16 25 C -0.14 -1.62 5.63 -26.73 -0.15 -1.77 16 26 C -0.11 -1.28 4.09 -26.73 -0.11 -1.39 16 27 H 0.07 0.81 7.15 -51.93 -0.37 0.44 16 28 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 29 H 0.09 1.40 3.13 -51.93 -0.16 1.23 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.13 1.40 5.90 -52.49 -0.31 1.09 16 34 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 35 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.08 1.07 7.39 -51.93 -0.38 0.68 16 40 H 0.08 0.77 7.62 -51.93 -0.40 0.37 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.91 7.22 -51.93 -0.37 0.54 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.34 5.50 -51.93 -0.29 1.06 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 1.05 4.29 -51.93 -0.22 0.82 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -31.11 366.75 -10.21 -41.32 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.54 Total: 2.10 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -3.30 Total: -22.26 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.74 Total: -25.81 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.61 Total: -17.39 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.11 -10.21 -41.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750148898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.995 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds