Wall clock time and date at job start Tue Mar 31 2020 11:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38157 * 119.88719 * 2 1 4 4 C 1.38204 * 119.93265 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.93903 * 0.02562 * 4 3 2 6 6 C 1.38461 * 120.21205 * 359.96840 * 5 4 3 7 7 C 1.38257 * 119.84819 * 0.02947 * 6 5 4 8 8 C 1.51371 * 109.75082 * 180.02562 * 7 6 5 9 9 H 1.09007 * 110.38251 * 223.84789 * 8 7 6 10 10 C 1.52992 * 110.30451 * 101.73462 * 8 7 6 11 11 C 1.54345 * 105.16891 * 342.80642 * 8 7 6 12 12 C 1.51357 * 130.39565 * 180.02562 * 6 5 4 13 13 H 1.09009 * 110.30552 * 78.17452 * 12 6 5 14 14 C 1.53001 * 110.30578 * 316.11829 * 12 6 5 15 15 C 1.50705 * 109.47033 * 174.31886 * 14 12 6 16 16 O 1.20820 * 120.00259 * 354.35403 * 15 14 12 17 17 O 1.34228 * 119.99652 * 174.34799 * 15 14 12 18 18 C 1.45204 * 116.99942 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47170 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47331 * 180.02562 * 19 18 17 21 21 C 1.50693 * 109.47465 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00058 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00263 * 179.97438 * 21 20 19 24 24 N 1.31514 * 119.99678 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00005 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47317 * 90.00256 * 25 23 21 27 27 H 1.48512 * 109.46877 * 209.99597 * 25 23 21 28 28 H 1.48498 * 109.47364 * 329.99803 * 25 23 21 29 29 H 1.09003 * 109.47384 * 90.00388 * 1 2 3 30 30 H 1.09001 * 109.46815 * 209.99896 * 1 2 3 31 31 H 1.08999 * 109.47643 * 329.99688 * 1 2 3 32 32 H 1.08003 * 120.03346 * 0.25449 * 3 2 1 33 33 H 1.08005 * 120.03113 * 180.02562 * 4 3 2 34 34 H 1.07996 * 119.89485 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47490 * 304.25321 * 10 8 7 36 36 H 1.09007 * 109.47198 * 64.25340 * 10 8 7 37 37 H 1.09000 * 109.46933 * 184.25187 * 10 8 7 38 38 H 1.08994 * 110.82250 * 268.12419 * 11 8 7 39 39 H 1.09003 * 110.98804 * 144.65576 * 11 8 7 40 40 H 1.08996 * 109.46848 * 294.32095 * 14 12 6 41 41 H 1.08995 * 109.46970 * 54.32559 * 14 12 6 42 42 H 1.09002 * 109.46966 * 300.00520 * 18 17 15 43 43 H 1.09008 * 109.46867 * 60.00289 * 18 17 15 44 44 H 1.08998 * 109.47137 * 300.00429 * 19 18 17 45 45 H 1.09000 * 109.46896 * 60.00433 * 19 18 17 46 46 H 1.09002 * 109.46608 * 300.00266 * 20 19 18 47 47 H 1.09002 * 109.47110 * 59.99236 * 20 19 18 48 48 H 0.97000 * 119.99661 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.1978 0.0000 4 6 3.5774 1.1989 0.0005 5 6 4.2678 0.0024 0.0005 6 6 3.5797 -1.1991 0.0007 7 6 2.1971 -1.2002 0.0002 8 6 1.6867 -2.6253 0.0011 9 1 0.8651 -2.7347 -0.7070 10 6 1.2324 -3.0256 1.4061 11 6 2.8904 -3.4857 -0.4382 12 6 4.0924 -2.6232 0.0012 13 1 4.4174 -2.9079 1.0020 14 6 5.2457 -2.7727 -0.9931 15 6 5.8323 -4.1560 -0.8776 16 8 5.4443 -4.9067 -0.0140 17 8 6.7859 -4.5542 -1.7343 18 6 7.3056 -5.8993 -1.5635 19 6 8.3756 -6.1709 -2.6228 20 6 8.9228 -7.5884 -2.4432 21 6 9.9771 -7.8558 -3.4862 22 1 10.2313 -7.0913 -4.2055 23 6 10.6174 -9.0763 -3.5222 24 7 10.3082 -10.0071 -2.6459 25 14 11.9248 -9.4074 -4.8145 26 1 13.2541 -9.0054 -4.2883 27 1 11.9401 -10.8556 -5.1435 28 1 11.6198 -8.6248 -6.0391 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6541 2.1324 0.0042 33 1 4.1172 2.1344 0.0010 34 1 5.3478 0.0040 0.0005 35 1 2.0518 -2.8764 2.1092 36 1 0.3828 -2.4103 1.7024 37 1 0.9389 -4.0753 1.4076 38 1 2.8909 -3.6284 -1.5188 39 1 2.8930 -4.4458 0.0778 40 1 4.8741 -2.6190 -2.0061 41 1 6.0144 -2.0324 -0.7717 42 1 7.7449 -5.9957 -0.5706 43 1 6.4942 -6.6189 -1.6732 44 1 7.9366 -6.0743 -3.6157 45 1 9.1868 -5.4513 -2.5126 46 1 9.3616 -7.6853 -1.4502 47 1 8.1113 -8.3078 -2.5535 48 1 10.7589 -10.8656 -2.6710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753558033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:21 Heat of formation + Delta-G solvation = -100.621976 kcal Electronic energy + Delta-G solvation = -25415.812437 eV Core-core repulsion = 21819.955331 eV Total energy + Delta-G solvation = -3595.857105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04497 -40.00694 -36.99469 -36.15104 -34.05422 -33.95997 -31.89585 -31.48508 -29.87198 -27.94507 -27.24913 -26.57747 -24.68927 -23.18191 -22.21775 -21.07872 -20.68322 -20.32608 -19.38628 -17.51355 -16.69067 -16.45436 -16.34988 -16.01419 -15.65404 -15.11618 -14.95884 -14.47504 -14.29716 -14.05339 -13.83293 -13.42184 -13.14264 -13.01797 -12.87458 -12.76787 -12.39084 -12.25723 -12.18051 -12.09724 -11.97632 -11.79108 -11.56269 -11.26314 -10.98181 -10.95728 -10.87183 -10.76599 -10.65709 -10.62385 -10.36643 -10.30692 -9.71771 -9.50049 -9.16526 -8.83269 -8.78292 -8.38984 -6.03750 -4.06739 1.09016 1.10983 2.37262 2.91139 3.30815 3.36967 3.40586 3.46161 4.08765 4.19868 4.43356 4.55680 4.62018 4.63363 4.74127 4.85305 4.90381 4.99360 5.06796 5.15504 5.21400 5.27097 5.29745 5.32166 5.36542 5.39617 5.53379 5.57001 5.58744 5.60522 5.64582 5.71545 5.77631 5.88833 5.91631 6.01216 6.03181 6.08466 6.24874 6.28025 6.43003 6.53426 6.54350 6.74976 6.86664 6.99235 7.60086 7.71134 7.94264 7.96747 8.35926 8.99519 9.57491 11.07680 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.030471 B = 0.001955 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.675721 B =14322.230103 C =14872.243627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.085 4.085 7 C -0.086 4.086 8 C -0.053 4.053 9 H 0.079 0.921 10 C -0.140 4.140 11 C -0.112 4.112 12 C -0.037 4.037 13 H 0.099 0.901 14 C -0.108 4.108 15 C 0.457 3.543 16 O -0.511 6.511 17 O -0.360 6.360 18 C 0.068 3.932 19 C -0.109 4.109 20 C 0.024 3.976 21 C -0.521 4.521 22 H 0.057 0.943 23 C 0.056 3.944 24 N -0.894 5.894 25 Si 0.895 3.105 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.273 1.273 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.392 22.835 6.905 31.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.073 4.073 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.085 4.085 7 C -0.086 4.086 8 C -0.071 4.071 9 H 0.098 0.902 10 C -0.197 4.197 11 C -0.150 4.150 12 C -0.055 4.055 13 H 0.117 0.883 14 C -0.145 4.145 15 C 0.300 3.700 16 O -0.400 6.400 17 O -0.276 6.276 18 C -0.004 4.004 19 C -0.147 4.147 20 C -0.013 4.013 21 C -0.560 4.560 22 H 0.076 0.924 23 C -0.145 4.145 24 N -0.533 5.533 25 Si 0.723 3.277 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.198 1.198 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.037 0.963 47 H 0.038 0.962 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.440 22.379 7.202 31.153 hybrid contribution 0.882 -0.297 -0.585 1.100 sum -19.558 22.082 6.618 30.231 Atomic orbital electron populations 1.20809 0.91460 1.02715 1.02298 1.19432 0.95845 0.91860 1.00192 1.20927 0.94307 0.97113 1.01733 1.21007 0.94240 0.97706 1.00491 1.20644 0.99886 0.91239 1.01147 1.20465 0.94183 0.94153 0.99654 1.20373 0.93869 0.94248 1.00095 1.20623 0.98212 0.90211 0.98051 0.90233 1.21772 1.01199 1.01275 0.95458 1.22497 0.92298 0.98662 1.01522 1.20518 0.94258 0.90760 0.99931 0.88316 1.21458 0.98607 0.91838 1.02620 1.23560 0.77471 0.89996 0.79023 1.90644 1.59367 1.55571 1.34369 1.86502 1.50769 1.36053 1.54293 1.23486 0.97369 0.78172 1.01422 1.21762 0.95337 1.01188 0.96403 1.19052 0.95985 0.88641 0.97659 1.21173 1.20546 0.99241 1.14993 0.92431 1.25037 0.97226 0.96205 0.96066 1.69968 1.42360 1.05349 1.35665 0.86540 0.81906 0.77381 0.81855 1.20619 1.21190 1.19816 0.91247 0.91407 0.91702 0.86080 0.85906 0.86138 0.92346 0.92613 0.91955 0.90955 0.89376 0.87674 0.87649 0.91577 0.91552 0.92175 0.92179 0.96254 0.96240 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.87 36.00 0.36 -0.37 16 2 C -0.07 -0.62 5.88 -104.58 -0.62 -1.23 16 3 C -0.12 -0.97 9.69 -39.62 -0.38 -1.35 16 4 C -0.12 -0.93 10.05 -39.63 -0.40 -1.32 16 5 C -0.11 -0.98 9.69 -39.53 -0.38 -1.36 16 6 C -0.08 -0.82 5.60 -104.21 -0.58 -1.40 16 7 C -0.09 -0.80 5.32 -104.21 -0.55 -1.35 16 8 C -0.05 -0.45 2.84 -90.74 -0.26 -0.71 16 9 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 10 C -0.14 -1.10 9.11 37.15 0.34 -0.76 16 11 C -0.11 -1.11 5.38 -25.33 -0.14 -1.24 16 12 C -0.04 -0.37 2.47 -90.75 -0.22 -0.59 16 13 H 0.10 1.10 7.80 -51.92 -0.40 0.70 16 14 C -0.11 -1.11 5.15 -27.88 -0.14 -1.26 16 15 C 0.46 6.66 7.72 36.01 0.28 6.94 16 16 O -0.51 -8.64 14.88 -18.75 -0.28 -8.92 16 17 O -0.36 -5.98 10.22 -39.25 -0.40 -6.38 16 18 C 0.07 1.27 5.47 37.16 0.20 1.47 16 19 C -0.11 -2.29 5.53 -26.73 -0.15 -2.43 16 20 C 0.02 0.61 4.97 -27.89 -0.14 0.48 16 21 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 22 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 25 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 28 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.40 6.43 -51.93 -0.33 0.07 16 31 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.12 0.88 7.67 -52.49 -0.40 0.48 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.38 6.93 -51.93 -0.36 0.02 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.70 7.80 -51.93 -0.40 0.29 16 39 H 0.09 0.96 7.60 -51.93 -0.39 0.56 16 40 H 0.11 0.97 7.97 -51.93 -0.41 0.56 16 41 H 0.11 0.92 7.57 -51.93 -0.39 0.52 16 42 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 43 H 0.07 1.24 8.13 -51.92 -0.42 0.81 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -31.67 389.96 -10.43 -42.10 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -8.14 Total: -3.07 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -3.20 Total: -20.05 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.74 Total: -26.15 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.68 Total: -15.30 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.67 -10.43 -42.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753558033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.523 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds