Wall clock time and date at job start Tue Mar 31 2020 11:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38147 * 119.89628 * 2 1 4 4 C 1.38212 * 119.94125 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.92998 * 359.97438 * 4 3 2 6 6 C 1.38449 * 120.21607 * 0.02562 * 5 4 3 7 7 C 1.38263 * 119.85469 * 0.02562 * 6 5 4 8 8 C 1.51365 * 109.75521 * 179.97438 * 7 6 5 9 9 H 1.09001 * 110.30234 * 101.73245 * 8 7 6 10 10 C 1.52994 * 110.30515 * 223.88706 * 8 7 6 11 11 C 1.54353 * 105.17122 * 342.81284 * 8 7 6 12 12 C 1.51370 * 130.39497 * 179.97438 * 6 5 4 13 13 H 1.09000 * 110.38410 * 316.19435 * 12 6 5 14 14 C 1.53001 * 110.30598 * 78.30663 * 12 6 5 15 15 C 1.50701 * 109.46669 * 290.75066 * 14 12 6 16 16 O 1.20820 * 120.00420 * 359.97438 * 15 14 12 17 17 O 1.34227 * 119.99910 * 180.02562 * 15 14 12 18 18 C 1.45197 * 117.00549 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47330 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.46940 * 180.02562 * 19 18 17 21 21 C 1.50698 * 109.47355 * 180.02562 * 20 19 18 22 22 H 1.08005 * 119.99687 * 359.97438 * 21 20 19 23 23 C 1.37876 * 120.00298 * 180.02562 * 21 20 19 24 24 N 1.31509 * 119.99764 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00021 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47282 * 59.99376 * 25 23 21 27 27 H 1.48502 * 109.47301 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47072 * 299.99721 * 25 23 21 29 29 H 1.08994 * 109.47614 * 262.98611 * 1 2 3 30 30 H 1.09007 * 109.47296 * 22.98901 * 1 2 3 31 31 H 1.09009 * 109.47005 * 142.98247 * 1 2 3 32 32 H 1.08002 * 120.03182 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.03578 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.88925 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.47252 * 160.38934 * 10 8 7 36 36 H 1.09004 * 109.46953 * 280.38347 * 10 8 7 37 37 H 1.09001 * 109.47193 * 40.38844 * 10 8 7 38 38 H 1.08998 * 110.81511 * 268.12119 * 11 8 7 39 39 H 1.08992 * 110.81941 * 144.58106 * 11 8 7 40 40 H 1.08994 * 109.47168 * 170.74879 * 14 12 6 41 41 H 1.09000 * 109.46545 * 50.74597 * 14 12 6 42 42 H 1.09005 * 109.46592 * 299.99983 * 18 17 15 43 43 H 1.09002 * 109.47050 * 59.99712 * 18 17 15 44 44 H 1.08997 * 109.47062 * 299.99661 * 19 18 17 45 45 H 1.08997 * 109.47433 * 60.00341 * 19 18 17 46 46 H 1.09008 * 109.47216 * 299.99985 * 20 19 18 47 47 H 1.09002 * 109.47309 * 59.99871 * 20 19 18 48 48 H 0.97010 * 119.99448 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1955 1.1976 0.0000 4 6 3.5776 1.1987 -0.0005 5 6 4.2678 0.0020 -0.0005 6 6 3.5795 -1.1993 -0.0005 7 6 2.1969 -1.2004 -0.0011 8 6 1.6864 -2.6253 -0.0016 9 1 1.3628 -2.9115 0.9992 10 6 0.5342 -2.7762 -0.9968 11 6 2.8902 -3.4855 -0.4415 12 6 4.0922 -2.6235 -0.0010 13 1 4.9143 -2.7308 -0.7087 14 6 4.5462 -3.0249 1.4038 15 6 5.7928 -2.2598 1.7665 16 8 6.2695 -1.4745 0.9818 17 8 6.3742 -2.4515 2.9611 18 6 7.5723 -1.6810 3.2424 19 6 8.0875 -2.0312 4.6399 20 6 9.3496 -1.2188 4.9365 21 6 9.8575 -1.5642 6.3127 22 1 9.3323 -2.2902 6.9156 23 6 10.9919 -0.9526 6.8025 24 7 11.6311 -0.0681 6.0685 25 14 11.6210 -1.3802 8.5086 26 1 11.9397 -2.8293 8.5699 27 1 12.8460 -0.5917 8.7965 28 1 10.5776 -1.0598 9.5155 29 1 -0.3634 -0.1255 1.0199 30 1 -0.3634 0.9461 -0.4014 31 1 -0.3633 -0.8206 -0.6188 32 1 1.6543 2.1323 -0.0004 33 1 4.1174 2.1341 -0.0010 34 1 5.3478 0.0037 -0.0005 35 1 0.4074 -3.8290 -1.2490 36 1 -0.3844 -2.3966 -0.5493 37 1 0.7587 -2.2104 -1.9010 38 1 2.8906 -3.6272 -1.5222 39 1 2.8907 -4.4447 0.0760 40 1 4.7567 -4.0941 1.4260 41 1 3.7574 -2.7949 2.1200 42 1 8.3377 -1.9166 2.5029 43 1 7.3390 -0.6172 3.1976 44 1 7.3219 -1.7953 5.3790 45 1 8.3208 -3.0950 4.6851 46 1 10.1154 -1.4543 4.1973 47 1 9.1160 -0.1551 4.8914 48 1 12.4295 0.3619 6.4130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753558038.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:32 Heat of formation + Delta-G solvation = -91.171770 kcal Electronic energy + Delta-G solvation = -25896.877506 eV Core-core repulsion = 22301.430193 eV Total energy + Delta-G solvation = -3595.447314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04216 -39.86913 -36.83379 -36.25487 -33.99291 -33.97133 -31.82921 -31.32902 -29.74781 -28.15266 -27.27214 -26.57957 -24.15652 -23.19911 -22.10736 -21.20069 -20.62703 -20.28140 -19.37850 -17.43439 -16.74502 -16.59618 -16.24914 -15.85915 -15.45654 -15.22077 -14.72319 -14.47846 -14.43657 -13.98576 -13.67385 -13.50252 -13.25275 -12.83626 -12.77968 -12.54947 -12.37748 -12.20612 -12.06576 -11.93796 -11.87230 -11.80229 -11.67066 -11.20374 -10.95471 -10.86651 -10.82347 -10.67235 -10.62225 -10.54663 -10.34059 -10.20271 -9.70634 -9.48678 -9.17240 -8.63479 -8.58353 -8.38364 -6.03248 -4.06336 1.28747 1.35129 2.39973 2.93556 3.32515 3.36756 3.39429 3.66027 4.18276 4.22494 4.43597 4.51039 4.68795 4.79931 4.83850 4.87281 4.94044 5.10858 5.16432 5.21511 5.27509 5.29997 5.32574 5.35602 5.40180 5.43468 5.59332 5.60685 5.62824 5.64793 5.67377 5.70161 5.83480 5.86583 5.94756 6.02896 6.03788 6.19379 6.47931 6.49114 6.55087 6.59796 6.66686 6.89381 6.98515 7.03836 7.60257 7.71663 7.94823 8.01581 8.36372 8.99660 9.57825 11.08171 Molecular weight = 316.18amu Principal moments of inertia in cm(-1) A = 0.023015 B = 0.002256 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.293534 B =12409.539245 C =12917.903950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.097 4.097 6 C -0.088 4.088 7 C -0.094 4.094 8 C -0.052 4.052 9 H 0.085 0.915 10 C -0.148 4.148 11 C -0.111 4.111 12 C -0.040 4.040 13 H 0.091 0.909 14 C -0.104 4.104 15 C 0.456 3.544 16 O -0.508 6.508 17 O -0.360 6.360 18 C 0.069 3.931 19 C -0.109 4.109 20 C 0.024 3.976 21 C -0.522 4.522 22 H 0.057 0.943 23 C 0.057 3.943 24 N -0.895 5.895 25 Si 0.896 3.104 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.276 1.276 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.141 0.859 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.357 -4.696 -16.156 29.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.080 4.080 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.114 4.114 6 C -0.088 4.088 7 C -0.094 4.094 8 C -0.070 4.070 9 H 0.103 0.897 10 C -0.205 4.205 11 C -0.149 4.149 12 C -0.058 4.058 13 H 0.109 0.891 14 C -0.142 4.142 15 C 0.299 3.701 16 O -0.397 6.397 17 O -0.277 6.277 18 C -0.004 4.004 19 C -0.147 4.147 20 C -0.013 4.013 21 C -0.560 4.560 22 H 0.075 0.925 23 C -0.145 4.145 24 N -0.534 5.534 25 Si 0.723 3.277 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.202 1.202 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.158 0.842 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.023 -4.331 -16.359 29.385 hybrid contribution 0.674 0.183 0.987 1.209 sum -23.349 -4.148 -15.373 28.261 Atomic orbital electron populations 1.21079 0.91773 1.03015 1.02426 1.19325 0.95623 0.91844 1.01206 1.20946 0.94341 0.97036 1.01568 1.21121 0.94165 0.98061 1.00769 1.21188 1.01563 0.90851 0.97839 1.20352 0.93530 0.94366 1.00535 1.20367 0.93956 0.94029 1.01010 1.20650 0.95544 0.90917 0.99935 0.89703 1.21978 0.97780 1.01683 0.99093 1.22466 0.92700 0.97897 1.01792 1.20486 0.98548 0.91355 0.95422 0.89084 1.21412 0.93801 1.01002 0.97984 1.23553 0.85491 0.80997 0.80019 1.90545 1.63782 1.34760 1.50621 1.86494 1.42152 1.63529 1.35491 1.23465 0.82602 0.94670 0.99633 1.21757 0.99840 1.01657 0.91412 1.19044 0.90275 0.94948 0.97003 1.21137 1.10271 1.23927 1.00684 0.92497 1.25031 0.96691 0.95038 0.97723 1.69959 1.18896 1.27351 1.37172 0.86601 0.78196 0.78465 0.84410 1.20175 1.21259 1.20175 0.91546 0.92076 0.90325 0.86292 0.86064 0.84176 0.92293 0.91821 0.92324 0.90291 0.90057 0.87335 0.87847 0.91583 0.91648 0.92226 0.92193 0.96270 0.96277 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.65 36.00 0.35 -0.59 16 2 C -0.08 -0.82 5.86 -104.58 -0.61 -1.43 16 3 C -0.12 -1.30 9.67 -39.62 -0.38 -1.68 16 4 C -0.12 -1.48 10.05 -39.62 -0.40 -1.88 16 5 C -0.10 -1.30 9.06 -39.54 -0.36 -1.65 16 6 C -0.09 -1.05 5.16 -104.21 -0.54 -1.59 16 7 C -0.09 -0.97 5.46 -104.21 -0.57 -1.54 16 8 C -0.05 -0.40 3.34 -90.74 -0.30 -0.70 16 9 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 10 C -0.15 -0.91 7.80 37.15 0.29 -0.62 16 11 C -0.11 -0.79 6.06 -25.32 -0.15 -0.95 16 12 C -0.04 -0.40 2.50 -90.74 -0.23 -0.62 16 13 H 0.09 0.98 7.91 -51.93 -0.41 0.57 16 14 C -0.10 -1.07 5.20 -27.88 -0.15 -1.21 16 15 C 0.46 6.74 7.73 36.01 0.28 7.02 16 16 O -0.51 -8.51 12.16 -18.75 -0.23 -8.74 16 17 O -0.36 -6.05 10.22 -39.25 -0.40 -6.46 16 18 C 0.07 1.30 5.47 37.16 0.20 1.50 16 19 C -0.11 -2.30 5.53 -26.73 -0.15 -2.45 16 20 C 0.02 0.63 4.97 -27.88 -0.14 0.50 16 21 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 22 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 25 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.40 8.03 -51.92 -0.42 -0.02 16 31 H 0.08 0.50 4.34 -51.92 -0.23 0.27 16 32 H 0.12 1.03 8.05 -52.49 -0.42 0.61 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.14 2.10 5.72 -52.49 -0.30 1.80 16 35 H 0.06 0.29 8.07 -51.93 -0.42 -0.12 16 36 H 0.06 0.34 6.07 -51.93 -0.32 0.03 16 37 H 0.06 0.40 7.99 -51.93 -0.41 -0.01 16 38 H 0.08 0.52 7.91 -51.93 -0.41 0.11 16 39 H 0.08 0.44 7.86 -51.93 -0.41 0.03 16 40 H 0.11 0.85 8.09 -51.93 -0.42 0.43 16 41 H 0.10 0.99 8.13 -51.93 -0.42 0.56 16 42 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 43 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -31.90 382.02 -10.35 -42.26 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.93 Total: -1.71 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -3.27 Total: -21.50 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.63 Total: -15.20 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.90 -10.35 -42.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753558038.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.915 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds