Wall clock time and date at job start Tue Mar 31 2020 11:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38142 * 119.89549 * 2 1 4 4 C 1.38207 * 119.93616 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.93561 * 0.02562 * 4 3 2 6 6 C 1.38448 * 120.21227 * 0.02562 * 5 4 3 7 7 C 1.38264 * 119.85368 * 359.97438 * 6 5 4 8 8 C 1.51369 * 109.75120 * 179.97438 * 7 6 5 9 9 H 1.09000 * 110.30238 * 101.74001 * 8 7 6 10 10 C 1.53001 * 110.38354 * 223.84445 * 8 7 6 11 11 C 1.54347 * 105.17258 * 342.80949 * 8 7 6 12 12 C 1.51373 * 130.39584 * 179.97438 * 6 5 4 13 13 H 1.09006 * 110.38584 * 78.26014 * 12 6 5 14 14 C 1.52998 * 110.30359 * 316.15165 * 12 6 5 15 15 C 1.50696 * 109.47297 * 186.26814 * 14 12 6 16 16 O 1.20822 * 120.00189 * 355.50962 * 15 14 12 17 17 O 1.34236 * 120.00118 * 175.50524 * 15 14 12 18 18 C 1.45202 * 116.99832 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.46784 * 180.02562 * 18 17 15 20 20 C 1.52996 * 109.46985 * 179.97438 * 19 18 17 21 21 C 1.50705 * 109.47163 * 180.02562 * 20 19 18 22 22 H 1.07999 * 119.99876 * 359.97438 * 21 20 19 23 23 C 1.37873 * 119.99824 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00175 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99807 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47395 * 270.00211 * 25 23 21 27 27 H 1.48500 * 109.47118 * 30.00427 * 25 23 21 28 28 H 1.48502 * 109.46951 * 150.00237 * 25 23 21 29 29 H 1.08996 * 109.47574 * 262.17044 * 1 2 3 30 30 H 1.09007 * 109.46880 * 22.17232 * 1 2 3 31 31 H 1.09003 * 109.47052 * 142.16315 * 1 2 3 32 32 H 1.08002 * 120.02890 * 359.95370 * 3 2 1 33 33 H 1.08001 * 120.03368 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.89309 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.46985 * 152.01928 * 10 8 7 36 36 H 1.09007 * 109.47099 * 272.02071 * 10 8 7 37 37 H 1.08996 * 109.47370 * 32.01733 * 10 8 7 38 38 H 1.09002 * 110.82125 * 268.12921 * 11 8 7 39 39 H 1.09004 * 110.81660 * 144.58141 * 11 8 7 40 40 H 1.09000 * 109.47165 * 66.26735 * 14 12 6 41 41 H 1.09004 * 109.46970 * 306.27050 * 14 12 6 42 42 H 1.08994 * 109.47027 * 60.00185 * 18 17 15 43 43 H 1.08997 * 109.46724 * 300.00139 * 18 17 15 44 44 H 1.09001 * 109.46971 * 59.99617 * 19 18 17 45 45 H 1.09005 * 109.47234 * 299.99738 * 19 18 17 46 46 H 1.09001 * 109.47441 * 60.00074 * 20 19 18 47 47 H 1.09005 * 109.47059 * 300.00015 * 20 19 18 48 48 H 0.96994 * 120.00435 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.1976 0.0000 4 6 3.5776 1.1986 0.0005 5 6 4.2679 0.0019 0.0005 6 6 3.5796 -1.1994 -0.0005 7 6 2.1969 -1.2004 -0.0011 8 6 1.6865 -2.6254 -0.0029 9 1 1.3627 -2.9124 0.9976 10 6 0.5333 -2.7771 -0.9970 11 6 2.8901 -3.4852 -0.4436 12 6 4.0921 -2.6237 -0.0013 13 1 4.4160 -2.9112 0.9991 14 6 5.2460 -2.7721 -0.9950 15 6 5.6396 -4.2234 -1.0946 16 8 5.1132 -5.0426 -0.3794 17 8 6.5751 -4.6060 -1.9780 18 6 6.9038 -6.0197 -2.0193 19 6 7.9816 -6.2619 -3.0778 20 6 8.3283 -7.7515 -3.1210 21 6 9.3904 -7.9900 -4.1632 22 1 9.7789 -7.1621 -4.7377 23 6 9.8661 -9.2652 -4.3833 24 7 9.3927 -10.2735 -3.6842 25 14 11.1821 -9.5610 -5.6757 26 1 10.5372 -9.8435 -6.9833 27 1 12.0377 -8.3533 -5.7963 28 1 12.0175 -10.7215 -5.2749 29 1 -0.3634 -0.1400 1.0180 30 1 -0.3633 0.9517 -0.3879 31 1 -0.3633 -0.8116 -0.6304 32 1 1.6543 2.1322 -0.0008 33 1 4.1175 2.1340 0.0010 34 1 5.3479 0.0035 0.0005 35 1 0.5017 -3.8034 -1.3628 36 1 -0.4077 -2.5390 -0.5010 37 1 0.6844 -2.0971 -1.8352 38 1 2.8907 -3.6258 -1.5245 39 1 2.8906 -4.4449 0.0731 40 1 6.0990 -2.1871 -0.6513 41 1 4.9303 -2.4132 -1.9746 42 1 6.0115 -6.5929 -2.2709 43 1 7.2752 -6.3350 -1.0443 44 1 8.8737 -5.6887 -2.8258 45 1 7.6105 -5.9465 -4.0531 46 1 7.4363 -8.3251 -3.3728 47 1 8.6995 -8.0665 -2.1457 48 1 8.7091 -10.1201 -3.0134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753558034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:24 Heat of formation + Delta-G solvation = -99.527119 kcal Electronic energy + Delta-G solvation = -25513.469463 eV Core-core repulsion = 21917.659835 eV Total energy + Delta-G solvation = -3595.809629 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.08361 -40.06600 -37.03277 -36.12034 -34.33777 -34.28536 -31.88048 -31.39783 -29.93729 -28.21299 -27.19807 -26.31994 -24.23469 -23.02941 -22.30999 -21.15743 -20.69003 -20.61276 -19.61589 -17.62362 -16.94931 -16.62173 -16.40971 -16.03692 -15.70174 -15.19686 -14.83604 -14.68191 -14.02853 -13.81701 -13.75028 -13.62505 -13.46896 -13.12473 -12.88921 -12.65847 -12.56272 -12.37048 -12.28902 -12.11095 -11.96400 -11.62364 -11.58956 -11.18306 -11.13124 -10.94200 -10.87746 -10.83286 -10.68468 -10.45700 -10.33211 -10.14174 -9.87327 -9.85044 -8.85509 -8.79584 -8.61399 -8.35551 -6.39294 -4.09084 1.07465 1.09755 2.30835 2.83833 3.42909 3.44520 3.46613 3.62472 4.08708 4.18578 4.50733 4.52599 4.59990 4.61713 4.73268 4.81828 4.91183 4.98503 5.00854 5.10605 5.19422 5.23664 5.29995 5.34138 5.37575 5.37799 5.45199 5.48262 5.52473 5.55529 5.64909 5.68688 5.75644 5.84317 5.89482 5.91696 6.03694 6.07974 6.22988 6.28423 6.39512 6.40425 6.42949 6.72493 6.74126 6.85123 7.31512 7.43018 7.89326 8.16068 8.43024 8.84610 9.63273 11.01452 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.029047 B = 0.001985 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.731587 B =14099.806786 C =14588.944299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.122 4.122 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.087 4.087 7 C -0.086 4.086 8 C -0.055 4.055 9 H 0.085 0.915 10 C -0.147 4.147 11 C -0.108 4.108 12 C -0.036 4.036 13 H 0.096 0.904 14 C -0.107 4.107 15 C 0.457 3.543 16 O -0.510 6.510 17 O -0.359 6.359 18 C 0.068 3.932 19 C -0.102 4.102 20 C 0.011 3.989 21 C -0.602 4.602 22 H 0.051 0.949 23 C 0.014 3.986 24 N -0.912 5.912 25 Si 1.073 2.927 26 H -0.287 1.287 27 H -0.288 1.288 28 H -0.284 1.284 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.010 0.990 47 H 0.010 0.990 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.138 24.093 8.942 31.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.135 4.135 5 C -0.129 4.129 6 C -0.087 4.087 7 C -0.086 4.086 8 C -0.073 4.073 9 H 0.103 0.897 10 C -0.204 4.204 11 C -0.145 4.145 12 C -0.054 4.054 13 H 0.114 0.886 14 C -0.145 4.145 15 C 0.300 3.700 16 O -0.398 6.398 17 O -0.276 6.276 18 C -0.005 4.005 19 C -0.140 4.140 20 C -0.026 4.026 21 C -0.640 4.640 22 H 0.070 0.930 23 C -0.190 4.190 24 N -0.548 5.548 25 Si 0.902 3.098 26 H -0.214 1.214 27 H -0.214 1.214 28 H -0.210 1.210 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.028 0.972 47 H 0.029 0.971 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.344 22.628 8.429 29.730 hybrid contribution -0.845 1.225 0.830 1.704 sum -18.189 23.852 9.259 31.393 Atomic orbital electron populations 1.21065 0.91523 1.03189 1.02597 1.19417 0.95900 0.91792 1.00095 1.20947 0.94305 0.97118 1.01662 1.21010 0.94254 0.97705 1.00572 1.20637 0.99865 0.91223 1.01140 1.20453 0.94196 0.94117 0.99947 1.20416 0.93823 0.94329 1.00030 1.20712 0.95984 0.90529 1.00065 0.89663 1.21955 0.97402 1.02139 0.98935 1.22543 0.91682 0.98599 1.01693 1.20510 0.94451 0.90891 0.99577 0.88645 1.21441 1.00007 0.90408 1.02624 1.23574 0.76929 0.92051 0.77446 1.90639 1.52399 1.54686 1.42118 1.86505 1.53762 1.31167 1.56117 1.23465 0.99620 0.76006 1.01383 1.21614 0.95627 1.00484 0.96287 1.19183 0.96797 0.89260 0.97410 1.22017 1.23680 0.96146 1.22206 0.93030 1.25900 1.00425 0.92377 1.00296 1.70754 1.28228 1.33170 1.22674 0.83480 0.75555 0.75598 0.75212 1.21400 1.21424 1.20952 0.91385 0.91915 0.90245 0.86079 0.85907 0.86145 0.92020 0.92177 0.92245 0.91025 0.89122 0.87627 0.87669 0.91617 0.91629 0.91993 0.91992 0.97159 0.97149 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 9.68 36.01 0.35 -0.47 16 2 C -0.07 -0.62 5.86 -104.58 -0.61 -1.23 16 3 C -0.12 -0.98 9.66 -39.63 -0.38 -1.36 16 4 C -0.12 -0.93 10.05 -39.63 -0.40 -1.33 16 5 C -0.11 -0.96 9.78 -39.54 -0.39 -1.35 16 6 C -0.09 -0.84 5.60 -104.20 -0.58 -1.42 16 7 C -0.09 -0.81 5.39 -104.20 -0.56 -1.37 16 8 C -0.05 -0.48 3.34 -90.74 -0.30 -0.78 16 9 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 10 C -0.15 -1.10 7.75 37.16 0.29 -0.81 16 11 C -0.11 -1.10 4.68 -25.31 -0.12 -1.22 16 12 C -0.04 -0.36 2.60 -90.73 -0.24 -0.60 16 13 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.11 -1.10 5.12 -27.89 -0.14 -1.24 16 15 C 0.46 6.60 7.63 36.00 0.27 6.87 16 16 O -0.51 -8.45 14.15 -18.75 -0.27 -8.71 16 17 O -0.36 -5.95 10.22 -39.27 -0.40 -6.35 16 18 C 0.07 1.26 5.47 37.16 0.20 1.46 16 19 C -0.10 -2.16 5.53 -26.73 -0.15 -2.31 16 20 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 21 C -0.60 -17.30 9.11 -34.44 -0.31 -17.61 16 22 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 23 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 24 N -0.91 -28.16 13.65 55.43 0.76 -27.41 16 25 Si 1.07 25.43 29.90 -169.99 -5.08 20.34 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.33 8.02 -51.92 -0.42 -0.08 16 31 H 0.08 0.48 4.42 -51.93 -0.23 0.25 16 32 H 0.12 0.73 8.05 -52.49 -0.42 0.30 16 33 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.06 0.46 7.96 -51.93 -0.41 0.05 16 36 H 0.06 0.37 6.75 -51.93 -0.35 0.02 16 37 H 0.06 0.46 7.58 -51.93 -0.39 0.07 16 38 H 0.07 0.76 7.69 -51.93 -0.40 0.36 16 39 H 0.09 1.03 7.30 -51.93 -0.38 0.65 16 40 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 43 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 47 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 48 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -32.37 384.37 -10.47 -42.85 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.98 Total: -2.21 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -3.29 Total: -24.31 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: 0.76 Total: -27.41 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.67 Total: -15.06 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.37 -10.47 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753558034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.679 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds